Query gi|254780239|ref|YP_003064652.1| 30S ribosomal protein S13 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 122 No_of_seqs 126 out of 1448 Neff 6.1 Searched_HMMs 13730 Date Tue May 24 02:09:38 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780239.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2uubm1 a.156.1.1 (M:2-126) Ri 100.0 0 0 304.1 6.0 121 2-122 1-121 (125) 2 d2gy9m1 a.156.1.1 (M:1-114) Ri 100.0 7.1E-44 0 291.0 6.0 114 2-116 1-114 (114) 3 d2hkja1 a.156.1.3 (A:229-306) 97.1 0.00018 1.3E-08 46.4 4.0 49 14-62 25-74 (78) 4 d1k82a1 a.156.1.2 (A:129-216) 96.7 0.00093 6.8E-08 42.0 4.5 51 12-62 22-75 (88) 5 d1r2za1 a.156.1.2 (A:135-228) 96.7 0.00098 7.1E-08 41.9 4.5 51 11-61 21-74 (94) 6 d1tdza1 a.156.1.2 (A:132-219) 96.6 0.001 7.6E-08 41.7 4.4 49 13-61 23-74 (88) 7 d1ee8a1 a.156.1.2 (A:122-210) 96.6 0.0011 7.7E-08 41.7 4.3 42 20-61 33-74 (89) 8 d1k3xa1 a.156.1.2 (A:125-213) 96.6 0.0012 8.5E-08 41.4 4.3 51 11-61 25-78 (89) 9 d1tdha1 a.156.1.2 (A:132-246) 90.7 0.02 1.5E-06 33.7 -0.2 49 12-60 27-78 (115) 10 d2fmpa2 a.60.12.1 (A:92-148) D 89.2 0.11 8.1E-06 29.1 2.6 22 18-40 8-29 (57) 11 d2i0za2 e.74.1.1 (A:193-361) F 85.5 0.57 4.1E-05 24.7 4.5 50 11-62 103-152 (169) 12 d2a1jb1 a.60.2.5 (B:219-296) D 85.4 0.18 1.3E-05 27.8 2.0 40 14-55 16-55 (78) 13 d1jmsa3 a.60.12.1 (A:243-302) 83.6 0.16 1.2E-05 28.2 1.0 23 17-40 8-30 (60) 14 d2bcqa2 a.60.12.1 (A:329-385) 83.1 0.17 1.2E-05 28.0 1.0 42 15-57 6-50 (57) 15 d1pzna1 a.60.4.1 (A:35-95) DNA 82.7 0.41 3E-05 25.6 2.8 59 18-84 2-60 (61) 16 d2bgwa1 a.60.2.5 (A:160-229) D 82.6 0.27 2E-05 26.7 1.9 38 16-55 12-49 (70) 17 d2i1qa1 a.60.4.1 (A:5-64) DNA 80.3 0.94 6.8E-05 23.4 3.9 58 19-84 1-58 (60) 18 d1x2ia1 a.60.2.5 (A:2-69) ATP- 73.4 1.1 7.8E-05 23.0 2.6 37 16-54 9-45 (68) 19 d1qyra_ c.66.1.24 (A:) High le 72.7 1.3 9.6E-05 22.5 3.0 32 31-62 219-250 (252) 20 d1bvsa2 a.60.2.1 (A:64-134) DN 72.6 0.51 3.7E-05 25.0 0.8 43 13-57 5-47 (71) 21 d1kfta_ a.60.2.3 (A:) Excinucl 70.3 0.46 3.4E-05 25.3 0.2 37 18-56 3-39 (56) 22 d1ixra1 a.60.2.1 (A:63-135) DN 70.2 0.64 4.6E-05 24.4 0.9 27 13-39 6-32 (73) 23 d2axtu1 a.60.12.2 (U:37-134) P 68.4 1.9 0.00014 21.5 3.0 54 9-62 19-75 (98) 24 d2a1ja1 a.60.2.5 (A:837-898) D 67.4 1.7 0.00013 21.7 2.7 37 19-57 5-41 (62) 25 d2gqfa2 e.74.1.1 (A:195-342) H 65.5 1.5 0.00011 22.0 2.1 50 10-62 84-133 (148) 26 d1cuka2 a.60.2.1 (A:65-142) DN 64.0 0.91 6.6E-05 23.5 0.7 43 13-57 5-47 (78) 27 d1pu6a_ a.96.1.5 (A:) 3-Methyl 63.3 4.2 0.0003 19.4 3.9 43 15-61 118-160 (217) 28 d3bzka1 a.60.2.6 (A:474-563) T 52.7 5.9 0.00043 18.4 3.3 53 6-60 26-85 (90) 29 d1b43a1 a.60.7.1 (A:220-339) F 50.1 5.2 0.00038 18.7 2.7 39 21-60 21-59 (120) 30 d2duya1 a.60.2.7 (A:11-75) Unc 49.0 5.7 0.00042 18.5 2.7 49 12-60 12-63 (65) 31 d2noha1 a.96.1.3 (A:136-325) 8 45.6 3 0.00022 20.2 0.9 40 16-58 102-141 (190) 32 d1mpga1 a.96.1.3 (A:100-282) 3 44.4 3.2 0.00024 20.0 0.9 42 14-62 105-148 (183) 33 d1gm5a2 b.40.4.9 (A:106-285) R 43.6 4.8 0.00035 19.0 1.6 26 14-40 7-32 (180) 34 d2edua1 a.60.2.7 (A:8-98) KIF2 43.1 6.5 0.00048 18.2 2.3 42 18-59 34-82 (91) 35 d1ul1x1 a.60.7.1 (X:218-357) F 40.0 6.9 0.0005 18.0 2.0 20 20-39 19-38 (140) 36 d1jiha2 e.8.1.7 (A:1-389) DNA 38.3 3.8 0.00027 19.6 0.4 26 17-42 300-325 (389) 37 d1rxwa1 a.60.7.1 (A:220-324) F 38.3 7.3 0.00054 17.8 1.9 19 20-38 19-37 (105) 38 d1kg2a_ a.96.1.2 (A:) Catalyti 37.8 5.1 0.00037 18.8 1.0 40 17-60 109-148 (224) 39 d1xo1a1 a.60.7.1 (A:186-290) T 36.3 8.4 0.00062 17.5 1.9 20 19-38 21-40 (105) 40 d1keaa_ a.96.1.2 (A:) Thymine- 36.2 5.8 0.00042 18.5 1.1 39 16-58 112-150 (217) 41 d1rrqa1 a.96.1.2 (A:9-229) Cat 35.2 5.9 0.00043 18.4 1.0 40 17-60 107-146 (221) 42 d1a77a1 a.60.7.1 (A:209-316) F 