RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780238|ref|YP_003064651.1| 30S ribosomal protein S11
[Candidatus Liberibacter asiaticus str. psy62]
         (129 letters)



>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli
           [TaxId: 562]}
          Length = 117

 Score =  138 bits (350), Expect = 1e-34
 Identities = 61/117 (52%), Positives = 82/117 (70%)

Query: 13  RKNIVSGRAHVVSTFNNTRITITDPHGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSA 72
           RK +  G AH+ ++FNNT +TITD  GN + W++    GF GSRK++PFAAQVA + C+ 
Sbjct: 1   RKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCAD 60

Query: 73  KAQNHGMSSLEVKVSGLGAGRDSALRALRAIGFTIVSICDVTMIAHNGCRPRKRRRI 129
             + +G+ +LEV V G G GR+S +RAL A GF I +I DVT I HNGCRP K+RR+
Sbjct: 61  AVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV 117


>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus
           thermophilus [TaxId: 274]}
          Length = 119

 Score =  133 bits (337), Expect = 3e-33
 Identities = 60/116 (51%), Positives = 85/116 (73%)

Query: 13  RKNIVSGRAHVVSTFNNTRITITDPHGNTIAWSSPKVVGFSGSRKNSPFAAQVATDDCSA 72
           ++ + SGRA++ +++NNT +TITDP GN I WSS  V+G+ GSRK +P+AAQ+A  D + 
Sbjct: 1   KRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAK 60

Query: 73  KAQNHGMSSLEVKVSGLGAGRDSALRALRAIGFTIVSICDVTMIAHNGCRPRKRRR 128
           KA  +GM S++V V G GAGR+ A+RAL+A G  + SI D T + HNGCRP+K+ R
Sbjct: 61  KAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFR 116


>d2uubn1 g.39.1.7 (N:2-61) Ribosomal protein S14 {Thermus
          thermophilus [TaxId: 274]}
          Length = 60

 Score = 24.2 bits (53), Expect = 3.7
 Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 4/34 (11%)

Query: 2  PKSPSRIRNRERKNIVSGRAH-VVSTFNNTRITI 34
          PK   R   R    +  GRA  V   F   RI +
Sbjct: 13 PKFKVRAYTR---CVRCGRARSVYRFFGLCRICL 43


>d2imha1 d.153.1.7 (A:1-229) Hypothetical protein SPO2555
           {Silicibacter pomeroyi [TaxId: 89184]}
          Length = 229

 Score = 24.1 bits (52), Expect = 4.5
 Identities = 9/49 (18%), Positives = 16/49 (32%)

Query: 16  IVSGRAHVVSTFNNTRITITDPHGNTIAWSSPKVVGFSGSRKNSPFAAQ 64
            V+      S     ++   D  GN  A++  +     GS   +   A 
Sbjct: 68  AVNHVTSQDSGRAYRQLAAMDLLGNAAAFTGSENQDIKGSVTFASGIAS 116


>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 279

 Score = 23.4 bits (49), Expect = 5.9
 Identities = 7/24 (29%), Positives = 9/24 (37%)

Query: 19  GRAHVVSTFNNTRITITDPHGNTI 42
           G   +    NN  +TI    G  I
Sbjct: 211 GEILIADNHNNFNLTIFTQDGQLI 234


>d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 338

 Score = 23.2 bits (49), Expect = 6.7
 Identities = 18/116 (15%), Positives = 26/116 (22%), Gaps = 25/116 (21%)

Query: 25  STFNNTRITITDPHGNTIAWSSPK-----------------VVGFSGSRKNSPFAAQVAT 67
           S F   R T    HG                           V +    +     A   T
Sbjct: 64  SNFQLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRGSRTEYTQASYNT 123

Query: 68  DDCSAK--------AQNHGMSSLEVKVSGLGAGRDSALRALRAIGFTIVSICDVTM 115
               A+        +   G S   V + G   G      A R +   +  I  +  
Sbjct: 124 RVVGAEIAFLVQVLSTEMGYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDP 179


>d3c0na2 f.8.1.1 (A:85-468) (Pro)aerolysin, pore-forming lobe
           {Aeromonas hydrophila [TaxId: 644]}
          Length = 384

 Score = 22.9 bits (49), Expect = 9.3
 Identities = 10/49 (20%), Positives = 14/49 (28%)

Query: 7   RIRNRERKNIVSGRAHVVSTFNNTRITITDPHGNTIAWSSPKVVGFSGS 55
              +R+    V G A   S    +   +T        WS     G S  
Sbjct: 106 TQSDRQLVKTVVGWAVNDSDTPQSGYDVTLRGDTATNWSKTNTYGLSEK 154


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.130    0.385 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 462,663
Number of extensions: 18210
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 14
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.5 bits)