HHsearch results for GI: 254780238 and protein with PDBid: 2zkq_k
>2zkq_k 40S ribosomal protein S14E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_K*
Probab=100.00 E-value=6.7e-44 Score=288.18 Aligned_cols=116 Identities=32% Similarity=0.490 Sum_probs=109.9
Q ss_pred EEECCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC---
Q ss_conf 01225218999917987799997089988997404443557754-33520378999999999998698199999977---
Q gi|254780238|r 13 RKNIVSGRAHVVSTFNNTRITITDPHGNTIAWSSPKVVGFSGSR-KNSPFAAQVATDDCSAKAQNHGMSSLEVKVSG--- 88 (129)
Q Consensus 13 ~~~i~~GiihI~~t~NNTiitlTd~~Gn~i~~~S~G~~gfkg~k-k~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG--- 88 (129)
+..+..||+||++|||||||||||++||+++|+|+|.+||++.+ ++||||||++++.+++++.++||+.++|+++|
T Consensus 23 ~~~~~~GivhI~as~NNTiitlTD~~Gn~~~~~SsG~~gfk~~~rk~t~~AA~~aa~~~~~k~~~~Gik~v~v~vrG~g~ 102 (151)
T 2zkq_k 23 EGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGG 102 (151)
T ss_dssp CCCCSBCCEEEEECSSCEEEEEECTTCCEEEEEESTTSSCCTTTTTTSHHHHHHHHHHHHHHTTTTCCCBCCEEEESSCC
T ss_pred CCCEEEEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEEEECCC
T ss_conf 58617899999905788499997499999999854400145465567326999999999999998496399999984057
Q ss_pred -----CCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf -----9986788877876369369999963889888868888678
Q gi|254780238|r 89 -----LGAGRDSALRALRAIGFTIVSICDVTMIAHNGCRPRKRRR 128 (129)
Q Consensus 89 -----~G~GR~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K~RR 128 (129)
||+||+++||+|+..||+|++|+|+||+|||||||||+||
T Consensus 103 ~~~kgpGpGr~~air~l~~~glkI~~I~D~TpiphNGcRpkK~RR 147 (151)
T 2zkq_k 103 NRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRR 147 (151)
T ss_dssp BTTBCCCTTHHHHHHHHHHHTCCCSCEECCCCCCCSCSCCSCTTC
T ss_pred CCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 755789875788998897689389999981989989989899888