34.3 8.1 0.00059 17.6 1.6 19 21-39 21-39 (108) 43 d1xbpg1 a.4.7.1 (G:72-143) Rib 32.3 16 0.0012 15.7 3.9 51 27-78 1-57 (72) 44 d1orna_ a.96.1.1 (A:) Endonucl 31.5 7.7 0.00056 17.7 1.1 47 7-60 103-149 (214) 45 d2abka_ a.96.1.1 (A:) Endonucl 30.1 7.8 0.00057 17.7 0.9 22 17-38 109-130 (211) 46 d1vqoi1 a.4.7.1 (I:71-140) Rib 29.4 18 0.0013 15.4 4.2 49 27-76 3-57 (70) 47 d1jx4a2 e.8.1.7 (A:1-240) DinB 29.3 18 0.0013 15.4 3.4 40 17-60 178-217 (240) 48 d1zeta2 e.8.1.7 (A:27-299) DNA 29.0 18 0.0013 15.4 2.7 21 19-40 210-230 (273) 49 d1im4a_ e.8.1.7 (A:) DinB homo 25.6 15 0.0011 15.9 1.7 21 70-90 129-149 (209) 50 d1ngna_ a.96.1.2 (A:) Mismatch 25.3 12 0.00087 16.5 1.2 20 18-37 94-113 (144) 51 d1vmaa2 c.37.1.10 (A:82-294) G 23.9 16 0.0011 15.8 1.6 57 7-64 4-69 (213) 52 d1dgsa1 a.60.2.2 (A:401-581) N 20.5 27 0.0019 14.4 2.3 37 17-56 108-144 (181) 53 d1vdda_ e.49.1.1 (A:) Recombin 20.3 18 0.0013 15.5 1.2 74 15-95 10-108 (199) No 1 >d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus thermophilus [TaxId: 274]} Probab=100.00 E-value=0 Score=304.10 Aligned_cols=121 Identities=59% Similarity=0.915 Sum_probs=115.9 Q ss_pred CEEECCCCCCCCEEEEEEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 45516758998576664312007176899999998088821200227989999999861245643337889999999999 Q gi|254780239|r 2 ARIAGVNIPRAKRVVRALCYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQAIEQDYQVEGDLRRTVAMNIKRL 81 (122) Q Consensus 2 vrI~g~~i~~~K~i~~aLt~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I~~~~~i~~~L~~~~~~~i~rl 81 (122) +||+|+|||++|+|.+|||+|||||+++|.+||+.+||||++++++||++|+++|+++|+++|.+|+||++.+.+||+|| T Consensus 1 aRI~g~di~~~K~v~~ALt~I~GIG~~~A~~Ic~~lgId~~~k~~~Lt~~qi~~I~~~i~~~~~i~~~L~~~~~~dIkrl 80 (125) T d2uubm1 1 ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRL 80 (125) T ss_dssp CCCSTTCCCCSSBHHHHHTTSTTCCHHHHHHHHHTTTCCTTSBGGGCCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 92268669999788876320558189999999998299833333525699999999998411164778999999989999 Q ss_pred HHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 73031001233179878770778776577776655423469 Q gi|254780239|r 82 MDLGCYRGLRHRRGLPVRGQRTHTNARTRKKFGKGGVARKR 122 (122) Q Consensus 82 ~~i~syrG~RH~~gLpvRGQRT~tn~rt~k~~~~~~~~kkk 122 (122) ++|+||||+||.+|||||||||||||||+|+..+++.++|| T Consensus 81 ~~i~~yRG~RH~~gLpvRGQRT~tN~rt~kg~~~~v~~kk~ 121 (125) T d2uubm1 81 MDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKKK 121 (125) T ss_dssp HHTTCHHHHHHHHTCCSSSCCCSSCCHHHHCSCCCCCCCSS T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 87610333432279987777787775466888542555667 No 2 >d2gy9m1 a.156.1.1 (M:1-114) Ribosomal protein S13 {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=7.1e-44 Score=290.99 Aligned_cols=114 Identities=55% Similarity=0.862 Sum_probs=110.6 Q ss_pred CEEECCCCCCCCEEEEEEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 45516758998576664312007176899999998088821200227989999999861245643337889999999999 Q gi|254780239|r 2 ARIAGVNIPRAKRVVRALCYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQAIEQDYQVEGDLRRTVAMNIKRL 81 (122) Q Consensus 2 vrI~g~~i~~~K~i~~aLt~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I~~~~~i~~~L~~~~~~~i~rl 81 (122) +||+|+|||++|+|.+|||+|||||+++|.+||..+||||++++++||++|++.|+++|+ +|.+|+||++.+++||+|| T Consensus 1 aRI~g~dip~~K~v~~ALt~I~GIG~~~A~~Ic~~lgid~~~kv~~Lt~~qi~~l~~~i~-~~~i~~~L~~~~~~dI~rl 79 (114) T d2gy9m1 1 ARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVA-KFVVEGDLRREISMSIKRL 79 (114) T ss_dssp CCCSSSCCCCSSBHHHHHTTSSSCCHHHHHHHHHHHTCCTTSBTTSCCHHHHHHHHHHHH-SSCCSHHHHHHHHHHHHHT T ss_pred CCCCCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHH T ss_conf 912586689997888872315684899999999981989531357456999999999987-1055889999999989999 Q ss_pred HHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 73031001233179878770778776577776655 Q gi|254780239|r 82 MDLGCYRGLRHRRGLPVRGQRTHTNARTRKKFGKG 116 (122) Q Consensus 82 ~~i~syrG~RH~~gLpvRGQRT~tn~rt~k~~~~~ 116 (122) ++|+||||+||.