HHsearch alignment of GI: 254780238 and MMDB domain: 2j01_S_
>2j01_S (S:) 50S ribosomal protein L18; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus}
Probab=96.40 E-value=0.0014 Score=42.34 Aligned_cols=87 Identities=17% Similarity=0.164 Sum_probs=65.0
Q ss_pred CCEEEEEEECCCCEEEEEECCCC-CEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCC-CH-
Q ss_conf 52189999179877999970899-8899740444355775433520378999999999998698199999977998-67-
Q gi|254780238|r 17 VSGRAHVVSTFNNTRITITDPHG-NTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGA-GR- 93 (129)
Q Consensus 17 ~~GiihI~~t~NNTiitlTd~~G-n~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~-GR- 93 (129)
....+.|+.|..++.+.+.|..+ .+++.+|+=...+++. ...||+.+++.+++.+++.|+..+..-..|+=+ ||
T Consensus 22 ~~~RL~V~~Snk~i~aqvid~~~~~~lasasT~e~~~~~~---n~~Aa~~vG~~la~r~~~~gi~~v~fDrg~~~y~grv 98 (112)
T 2j01_S 22 GRLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLKGN---KTEVARQVGRALAEKALALGIKQVAFDRGPYKYHGRV 98 (112)
T ss_dssp SSCEEECCBCSSCBCEEEEETTTTEEEEEECSTTTCCCSC---HHHHHHHHHHHHHHHHHHTSCCCCBCCCSTTCSSSSC
T ss_pred CCCEEEEEEECCEEEEEEEECCCCCEEEEECCCCCCCCCC---CHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHH
T ss_conf 9866999970781799999879883899861333222465---1999999999999999986998899808997212099
Q ss_pred HHHHHHHHHCCCE
Q ss_conf 8887787636936
Q gi|254780238|r 94 DSALRALRAIGFT 106 (129)
Q Consensus 94 ~~~ik~l~~~glk 106 (129)
.++..++...||+
T Consensus 99 ~a~~~~~r~~Gl~ 111 (112)
T 2j01_S 99 KALAEGAREGGLE 111 (112)
T ss_dssp CCCSSCTTCC---
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999984888