Query gi|254780238|ref|YP_003064651.1| 30S ribosomal protein S11 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 129
No_of_seqs 107 out of 1080
Neff 5.7
Searched_HMMs 13730
Date Tue May 24 01:16:01 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780238.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qalk1 c.55.4.1 (K:12-128) Ri 100.0 0 0 305.2 13.4 117 13-129 1-117 (117)
2 d2uubk1 c.55.4.1 (K:11-129) Ri 100.0 0 0 302.0 15.0 116 13-128 1-116 (119)
3 d1vqon1 c.55.4.1 (N:1-186) Rib 97.3 0.0011 7.7E-08 40.8 8.9 100 17-125 30-138 (186)
4 d1ovya_ c.55.4.1 (A:) Ribosoma 97.0 0.00045 3.3E-08 43.0 4.9 86 20-106 7-96 (97)
5 d2gycm1 c.55.4.1 (M:3-115) Rib 96.5 0.0033 2.4E-07 37.7 6.3 86 19-105 22-113 (113)
6 d2j01s1 c.55.4.1 (S:23-108) Ri 95.4 0.011 7.7E-07 34.6 4.6 60 20-82 3-63 (86)
7 d2zjrl1 c.55.4.1 (L:8-111) Rib 89.6 0.075 5.4E-06 29.4 2.0 73 19-96 20-95 (104)
8 d1gtma1 c.2.1.7 (A:181-419) Gl 82.8 0.75 5.5E-05 23.3 4.2 63 53-115 4-67 (239)
9 d1bgva1 c.2.1.7 (A:195-449) Gl 81.9 0.87 6.3E-05 22.9 4.2 63 53-116 9-71 (255)
10 d1v9la1 c.2.1.7 (A:180-421) Gl 81.1 0.98 7.2E-05 22.6 4.3 63 52-115 3-65 (242)
11 d1b26a1 c.2.1.7 (A:179-412) Gl 77.8 0.74 5.4E-05 23.3 2.8 65 53-118 4-69 (234)
12 d1hwxa1 c.2.1.7 (A:209-501) Gl 61.1 2.4 0.00017 20.2 2.4 66 54-119 2-74 (293)
13 d1gado1 c.2.1.3 (O:0-148,O:313 57.5 5.1 0.00037 18.2 3.6 30 83-112 3-33 (166)
14 d1u8fo1 c.2.1.3 (O:3-151,O:316 56.9 5 0.00036 18.3 3.4 30 83-112 3-33 (169)
15 d2czca2 c.2.1.3 (A:1-139,A:302 47.6 8.5 0.00062 16.8 4.2 31 83-114 4-36 (172)
16 d1cf2o1 c.2.1.3 (O:1-138,O:304 43.2 10 0.00073 16.4 4.2 26 82-108 79-106 (171)
17 d2i3oa1 d.153.1.6 (A:1-516) Hy 28.7 17 0.0012 15.0 3.1 21 28-48 330-350 (516)
18 d2c4ka2 c.61.1.2 (A:167-350) P 26.1 19 0.0014 14.7 3.9 60 64-125 96-156 (184)
19 g2dg5.1 d.153.1.6 (A:37-387,B: 21.6 23 0.0017 14.2 3.3 22 26-47 349-370 (541)
20 d2g82a1 c.2.1.3 (A:1-148,A:311 20.9 24 0.0018 14.1 2.8 16 75-92 107-122 (168)
21 d2nlza1 d.153.1.6 (A:3-539) Ce 20.1 25 0.0018 14.0 3.3 22 27-48 354-375 (537)
No 1
>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=305.18 Aligned_cols=117 Identities=52% Similarity=0.912 Sum_probs=115.1
Q ss_pred EEECCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf 01225218999917987799997089988997404443557754335203789999999999986981999999779986
Q gi|254780238|r 13 RKNIVSGRAHVVSTFNNTRITITDPHGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAG 92 (129)
Q Consensus 13 ~~~i~~GiihI~~t~NNTiitlTd~~Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~G 92 (129)
+++++.|++||++|+|||||||||++||++.|+|+|++||||++|+||||||++++.++++++++||+.|+|+++|+|+|
T Consensus 1 k~~~~~Gi~hI~~t~NNTiitlTD~~G~~~~~~S~G~~gfkg~~K~t~~Aa~~~a~~~~~~~~~~gi~~v~V~~kG~G~G 80 (117)
T d2qalk1 1 RKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPG 80 (117)
T ss_dssp CCCCCEEEEEEECCSSCCEEEEEETTSCEEEEEETTTSSCCHHHHTSHHHHHHHHHHHHHHHGGGTCCEEEEEEECCSTT
T ss_pred CCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 95144259999925798999998799999999863235546643333479999999999999983996899999679996
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 7888778763693699999638898888688886789
Q gi|254780238|r 93 RDSALRALRAIGFTIVSICDVTMIAHNGCRPRKRRRI 129 (129)