+|||||||||||||||+|+.+|+ T Consensus 80 ~~I~~yrG~RH~~gLpvRGQrT~tNart~k~~~k~ 114 (114) T d2gy9m1 80 MDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRKP 114 (114) T ss_dssp TTTTCHHHHHHHCCSCCCCCCSSSSCHHHHCSCCC T ss_pred HHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 87500102210479987877787776366899998 No 3 >d2hkja1 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit middle domain {Archaeon Sulfolobus shibatae [TaxId: 2286]} Probab=97.14 E-value=0.00018 Score=46.40 Aligned_cols=49 Identities=18% Similarity=0.398 Sum_probs=42.0 Q ss_pred EEEEEEEE-EECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHCC Q ss_conf 76664312-00717689999999808882120022798999999986124 Q gi|254780239|r 14 RVVRALCY-IHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQAIEQ 62 (122) Q Consensus 14 ~i~~aLt~-I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I~~ 62 (122) ++...|+. +-|||..+|..||..+||+|++++++|+++|+..|-+.|.+ T Consensus 25 k~~l~lq~~f~GvGn~~a~Eil~~agi~P~~~~~~L~~~e~~~L~~air~ 74 (78) T d2hkja1 25 TIKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKK 74 (78) T ss_dssp BHHHHHHHHSSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 59999888855668999999999807775660241999999999999860 No 4 >d1k82a1 a.156.1.2 (A:129-216) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]} Probab=96.70 E-value=0.00093 Score=42.02 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=42.7 Q ss_pred CCEEEEEE---EEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHCC Q ss_conf 85766643---1200717689999999808882120022798999999986124 Q gi|254780239|r 12 AKRVVRAL---CYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQAIEQ 62 (122) Q Consensus 12 ~K~i~~aL---t~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I~~ 62 (122) +.+|.-+| ..|-|||...+..||..++|+|+.++.+|+++|+..|-+.+.. T Consensus 22 ~~~ik~~LlDQ~~iaGiGN~y~~EiLf~a~I~P~~~~~~L~~~~~~~L~~~i~~ 75 (88) T d1k82a1 22 KTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKA 75 (88) T ss_dssp CSBHHHHHTCTTTCSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHH T ss_pred CCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHH T ss_conf 851899997053335521189999999977885681877899999999999999 No 5 >d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]} Probab=96.68 E-value=0.00098 Score=41.88 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=43.6 Q ss_pred CCCEEEEEE---EEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHC Q ss_conf 985766643---120071768999999980888212002279899999998612 Q gi|254780239|r 11 RAKRVVRAL---CYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQAIE 61 (122) Q Consensus 11 ~~K~i~~aL---t~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I~ 61 (122) .+.+|.-+| +.+-|||...+..||..++|+|..++++|+++|+..|-+.+. T Consensus 21 ~~~~ik~~LlDQ~~~aGiGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~L~~~~~ 74 (94) T d1r2za1 21 TKRSVKALLLDQTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMV 74 (94) T ss_dssp CCSBHHHHHHCTTTSSSCCHHHHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHH T ss_pred CCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 886289999836545786508999999999726641497866779999999999 No 6 >d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]} Probab=96.64 E-value=0.001 Score=41.73 Aligned_cols=49 Identities=24% Similarity=0.382 Sum_probs=41.5 Q ss_pred CEEEEEE---EEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHC Q ss_conf 5766643---120071768999999980888212002279899999998612 Q gi|254780239|r 13 KRVVRAL---CYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQAIE 61 (122) Q Consensus 13 K~i~~aL---t~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I~ 61 (122) ++|.