HHsearch alignment of GI: 254780238 and MMDB domain: 3i1m_K_

>3i1m_K (K:) 30S ribosomal protein S11; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_K* 3e1a_C 3e1c_C 1vs5_K 3i1o_K 3i1q_K 3i1s_K 3i1z_K 3i21_K 2qal_K* 1p6g_K 1p87_K 2aw7_K 2avy_K 2i2u_K 2i2p_K* 2qan_K* 2qb9_K* 2qbb_K* 2qbd_K ...
Probab=100.00  E-value=0  Score=310.92  Aligned_cols=129  Identities=52%  Similarity=0.897  Sum_probs=128.0

Q ss_pred             CCCCCCCCCCCEEEECCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf             98876443343001225218999917987799997089988997404443557754335203789999999999986981
Q gi|254780238|r    1 MPKSPSRIRNRERKNIVSGRAHVVSTFNNTRITITDPHGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMS   80 (129)
Q Consensus         1 m~~~~~~~~~k~~~~i~~GiihI~~t~NNTiitlTd~~Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~   80 (129)
                      |+++..+++++++++++.|++||++|+|||||||||++|++++|+|+|++||||++|+|+|||+++++.++++++++||+
T Consensus         1 ma~~~~~~~~~~~~~~~~giihI~~s~NNT~vt~Td~~g~~~~~~S~G~~GfK~~rk~t~~Aa~~~a~~~~~~~~~~Gi~   80 (129)
T 3i1m_K            1 MAKAPIRARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIK   80 (129)
T ss_dssp             ------------CCCCSEEEEEEEECSSCEEEEEEETTCCCCEEEETGGGSCCGGGTTSHHHHHHHHHHHHTTTGGGCCC
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCE
T ss_conf             98887555454243156618999923787899998699998889843443226754443679999999999999982982


Q ss_pred             EEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             9999997799867888778763693699999638898888688886789
Q gi|254780238|r   81 SLEVKVSGLGAGRDSALRALRAIGFTIVSICDVTMIAHNGCRPRKRRRI  129 (129)
Q Consensus        81 ~v~v~ikG~G~GR~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K~RRi  129 (129)
                      .|+|+++|+|+||+++|++|..+||+|.+|.|+||+|||||||||+|||
T Consensus        81 ~v~v~~kG~G~gr~~ai~~l~~~glkI~~I~D~T~iphnGcRp~K~RRv  129 (129)
T 3i1m_K           81 NLEVMVKGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV  129 (129)
T ss_dssp             EEEEEEESSSTTSSHHHHHHHTTTCCCCEEEBCCCCCSSCSCCCCCCCC
T ss_pred             EEEEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf             9999997977861777546524898898989899999999897989899