HHSEARCH alignment of GI: 254780239 and SCOP domain: d1k3xa1

Alignment

Probab=96.57  E-value=0.0012  Score=41.40  Aligned_cols=51  Identities=14%  Similarity=0.302  Sum_probs=43.6

Q ss_pred             CCCEEEEEE---EEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHC
Q ss_conf             985766643---120071768999999980888212002279899999998612
Q gi|254780239|r   11 RAKRVVRAL---CYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQAIE   61 (122)
Q Consensus        11 ~~K~i~~aL---t~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I~   61 (122)
                      .+++|.-+|   +.+-|||...+..||..++|+|+.++++|+++|+..|-+.+-
T Consensus        25 ~~~~Ik~~LlDQ~~~aGIGN~~~~EiL~~a~i~P~~~~~~L~~~~~~~L~~~~~   78 (89)
T d1k3xa1          25 RNRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALL   78 (89)
T ss_dssp             TTSCHHHHTTCTTTSBTCCHHHHHHHHHHHTCCSSCCGGGSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHH
T ss_conf             555299998468630354758999999996666047130199999999999999

SCOP domain information

class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Middle domain of MutM-like DNA repair proteins
domain: Endonuclease VIII
species: Escherichia coli [TaxId: 562]