-+| +.|-|||...|..||..++|+|+.++.+|+++|+..|-+.+. T Consensus 23 ~~ik~~LldQ~~iaGIGNiy~~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~ 74 (88) T d1tdza1 23 KKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSII 74 (88) T ss_dssp SBHHHHHHTSSSSSCCCHHHHHHHHHHTTCCTTCBGGGCCHHHHHHHHHHHH T ss_pred CCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHH T ss_conf 5089999855434785768999999999758256465769999999999999 No 7 >d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]} Probab=96.61 E-value=0.0011 Score=41.67 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=38.8 Q ss_pred EEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHC Q ss_conf 120071768999999980888212002279899999998612 Q gi|254780239|r 20 CYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQAIE 61 (122) Q Consensus 20 t~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I~ 61 (122) ..|-|||...+..||..++|+|..++++|+++|+..|-+.+. T Consensus 33 ~~iaGiGN~y~~EiLf~a~I~P~~~~~~Ls~~e~~~L~~~i~ 74 (89) T d1ee8a1 33 RLAAGVGNIYADEALFRARLSPFRPARSLTEEEARRLYRALR 74 (89) T ss_dssp SSSTTCCHHHHHHHHHHTTCCSSSBGGGCCHHHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHH T ss_conf 444777758999999999767135453599999999999999 No 8 >d1k3xa1 a.156.1.2 (A:125-213) Endonuclease VIII {Escherichia coli [TaxId: 562]} Probab=96.57 E-value=0.0012 Score=41.40 Aligned_cols=51 Identities=14% Similarity=0.302 Sum_probs=43.6 Q ss_pred CCCEEEEEE---EEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHC Q ss_conf 985766643---120071768999999980888212002279899999998612 Q gi|254780239|r 11 RAKRVVRAL---CYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQAIE 61 (122) Q Consensus 11 ~~K~i~~aL---t~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I~ 61 (122) .+++|.-+| +.+-|||...+..||..++|+|+.++++|+++|+..|-+.+- T Consensus 25 ~~~~Ik~~LlDQ~~~aGIGN~~~~EiL~~a~i~P~~~~~~L~~~~~~~L~~~~~ 78 (89) T d1k3xa1 25 RNRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALL 78 (89) T ss_dssp TTSCHHHHTTCTTTSBTCCHHHHHHHHHHHTCCSSCCGGGSCHHHHHHHHHHHH T ss_pred CCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHH T ss_conf 555299998468630354758999999996666047130199999999999999 No 9 >d1tdha1 a.156.1.2 (A:132-246) Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapiens) [TaxId: 9606]} Probab=90.69 E-value=0.02 Score=33.71 Aligned_cols=49 Identities=22% Similarity=0.363 Sum_probs=40.3 Q ss_pred CCEEEEEE---EEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHH Q ss_conf 85766643---12007176899999998088821200227989999999861 Q gi|254780239|r 12 AKRVVRAL---CYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQAI 60 (122) Q Consensus 12 ~K~i~~aL---t~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I 60 (122) +++|.-+| ..|-|||...+..||..++|+|..++.+|++++...+.... T Consensus 27 ~~~i~~~LldQ~~~aGiGN~~~~EiLf~a~i~P~~~~~~l~~~~~~~l~~~~ 78 (115) T d1tdha1 27 DRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEALQQHRPSPE 78 (115) T ss_dssp GSBHHHHTTCTTTSTTCCHHHHHHHHHHHTCCTTSBHHHHHGGGC-----CC T ss_pred CCCHHHHHHCCCHHCCCCHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHH T ss_conf 8849999854643125138999999998489977704043899996777667 No 10 >d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]} Probab=89.21 E-value=0.11 Score=29.14 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.1 Q ss_pred EEEEEECCCHHHHHHHHHHCCCC Q ss_conf 43120071768999999980888 Q gi|254780239|r 18 ALCYIHGIGFKSSQDICNKLAIP 40 (122) Q Consensus 18 aLt~I~GIG~~~A~~Ic~~lgId 40 (122) .