HHSEARCH alignment of GI: 254780238 and SCOP domain: d2j01s1

Alignment

Probab=95.35  E-value=0.011  Score=34.63  Aligned_cols=60  Identities=22%  Similarity=0.269  Sum_probs=48.9

Q ss_pred             EEEEEECCCCEEEEEECC-CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             899991798779999708-998899740444355775433520378999999999998698199
Q gi|254780238|r   20 RAHVVSTFNNTRITITDP-HGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSL   82 (129)
Q Consensus        20 iihI~~t~NNTiitlTd~-~Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v   82 (129)
                      .+.|+-|.+|..+.+.|. +|.+|..+|+-...+++   ....+|..+++.+++++++.||..|
T Consensus         3 RL~V~rSnk~iyaQiIDd~~~~tl~s~St~~k~~k~---~~~~~A~~vG~~la~~ak~~gI~~v   63 (86)
T d2j01s1           3 RLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLKG---NKTEVARQVGRALAEKALALGIKQV   63 (86)
T ss_dssp             EEECCBCSSCBCEEEEETTTTEEEEEECSTTTCCCS---CHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred             EEEEEECCCEEEEEEEECCCCEEEEEEECCCHHHCC---CCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             799998178389999976798699998213111048---7789999999999999998799889

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Thermus thermophilus [TaxId: 274]