Q Consensus 93 R~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K~RRi 129 (129)
|++++++|+..||+|.+|+|+||+|||||||||+|||
T Consensus 81 R~~air~l~~~gl~I~~I~D~TpiphnGcRp~K~RRv 117 (117)
T d2qalk1 81 RESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV 117 (117)
T ss_dssp TTHHHHHHHHTTCEEEEEEECCCCCSSCSCCCCCCCC
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 4999999975898899989899999899898999899
No 2
>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=0 Score=302.01 Aligned_cols=116 Identities=52% Similarity=0.868 Sum_probs=114.0
Q ss_pred EEECCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf 01225218999917987799997089988997404443557754335203789999999999986981999999779986
Q gi|254780238|r 13 RKNIVSGRAHVVSTFNNTRITITDPHGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAG 92 (129)
Q Consensus 13 ~~~i~~GiihI~~t~NNTiitlTd~~Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~G 92 (129)
+++++.|++||++|+|||||||||++||+++|+|+|++||||++|+||||||++++.++++++++||+.|+|+++|+|+|
T Consensus 1 k~~~~~GivhI~~t~NNT~itlTD~~Gn~i~~~S~G~~gfkg~rk~t~~Aa~~~a~~~~~k~~~~g~~~v~v~~kG~G~g 80 (119)
T d2uubk1 1 KRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAG 80 (119)
T ss_dssp CCCCSEEEEEEEECSSCEEEEEECTTSCEEEEEETTTSSCCSGGGGSHHHHHHHHHHHHHHHHTTTCCEEEEEEECCCTT
T ss_pred CCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 96042538999923688999998799999999844620006643345257899999999999984981999999868999
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 788877876369369999963889888868888678
Q gi|254780238|r 93 RDSALRALRAIGFTIVSICDVTMIAHNGCRPRKRRR 128 (129)
Q Consensus 93 R~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K~RR 128 (129)
|++++++|+..|++|++|+|+||+|||||||||+||
T Consensus 81 R~~~ik~l~~~g~kI~~I~D~T~iphnGcRp~K~RR 116 (119)
T d2uubk1 81 REQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFR 116 (119)
T ss_dssp HHHHHHHHHTSSSEEEECEECCCCCSSCSCCCGGGC
T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 399999998789889999989999989989898887
No 3
>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=97.26 E-value=0.0011 Score=40.75 Aligned_cols=100 Identities=15% Similarity=0.124 Sum_probs=74.8
Q ss_pred CCEEEEEEECCCCEEEEEE--CCCC-CEEEEECCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHCCCCEEEEE--EECC
Q ss_conf 5218999917987799997--0899-889974044435577543--3520378999999999998698199999--9779
Q gi|254780238|r 17 VSGRAHVVSTFNNTRITIT--DPHG-NTIAWSSPKVVGFSGSRK--NSPFAAQVATDDCSAKAQNHGMSSLEVK--VSGL 89 (129)
Q Consensus 17 ~~GiihI~~t~NNTiitlT--d~~G-n~i~~~S~G~~gfkg~kk--~t~~Aa~~~a~~~~~~~~~~gi~~v~v~--ikG~ 89 (129)
....+.|+.|.+|+++.+. |..| .+++.+|+-.+..++.+. ....||+.++..+++++++.|+..+.+- ..|+
T Consensus 30 ~kpRLvVrrSNk~IyaQII~~d~~gd~vlaSAsS~el~k~g~k~~~~N~~AAy~~G~liA~ra~~~gi~~vvfD~G~~~~ 109 (186)
T d1vqon1 30 GKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLDIGLNSP 109 (186)
T ss_dssp CSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGSCCSCSSSHHHHHHHHHHHHHHHHHTTCCBCEEECTTSCC
T ss_pred CCCEEEEEEECCCEEEEEEEECCCCCEEEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99769999958915999988448999799997043255420004763777998867999999986255613885077778
Q ss_pred CC-CH-HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 98-67-88877876369369999963889888868888