|+.|||||+++|..+... |+. T Consensus 8 ~l~~I~GvGp~~A~~l~~~-Gi~ 29 (57) T d2fmpa2 8 FLTRVSGIGPSAARKFVDE-GIK 29 (57) T ss_dssp HHTTSTTCCHHHHHHHHHT-TCC T ss_pred HHHCCCCCCHHHHHHHHHH-CCC T ss_conf 8853443149999999994-899 No 11 >d2i0za2 e.74.1.1 (A:193-361) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Probab=85.51 E-value=0.57 Score=24.74 Aligned_cols=50 Identities=10% Similarity=0.016 Sum_probs=38.7 Q ss_pred CCCEEEEEEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHCC Q ss_conf 9857666431200717689999999808882120022798999999986124 Q gi|254780239|r 11 RAKRVVRALCYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQAIEQ 62 (122) Q Consensus 11 ~~K~i~~aLt~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I~~ 62 (122) +++.+.-.|.. -+-.+.+..+|..+|+++++++++|+.+++.+|...+.+ T Consensus 103 ~~~~~~~~l~~--~lp~~l~~~ll~~~~i~~~~~~~~ls~~~~~~L~~~Lk~ 152 (169) T d2i0za2 103 PKKGIKNVLKG--YVPERYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKE 152 (169) T ss_dssp TTSBHHHHTTT--SSCHHHHHHHHHHTTCCTTSBGGGSCHHHHHHHHHHHHH T ss_pred CCHHHHHHCCC--CCCHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHC T ss_conf 41347664200--151578999999809962378777899999999999968 No 12 >d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=85.43 E-value=0.18 Score=27.76 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=28.4 Q ss_pred EEEEEEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHH Q ss_conf 766643120071768999999980888212002279899999 Q gi|254780239|r 14 RVVRALCYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQ 55 (122) Q Consensus 14 ~i~~aLt~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~ 55 (122) .+..+|+.|.|||...|..++...| .-..+-.-+.+++.. T Consensus 16 ~~~~~L~~I~gIg~~~a~~L~~~F~--s~~~i~~A~~eeL~~ 55 (78) T d2a1jb1 16 RVTECLTTVKSVNKTDSQTLLTTFG--SLEQLIAASREDLAL 55 (78) T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHS--SHHHHHSCCHHHHHT T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHC--CCHHHHHHHHHHHHH T ss_conf 9999863899759999999999939--819988552788887 No 13 >d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} Probab=83.63 E-value=0.16 Score=28.16 Aligned_cols=23 Identities=13% Similarity=0.397 Sum_probs=19.6 Q ss_pred EEEEEEECCCHHHHHHHHHHCCCC Q ss_conf 643120071768999999980888 Q gi|254780239|r 17 RALCYIHGIGFKSSQDICNKLAIP 40 (122) Q Consensus 17 ~aLt~I~GIG~~~A~~Ic~~lgId 40 (122) ..|+.|||||+++|...... |+. T Consensus 8 ~~f~~I~GvGp~~A~~l~~~-Gi~ 30 (60) T d1jmsa3 8 KLFTSVFGVGLKTAEKWFRM-GFR 30 (60) T ss_dssp HHHHTSTTCCHHHHHHHHHT-TCC T ss_pred HHHHCCCCCCHHHHHHHHHH-CCC T ss_conf 99861163229999999993-899 No 14 >d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Probab=83.13 E-value=0.17 Score=27.96 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=26.3 Q ss_pred EEEEEEEEECCCHHHHHHHHHHCCCCHHH---HHCCCCHHHHHHHH Q ss_conf 66643120071768999999980888212---00227989999999 Q gi|254780239|r 15 VVRALCYIHGIGFKSSQDICNKLAIPPER---RVHQLVESEVIQIR 57 (122) Q Consensus 15 i~~aLt~I~GIG~~~A~~Ic~~lgId~~~---kv~~Lt~~qi~~l~ 57 (122) +.-.++.|||||+++|...... |+..=. .-.+||..|..-|. T Consensus 6 ~l~~ft~I~GvGp~~A~~l~~~-Gi~ti~dLr~~~~Ln~~Q~iGLk 50 (57) T d2bcqa2 6 VLELFSNIWGAGTKTAQMWYQQ-GFRSLEDIRSQASLTTQQAIGLK 50 (57) T ss_dssp HHHHHHTSTTCCHHHHHHHHHT-TCCSHHHHHHHCCCCHHHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHHH-CCCCHHHHHHCCCCCHHHHHHHH T ss_conf 9999862262239999999994-89889999756789999999699 No 15 >d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=82.65 E-value=0.41 Score=25.59 Aligned_cols=59 Identities=7% Similarity=0.145 Sum_probs=40.4 Q ss_pred EEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC Q ss_conf 4312007176899999998088821200227989999999861245643337889999999999730 Q gi|254780239|r 18 ALCYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQAIEQDYQVEGDLRRTVAMNIKRLMDL 84 (122) Q Consensus 18 aLt~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I~~~~~i~~~L~~~~~~~i~rl~~i 84 (122) +|..