HHsearch alignment for GI: 254780238 and conserved domain: TIGR03628

>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.

Probab=100.00  E-value=1.4e-37  Score=250.90  Aligned_cols=104  Identities=44%  Similarity=0.582  Sum_probs=101.4

Q ss_pred             CEEEEEEECCCCEEEEEECCCC-CEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC--------
Q ss_conf             2189999179877999970899-8899740444355775433520378999999999998698199999977--------
Q gi|254780238|r   18 SGRAHVVSTFNNTRITITDPHG-NTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSG--------   88 (129)
Q Consensus        18 ~GiihI~~t~NNTiitlTd~~G-n~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG--------   88 (129)
T Consensus         2 ~Gi~hI~atfNNTiitvTD~~G~~~~~~ssgg~~~~~~~~K~Tp~AAq~aae~~a~~~~~~Gi~~v~V~ikG~G~n~~~~   81 (114)
T TIGR03628         2 WGIAHIYSSFNNTIITITDITGAETIARSSGGMVVKADRDESSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKS   81 (114)
T ss_pred             CEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCC
T ss_conf             47999991689859999859999799996687465188877888999999999999999869849999999478787778


Q ss_pred             CCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCC
Q ss_conf             998678887787636936999996388988886
Q gi|254780238|r   89 LGAGRDSALRALRAIGFTIVSICDVTMIAHNGC  121 (129)
Q Consensus        89 ~G~GR~~~ik~l~~~glkI~~I~D~T~ip~nGc  121 (129)
T Consensus        82 pGpGresAiral~~~Gl~I~~I~DvTPiPHNGt  114 (114)
T TIGR03628        82 PGPGAQAAIRALARAGLRIGRIEDVTPIPHDGT  114 (114)
T ss_pred             CCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCC
T ss_conf             986289999999868979999898799998988