Q gi|254780238|r 90 GA-GR-DSALRALRAIGFTIVSICDVTMIAHNGCRPRK 125 (129)
Q Consensus 90 G~-GR-~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K 125 (129)
-. || .+++++....||+ |||+-.+-|-
T Consensus 110 ~yhgRV~A~akgard~GL~---------Iph~~~~~p~ 138 (186)
T d1vqon1 110 TPGSKVFAIQEGAIDAGLD---------IPHNDDVLAD 138 (186)
T ss_dssp CTTCHHHHHHHHHHHTTCB---------CCCCGGGSCC
T ss_pred CCCCHHHHHHHHHHHCCCC---------CCCCCCCCCC
T ss_conf 7652299999999966916---------7888765888
No 4
>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=97.00 E-value=0.00045 Score=43.01 Aligned_cols=86 Identities=22% Similarity=0.212 Sum_probs=64.6
Q ss_pred EEEEEECCCCEEEEEECC-CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC-CCC-CH-HH
Q ss_conf 899991798779999708-998899740444355775433520378999999999998698199999977-998-67-88
Q gi|254780238|r 20 RAHVVSTFNNTRITITDP-HGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSG-LGA-GR-DS 95 (129)
Q Consensus 20 iihI~~t~NNTiitlTd~-~Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG-~G~-GR-~~ 95 (129)
.+.|+.|.+|+.+++.|. .|.++..+|+=...++....+.-.||..+++.+++++++.|+..+..- +| +-+ || .+
T Consensus 7 RL~V~kSnkhiyaQlIdd~~~~tl~s~St~~k~~~~~~~~n~~aA~~vG~~~a~kak~~gi~~vvfD-r~g~~yhGrvka 85 (97)
T d1ovya_ 7 RLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFGLDSTNNIEAAKKVGELVAKRALEKGIKQVVFD-RGGYLYHGRVKA 85 (97)
T ss_dssp SEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTCSSCTTSHHHHHHHHHHHHHHHHHHSSSCCCCC-STTCSSCSSTHH
T ss_pred EEEEEEECCEEEEEEEECCCCEEEEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCCCCHHHHHH
T ss_conf 8999983783899999757980899731133443123457399999999999999998699789973-799714189999
Q ss_pred HHHHHHHCCCE
Q ss_conf 87787636936
Q gi|254780238|r 96 ALRALRAIGFT 106 (129)
Q Consensus 96 ~ik~l~~~glk 106 (129)
+..++...||+
T Consensus 86 ~a~~~R~~Gl~ 96 (97)
T d1ovya_ 86 LADAAREAGLE 96 (97)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHCCC
T ss_conf 99999982888
No 5
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]}
Probab=96.50 E-value=0.0033 Score=37.70 Aligned_cols=86 Identities=17% Similarity=0.162 Sum_probs=61.8
Q ss_pred EEEEEEECCCCEEEEEECCC-CCEEEEECCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC-CCC-CH
Q ss_conf 18999917987799997089-9889974044435577543--3520378999999999998698199999977-998-67
Q gi|254780238|r 19 GRAHVVSTFNNTRITITDPH-GNTIAWSSPKVVGFSGSRK--NSPFAAQVATDDCSAKAQNHGMSSLEVKVSG-LGA-GR 93 (129)
Q Consensus 19 GiihI~~t~NNTiitlTd~~-Gn~i~~~S~G~~gfkg~kk--~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG-~G~-GR 93 (129)
.-+.|+-|.+|...++.|.. +.++..+|+=...+++..+ +.-.||..+++.+++++++.||..| ++=+| +=. ||
T Consensus 22 pRL~V~rSnkhiyaQiIdd~~~~tl~saST~~k~~~~~~~~~~n~~aA~~vG~~la~ra~~~gI~~v-vfDR~g~~YhGr 100 (113)
T d2gycm1 22 TRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDV-SFDRSGFQYHGR 100 (113)
T ss_dssp CCCBEEECSSCEEEEEEETTTTEEEEEEETTGGGGTSCCSCSSSHHHHHHHHHHHHHHHHHHTCCCC-CCBCCSCCSSSH
T ss_pred CEEEEEEECCCEEEEEEECCCCCEEEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEE-EECCCCCCCCHH
T ss_conf 7599998178179999984699178874103566654327775328999999999999998799999-987999864149
Q ss_pred H-HHHHHHHHCCC
Q ss_conf 8-88778763693