|-|||+.+|..+... |+..-..+-+.+.+++.++.- ++..+-..+.+..+.+.++ T Consensus 2 ~L~~i~GIG~~~a~~L~~~-g~~sv~~l~~a~~~eL~~i~G-------i~~~~A~~i~~~ar~~~~~ 60 (61) T d1pzna1 2 SIEDLPGVGPATAEKLREA-GYDTLEAIAVASPIELKEVAG-------ISEGTALKIIQAARKAANL 60 (61) T ss_dssp CSSCCTTCCHHHHHHHHTT-TCCSHHHHHTCCHHHHHHHHC-------CCHHHHHHHHHHHHHHCST T ss_pred CCCCCCCCCHHHHHHHHHH-CCCCHHHHHHCCHHHHHHCCC-------CCHHHHHHHHHHHHHHCCC T ss_conf 5021799799999999994-499999998599999977799-------9999999999999987269 No 16 >d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Probab=82.63 E-value=0.27 Score=26.71 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=27.3 Q ss_pred EEEEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHH Q ss_conf 6643120071768999999980888212002279899999 Q gi|254780239|r 16 VRALCYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQ 55 (122) Q Consensus 16 ~~aLt~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~ 55 (122) .++|+.|-|||+.+|..|+...| + -..+-.-+.+++.+ T Consensus 12 ~~~L~~IpgIG~~~a~~L~~~F~-s-~~~l~~As~eeL~~ 49 (70) T d2bgwa1 12 LYILQSFPGIGRRTAERILERFG-S-LERFFTASKAEISK 49 (70) T ss_dssp HHHHHTSTTCCHHHHHHHHHHHS-S-HHHHTTCCHHHHHH T ss_pred HHHHCCCCCCCHHHHHHHHHHHC-C-HHHHHHCCHHHHHC T ss_conf 99980899957999999999829-8-89998869999975 No 17 >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} Probab=80.33 E-value=0.94 Score=23.39 Aligned_cols=58 Identities=16% Similarity=0.260 Sum_probs=40.3 Q ss_pred EEEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC Q ss_conf 312007176899999998088821200227989999999861245643337889999999999730 Q gi|254780239|r 19 LCYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQAIEQDYQVEGDLRRTVAMNIKRLMDL 84 (122) Q Consensus 19 Lt~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I~~~~~i~~~L~~~~~~~i~rl~~i 84 (122) |+.|-|||+.++..+... |+..-..+-+.+.+++.++.- ++..+-..+.+..+.+.+| T Consensus 1 L~~IpGIG~~~a~~L~~~-G~~tv~~l~~a~~eeL~~i~G-------i~~~~A~~i~~~ar~~~d~ 58 (60) T d2i1qa1 1 LTDLPGVGPSTAEKLVEA-GYIDFMKIATATVGELTDIEG-------ISEKAAAKMIMGARDLCDL 58 (60) T ss_dssp CTTSTTCCHHHHHHHHHH-TCCSHHHHHTCCHHHHHTSTT-------CCHHHHHHHHHHHHHHTTC T ss_pred CCCCCCCCHHHHHHHHHC-CCCCHHHHHHCCHHHHHHCCC-------CCHHHHHHHHHHHHHHCCC T ss_conf 978889899999999983-699999998599999987789-------8999999999999987189 No 18 >d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Probab=73.35 E-value=1.1 Score=23.02 Aligned_cols=37 Identities=8% Similarity=0.080 Sum_probs=25.3 Q ss_pred EEEEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHH Q ss_conf 664312007176899999998088821200227989999 Q gi|254780239|r 16 VRALCYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVI 54 (122) Q Consensus 16 ~~aLt~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~ 54 (122) .+.|+.|.|||+.+|..+....| .-..+.+.+.+++. T Consensus 9 ~~~L~~I~gIG~~~a~~L~~~f~--s~~~i~~As~eeL~ 45 (68) T d1x2ia1 9 RLIVEGLPHVSATLARRLLKHFG--SVERVFTASVAELM 45 (68) T ss_dssp HHHHTTSTTCCHHHHHHHHHHHC--SHHHHHHCCHHHHT T ss_pred HHHHCCCCCCCHHHHHHHHHHCC--CHHHHHHHHHHHHH T ss_conf 99981899968999999999749--99999885899997 No 19 >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} Probab=72.67 E-value=1.3 Score=22.46 Aligned_cols=32 Identities=13% Similarity=0.301 Sum_probs=28.5 Q ss_pred HHHHHHCCCCHHHHHCCCCHHHHHHHHHHHCC Q ss_conf 99999808882120022798999999986124 Q gi|254780239|r 31 QDICNKLAIPPERRVHQLVESEVIQIRQAIEQ 62 (122) Q Consensus 31 ~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I~~ 62 (122) ..