HHSEARCH alignment of GI: 254780238 and SCOP domain: d2gycm1

Alignment

Probab=96.50  E-value=0.0033  Score=37.70  Aligned_cols=86  Identities=17%  Similarity=0.162  Sum_probs=61.8

Q ss_pred             EEEEEEECCCCEEEEEECCC-CCEEEEECCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC-CCC-CH
Q ss_conf             18999917987799997089-9889974044435577543--3520378999999999998698199999977-998-67
Q gi|254780238|r   19 GRAHVVSTFNNTRITITDPH-GNTIAWSSPKVVGFSGSRK--NSPFAAQVATDDCSAKAQNHGMSSLEVKVSG-LGA-GR   93 (129)
Q Consensus        19 GiihI~~t~NNTiitlTd~~-Gn~i~~~S~G~~gfkg~kk--~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG-~G~-GR   93 (129)
                      .-+.|+-|.+|...++.|.. +.++..+|+=...+++..+  +.-.||..+++.+++++++.||..| ++=+| +=. ||
T Consensus        22 pRL~V~rSnkhiyaQiIdd~~~~tl~saST~~k~~~~~~~~~~n~~aA~~vG~~la~ra~~~gI~~v-vfDR~g~~YhGr  100 (113)
T d2gycm1          22 TRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDV-SFDRSGFQYHGR  100 (113)
T ss_dssp             CCCBEEECSSCEEEEEEETTTTEEEEEEETTGGGGTSCCSCSSSHHHHHHHHHHHHHHHHHHTCCCC-CCBCCSCCSSSH
T ss_pred             CEEEEEEECCCEEEEEEECCCCCEEEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-EECCCCCCCCHH
T ss_conf             7599998178179999984699178874103566654327775328999999999999998799999-987999864149


Q ss_pred             H-HHHHHHHHCCC
Q ss_conf             8-88778763693
Q gi|254780238|r   94 D-SALRALRAIGF  105 (129)
Q Consensus        94 ~-~~ik~l~~~gl  105 (129)
                      - ++.-++...||
T Consensus       101 Vka~ad~aRe~Gl  113 (113)
T d2gycm1         101 VQALADAAREAGL  113 (113)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHCCC
T ss_conf             9999999997489

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Escherichia coli [TaxId: 562]