Q gi|254780238|r 94 D-SALRALRAIGF 105 (129)
Q Consensus 94 ~-~~ik~l~~~gl 105 (129)
- ++.-++...||
T Consensus 101 Vka~ad~aRe~Gl 113 (113)
T d2gycm1 101 VQALADAAREAGL 113 (113)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999997489
No 6
>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]}
Probab=95.35 E-value=0.011 Score=34.63 Aligned_cols=60 Identities=22% Similarity=0.269 Sum_probs=48.9
Q ss_pred EEEEEECCCCEEEEEECC-CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 899991798779999708-998899740444355775433520378999999999998698199
Q gi|254780238|r 20 RAHVVSTFNNTRITITDP-HGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSL 82 (129)
Q Consensus 20 iihI~~t~NNTiitlTd~-~Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v 82 (129)
.+.|+-|.+|..+.+.|. +|.+|..+|+-...+++ ....+|..+++.+++++++.||..|
T Consensus 3 RL~V~rSnk~iyaQiIDd~~~~tl~s~St~~k~~k~---~~~~~A~~vG~~la~~ak~~gI~~v 63 (86)
T d2j01s1 3 RLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLKG---NKTEVARQVGRALAEKALALGIKQV 63 (86)
T ss_dssp EEECCBCSSCBCEEEEETTTTEEEEEECSTTTCCCS---CHHHHHHHHHHHHHHHHHHTSCCCC
T ss_pred EEEEEECCCEEEEEEEECCCCEEEEEEECCCHHHCC---CCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 799998178389999976798699998213111048---7789999999999999998799889
No 7
>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=89.60 E-value=0.075 Score=29.44 Aligned_cols=73 Identities=25% Similarity=0.221 Sum_probs=52.1
Q ss_pred EEEEEEECCCCEEEEEECCC-CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC-CC-CCHHH
Q ss_conf 18999917987799997089-98899740444355775433520378999999999998698199999977-99-86788
Q gi|254780238|r 19 GRAHVVSTFNNTRITITDPH-GNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSG-LG-AGRDS 95 (129)
Q Consensus 19 GiihI~~t~NNTiitlTd~~-Gn~i~~~S~G~~gfkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG-~G-~GR~~ 95 (129)
..+.|+-|.+|...++.|.. |.+|+.+|+=.... .....+|..+++.+++++++.||+.| ++=+| += -||-.
T Consensus 20 pRL~V~rSnkhiyaQiIDd~~~~tl~s~St~~~~~----~~~~~~a~~vG~~ia~~a~~kgi~~v-~FDR~g~~YHGrvk 94 (104)
T d2zjrl1 20 LRLSVYRSSKHIYAQIIDDSRGQTLAAASSAALKS----GNKTDTAAAVGKALAAAAAEKGIKQV-VFDRGSYKYHGRVK 94 (104)
T ss_dssp EEECCCTTSSCCCCCEEETTTTEECCCCCSCSCCT----TCSSSSHHHHHHHHHHHHHTTCCCCC-EECCCSSCSCSHHH
T ss_pred CEEEEEECCCEEEEEEEECCCCEEEEEECCCCCCC----CCHHHHHHHHHHHHHHHHHHCCCCEE-EECCCCCCCHHHHH
T ss_conf 67999970670689999657886787622443224----53156899999999999998799899-98789973213999
Q ss_pred H
Q ss_conf 8
Q gi|254780238|r 96 A 96 (129)
Q Consensus 96 ~ 96 (129)
+
T Consensus 95 a 95 (104)
T d2zjrl1 95 A 95 (104)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 8
>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=82.83 E-value=0.75 Score=23.29 Aligned_cols=63 Identities=11% Similarity=0.191 Sum_probs=44.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH-HCCCEEEEEEECCC
Q ss_conf 7754335203789999999999986981999999779986788877876-36936999996388
Q gi|254780238|r 53 SGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAGRDSALRALR-AIGFTIVSICDVTM 115 (129)
Q Consensus 53 kg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~GR~~~ik~l~-~~glkI~~I~D~T~ 115 (129)
.|+...|.|-...+.+.+.+..-...++...|.+.|||.=-..+.+-|. ..|.+|+.+.|...