+...+||+|+.+..+||.+|+.+|.+.+++ T Consensus 219 ~~~l~~~~i~~~~R~e~Ls~~~~~~L~~~l~~ 250 (252) T d1qyra_ 219 VEVLTGMGIDPAMRAENISVAQYCQMANYLAE 250 (252) T ss_dssp HHHHHHTTCCTTSBGGGSCHHHHHHHHHHHHH T ss_pred HHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHH T ss_conf 99999779883329434999999999999984 No 20 >d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} Probab=72.58 E-value=0.51 Score=25.03 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=28.2 Q ss_pred CEEEEEEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHH Q ss_conf 576664312007176899999998088821200227989999999 Q gi|254780239|r 13 KRVVRALCYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIR 57 (122) Q Consensus 13 K~i~~aLt~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~ 57 (122) +.++..|..|.|||+++|..|+..++ +..-+.-+.+.++..|. T Consensus 5 r~~F~~Li~V~GIGpK~Al~iLs~~~--~~~l~~aI~~~D~~~L~ 47 (71) T d1bvsa2 5 RDLFLALLSVSGVGPRLAMATLAVHD--AAALRQALADSDVASLT 47 (71) T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHHSC--HHHHHHHTTTTCHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHCC--HHHHHHHHHCCCHHHHH T ss_conf 99999985548817999999998499--99999999817988843 No 21 >d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Probab=70.34 E-value=0.46 Score=25.29 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=29.2 Q ss_pred EEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHH Q ss_conf 431200717689999999808882120022798999999 Q gi|254780239|r 18 ALCYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQI 56 (122) Q Consensus 18 aLt~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l 56 (122) .|..|.|||+.+|..++...| .-..+.+-+.+++.++ T Consensus 3 ~L~~I~gVG~~~a~~L~~~F~--s~~~i~~As~eeL~~v 39 (56) T d1kfta_ 3 SLETIEGVGPKRRQMLLKYMG--GLQGLRNASVEEIAKV 39 (56) T ss_dssp GGGGCTTCSSSHHHHHHHHHS--CHHHHHHCCHHHHTTS T ss_pred CCCCCCCCCHHHHHHHHHHHC--CHHHHHHHHHHHHHHC T ss_conf 753589800999999999939--9999998649999816 No 22 >d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} Probab=70.17 E-value=0.64 Score=24.42 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=20.7 Q ss_pred CEEEEEEEEEECCCHHHHHHHHHHCCC Q ss_conf 576664312007176899999998088 Q gi|254780239|r 13 KRVVRALCYIHGIGFKSSQDICNKLAI 39 (122) Q Consensus 13 K~i~~aLt~I~GIG~~~A~~Ic~~lgI 39 (122) +.++..|..|.|||+++|..|+..+.. T Consensus 6 r~lF~~Li~V~GIGpk~Al~iLs~~~~ 32 (73) T d1ixra1 6 LALFELLLSVSGVGPKVALALLSALPP 32 (73) T ss_dssp HHHHHHHHSSSCCCHHHHHHHHHHSCH T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHCCH T ss_conf 999999865588079999999987368 No 23 >d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus elongatus [TaxId: 146786]} Probab=68.37 E-value=1.9 Score=21.54 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=39.7 Q ss_pred CCCCCEEEEEEEEEECCCHHHHHHHHHHCC---CCHHHHHCCCCHHHHHHHHHHHCC Q ss_conf 899857666431200717689999999808---882120022798999999986124 Q gi|254780239|r 9 IPRAKRVVRALCYIHGIGFKSSQDICNKLA---IPPERRVHQLVESEVIQIRQAIEQ 62 (122) Q Consensus 9 i~~~K~i~~aLt~I~GIG~~~A~~Ic~~lg---Id~~~kv~~Lt~~qi~~l~~~I~~ 62 (122) ++=|.--...|..+.|||+..|..|...-. ++.=..+.-+++.+++.|+++++. T Consensus 19 idlN~As~~eL~~lpGIg~~~A~~Iv~~gpf~s~edL~~V~GIg~~~~e~lk~yl~~ 75 (98) T d2axtu1 19 IDLNNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEH 75 (98) T ss_dssp EESSSSCGGGGTTSTTCTHHHHHHHHHSCCCSSGGGGGGCTTCCTTHHHHHHHHGGG T ss_pred EECCCCCHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHC T ss_conf 636341699998732126999999997188288999963889998999999998724 No 24 >d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} Probab=67.44 E-value=1.7 Score=21.70 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=31.4 Q ss_pred EEEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHH Q ss_conf 312007176899999998088821200227989999999 Q gi|254780239|r 19 LCYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIR 57 (122) Q Consensus 19 Lt~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~ 57 (122) |..