T Consensus 4 ~gR~eATg~Gv~~~~~~~~~~~g~~~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g 67 (239)
T d1gtma1 4 LGRIEATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKG 67 (239)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHTTCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 8874064699999999999971999768999999798899999999999836720020013655
No 9
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}
Probab=81.87 E-value=0.87 Score=22.90 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=48.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 7754335203789999999999986981999999779986788877876369369999963889
Q gi|254780238|r 53 SGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAGRDSALRALRAIGFTIVSICDVTMI 116 (129)
Q Consensus 53 kg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~GR~~~ik~l~~~glkI~~I~D~T~i 116 (129)
.++...|-|-...+.+.+++. ....++...|.+.|||.=-..+.+-|...|-+|+.+.|..--
T Consensus 9 ~gR~eATG~Gv~~~~~~~~~~-~~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~ 71 (255)
T d1bgva1 9 LVRPEATGYGSVYYVEAVMKH-ENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGY 71 (255)
T ss_dssp TTTTTHHHHHHHHHHHHHHHH-TTCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEE
T ss_pred CCCCCCCHHHHHHHHHHHHHH-CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCE
T ss_conf 999751037799999999996-798978999999797889999999999859858999658861
No 10
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}
Probab=81.12 E-value=0.98 Score=22.58 Aligned_cols=63 Identities=19% Similarity=0.262 Sum_probs=48.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 5775433520378999999999998698199999977998678887787636936999996388
Q gi|254780238|r 52 FSGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAGRDSALRALRAIGFTIVSICDVTM 115 (129)
Q Consensus 52 fkg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~GR~~~ik~l~~~glkI~~I~D~T~ 115 (129)
-.++...|.|-.....+.+++..- ..+....|.+.|||.=-..+.+-|...|-+|+.|.|...
T Consensus 3 s~~r~~ATg~Gv~~~~~~~~~~~~-~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g 65 (242)
T d1v9la1 3 NPVREYATGFGVAVATREMAKKLW-GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDING 65 (242)
T ss_dssp CGGGGGHHHHHHHHHHHHHHHHHH-SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCC-CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 999842334779999999999759-997999999989889999999999976983799606542
No 11
>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}
Probab=77.83 E-value=0.74 Score=23.33 Aligned_cols=65 Identities=15% Similarity=0.132 Sum_probs=45.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH-HHCCCEEEEEEECCCCCC
Q ss_conf 775433520378999999999998698199999977998678887787-636936999996388988
Q gi|254780238|r 53 SGSRKNSPFAAQVATDDCSAKAQNHGMSSLEVKVSGLGAGRDSALRAL-RAIGFTIVSICDVTMIAH 118 (129)
Q Consensus 53 kg~kk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~G~GR~~~ik~l-~~~glkI~~I~D~T~ip~ 118 (129)
.|+...|.|-...+.+.+.+.. ...++...|.+.|||.=-..+.+-| +..|-+|+.+.|....-|
T Consensus 4 ~gR~eATg~Gv~~~~~~~~~~~-~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~ 69 (234)
T d1b26a1 4 KGREEATGRGVKVCAGLAMDVL-GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIY 69 (234)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHT-TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHC-CCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCEE
T ss_conf 8855240188999999999975-99868898999898889999999999866875487645887088
No 12
>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}
Probab=61.08 E-value=2.4 Score=20.21 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=44.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH-------HCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf 7543352037899999999999-------86981999999779986788877876369369999963889888
Q gi|254780238|r 54 GSRKNSPFAAQVATDDCSAKAQ-------NHGMSSLEVKVSGLGAGRDSALRALRAIGFTIVSICDVTMIAHN 119 (129)
Q Consensus 54 g~kk~t~~Aa~~~a~~~~~~~~-------~~gi~~v~v~ikG~G~GR~~~ik~l~~~glkI~~I~D~T~ip~n 119 (129)
|+...|-|-...+.+.+++... +.+++.-.|.+.|||.=-..+.+-|...|-+|+-|.|..-.-+|
T Consensus 2 GR~eATG~GV~~~~~~~l~~~~~~~~~gl~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~ 74 (293)
T d1hwxa1 2 GRISATGRGVFHGIENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWN 74 (293)
T ss_dssp THHHHHHHHHHHHHHHHHTCHHHHHHHTCCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHCC
T ss_conf 9850709899999999998554211206777878988999898899999999999879989999845223206
No 13
>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}
Probab=57.47 E-value=5.1 Score=18.18 Aligned_cols=30 Identities=33% Similarity=0.457 Sum_probs=11.0
Q ss_pred EEEEECCCC-CHHHHHHHHHHCCCEEEEEEE
Q ss_conf 999977998-678887787636936999996
Q gi|254780238|r 83 EVKVSGLGA-GRDSALRALRAIGFTIVSICD 112 (129)
Q Consensus 83 ~v~ikG~G~-GR~~~ik~l~~~glkI~~I~D 112 (129)
.|-+.|||. ||..+-..+....++|..|-|
T Consensus 3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd 33 (166)
T d1gado1 3 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND 33 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 9999787279999999983189819999957
No 14
>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}
Probab=56.92 E-value=5 Score=18.28 Aligned_cols=30 Identities=37% Similarity=0.470 Sum_probs=11.2
Q ss_pred EEEEECCCC-CHHHHHHHHHHCCCEEEEEEE
Q ss_conf 999977998-678887787636936999996
Q gi|254780238|r 83 EVKVSGLGA-GRDSALRALRAIGFTIVSICD 112 (129)
Q Consensus 83 ~v~ikG~G~-GR~~~ik~l~~~glkI~~I~D 112 (129)
.|-+.|||. ||..+-..+....++|..|-|
T Consensus 3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd 33 (169)
T d1u8fo1 3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAIND 33 (169)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9999798578999999997789957999668
No 15
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=47.62 E-value=8.5 Score=16.84 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=11.2
Q ss_pred EEEEECCCC-CHHHHHHHHH-HCCCEEEEEEECC
Q ss_conf 999977998-6788877876-3693699999638
Q gi|254780238|r 83 EVKVSGLGA-GRDSALRALR-AIGFTIVSICDVT 114 (129)
Q Consensus 83 ~v~ikG~G~-GR~~~ik~l~-~~glkI~~I~D~T 114 (129)
.|-|.|||. ||. ++|++. ...++|+.|-|..
T Consensus 4 rIaINGfGRIGR~-v~Ral~~~~dieiVaINd~~ 36 (172)
T d2czca2 4 KVGVNGYGTIGKR-VAYAVTKQDDMELIGITKTK 36 (172)
T ss_dssp EEEEECCSHHHHH-HHHHHHTCTTEEEEEEEESS
T ss_pred EEEEECCCHHHHH-HHHHHHHCCCCEEEEEECCC
T ss_conf 9999898788999-99999759996599996699
No 16
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}
Probab=43.21 E-value=10 Score=16.42 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=9.6
Q ss_pred EEEEEE--CCCCCHHHHHHHHHHCCCEEE
Q ss_conf 999997--799867888778763693699
Q gi|254780238|r 82 LEVKVS--GLGAGRDSALRALRAIGFTIV 108 (129)
Q Consensus 82 v~v~ik--G~G~GR~~~ik~l~~~glkI~ 108 (129)
+++++- |.+.+++.+-.-|. .|.+++
T Consensus 79 vDvViEcTG~f~~~~~~~~hl~-~G~K~v 106 (171)
T d1cf2o1 79 ADIVIDCTPEGIGAKNLKMYKE-KGIKAI 106 (171)
T ss_dssp CSEEEECCSTTHHHHHHHHHHH-TTCEEE
T ss_pred CCEEEECCCCCCCHHHHHHHHH-CCCCEE
T ss_conf 9899983677788899999998-699799
No 17
>d2i3oa1 d.153.1.6 (A:1-516) Hypothetical protein Ta0994 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=28.69 E-value=17 Score=14.98 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=17.3
Q ss_pred CCEEEEEECCCCCEEEEECCC
Q ss_conf 877999970899889974044
Q gi|254780238|r 28 NNTRITITDPHGNTIAWSSPK 48 (129)
Q Consensus 28 NNTiitlTd~~Gn~i~~~S~G 48 (129)
.-|++++.|..||.++.+++-
T Consensus 330 ~Tth~svvD~~GnaVs~T~Si 350 (516)
T d2i3oa1 330 DTTYFSISDSEGRSVSIIQSN 350 (516)
T ss_dssp EEEEEEEEETTSCEEEEEEEE
T ss_pred CCEEEEEECCCCCEEEECCCC
T ss_conf 977999997889888630346
No 18
>d2c4ka2 c.61.1.2 (A:167-350) PRPP synthetase-associated protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.11 E-value=19 Score=14.70 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEE-ECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 89999999999986981999999-779986788877876369369999963889888868888
Q gi|254780238|r 64 QVATDDCSAKAQNHGMSSLEVKV-SGLGAGRDSALRALRAIGFTIVSICDVTMIAHNGCRPRK 125 (129)
Q Consensus 64 ~~~a~~~~~~~~~~gi~~v~v~i-kG~G~GR~~~ik~l~~~glkI~~I~D~T~ip~nGcRp~K 125 (129)
-.+...+++.+++.|-+.|.+.. .|.-.+ .+++-|..+.+.=+.++|..|.+.+....+|
T Consensus 96 G~T~~~a~~~Lk~~GA~~v~~~~tH~~~~~--~a~~~l~~~~i~~i~~tntip~~~~~~~~~k 156 (184)
T d2c4ka2 96 VESFVAAAEILKERGAYKIYVMATHGILSA--EAPRLIEESSVDEVVVTNTVPHEVQKLQCPK 156 (184)
T ss_dssp THHHHHHHHHHHTTTEEEEEEEEEEECCCT--THHHHHHHSSCCEEEEEBTSCCHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEECCCC--HHHHHHHCCCCCEEEEECCCCCCHHHCCCCC
T ss_conf 577999999997426555347887503176--1777752477457999567367166537998
No 19
>g2dg5.1 d.153.1.6 (A:37-387,B:391-580) Gamma-glutamyltranspeptidase, GGT {Escherichia coli [TaxId: 562]}
Probab=21.57 E-value=23 Score=14.16 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=17.9
Q ss_pred CCCCEEEEEECCCCCEEEEECC
Q ss_conf 7987799997089988997404
Q gi|254780238|r 26 TFNNTRITITDPHGNTIAWSSP 47 (129)
Q Consensus 26 t~NNTiitlTd~~Gn~i~~~S~ 47 (129)
+..-|++++.|..||.+++.++
T Consensus 349 ~~~Tt~~sv~D~~GnaVs~t~S 370 (541)
T g2dg5.1 349 PYETTHYSVVDKDGNAVAVTYT 370 (541)
T ss_dssp GGCCEEEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEECC
T ss_conf 9996599999589998999605
No 20
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Probab=20.88 E-value=24 Score=14.07 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=6.8
Q ss_pred HHCCCCEEEEEEECCCCC
Q ss_conf 986981999999779986
Q gi|254780238|r 75 QNHGMSSLEVKVSGLGAG 92 (129)
Q Consensus 75 ~~~gi~~v~v~ikG~G~G 92 (129)
.+.|.+.|.| ..|.++
T Consensus 107 l~~gakkVii--SAP~kd 122 (168)
T d2g82a1 107 LEGGAKKVII--TAPAKG 122 (168)
T ss_dssp HHTTCSEEEE--SSCCBS
T ss_pred HCCCCCEEEE--CCCCCC
T ss_conf 0356634552--145555
No 21
>d2nlza1 d.153.1.6 (A:3-539) Cephalosporin acylase {Bacillus halodurans [TaxId: 86665]}
Probab=20.07 E-value=25 Score=13.96 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=17.9
Q ss_pred CCCEEEEEECCCCCEEEEECCC
Q ss_conf 9877999970899889974044
Q gi|254780238|r 27 FNNTRITITDPHGNTIAWSSPK 48 (129)
Q Consensus 27 ~NNTiitlTd~~Gn~i~~~S~G 48 (129)
..-|++++.|..||.++.+++-
T Consensus 354 ~~Tth~svvD~~GnaVs~T~Si 375 (537)
T d2nlza1 354 GGTVYLATADGDGNMVSFIQSN 375 (537)
T ss_dssp --CEEEEEEETTSCEEEEEEEC
T ss_pred CCCEEEEEECCCCCEEEEECCC
T ss_conf 9867999984899789872366
Done!