|-|||...+..+....| .-..+.+.|.+|+.++. T Consensus 5 L~~iPGIg~~~~~~Ll~~f~--Si~~l~~As~~eL~~v~ 41 (62) T d2a1ja1 5 LLKMPGVNAKNCRSLMHHVK--NIAELAALSQDELTSIL 41 (62) T ss_dssp HHTSTTCCHHHHHHHHHHCS--SHHHHHTCCHHHHHHHH T ss_pred HHCCCCCCHHHHHHHHHHHC--CHHHHHHCCHHHHHHCC T ss_conf 76699999999999999852--49999869999997785 No 25 >d2gqfa2 e.74.1.1 (A:195-342) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Probab=65.47 E-value=1.5 Score=22.03 Aligned_cols=50 Identities=8% Similarity=0.065 Sum_probs=38.0 Q ss_pred CCCCEEEEEEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHCC Q ss_conf 99857666431200717689999999808882120022798999999986124 Q gi|254780239|r 10 PRAKRVVRALCYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQAIEQ 62 (122) Q Consensus 10 ~~~K~i~~aLt~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I~~ 62 (122) .++|.+.-.|..+ +-.+.+..+|...++ ++.++.+|+.+++..|.+.+.+ T Consensus 84 ~~kk~i~~~L~~~--lPkrl~~~ll~~~~~-~~~~~~~lsk~~~~~L~~~Lk~ 133 (148) T d2gqfa2 84 SPKQMLKTILVRL--LPKKLVELWIEQGIV-QDEVIANISKVRVKNLVDFIHH 133 (148) T ss_dssp CTTSBHHHHHTTT--SCHHHHHHHHHTTSS-CCCBGGGCCHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHCCC-CCCHHHHCCHHHHHHHHHHHHC T ss_conf 0125688887998--679999999997575-4320777899999999999858 No 26 >d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} Probab=63.97 E-value=0.91 Score=23.46 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=27.0 Q ss_pred CEEEEEEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHH Q ss_conf 576664312007176899999998088821200227989999999 Q gi|254780239|r 13 KRVVRALCYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIR 57 (122) Q Consensus 13 K~i~~aLt~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~ 57 (122) +.++-.|..|.|||++.|..|+..++ |..-+.-+.++++..|. T Consensus 5 r~~F~~Li~V~GIGpK~Al~iLs~~~--~~~l~~aI~~~D~~~L~ 47 (78) T d1cuka2 5 RTLFKELIKTNGVGPKLALAILSGMS--AQQFVNAVEREEVGALV 47 (78) T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHSC--HHHHHHHHHTTCHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHCC--HHHHHHHHHCCCHHHHH T ss_conf 99999987668801999999998489--99999999806888712 No 27 >d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} Probab=63.32 E-value=4.2 Score=19.37 Aligned_cols=43 Identities=16% Similarity=0.068 Sum_probs=28.9 Q ss_pred EEEEEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHC Q ss_conf 66643120071768999999980888212002279899999998612 Q gi|254780239|r 15 VVRALCYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQAIE 61 (122) Q Consensus 15 i~~aLt~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I~ 61 (122) ..-.|+.+.|||+.+|..|+....=.|.. .-|..+..+.+-+. T Consensus 118 ~~~~L~~lpGIG~kTA~~vl~~~~~~~~~----~vD~hv~Rv~~Rlg 160 (217) T d1pu6a_ 118 TREWLLDQKGIGKESADAILCYACAKEVM----VVDKYSYLFLKKLG 160 (217) T ss_dssp CHHHHHTSTTCCHHHHHHHHHHTTCCSCC----CCCHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEE----ECCHHHHHHHHHHC T ss_conf 99999987636569999999997288054----05748999999958 No 28 >d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} Probab=52.71 E-value=5.9 Score=18.43 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=35.6 Q ss_pred CCCCCCCCEEEEEEEEEECCCHHHHHHHHHHC-------CCCHHHHHCCCCHHHHHHHHHHH Q ss_conf 67589985766643120071768999999980-------88821200227989999999861 Q gi|254780239|r 6 GVNIPRAKRVVRALCYIHGIGFKSSQDICNKL-------AIPPERRVHQLVESEVIQIRQAI 60 (122) Q Consensus 6 g~~i~~~K~i~~aLt~I~GIG~~~A~~Ic~~l-------gId~~~kv~~Lt~~qi~~l~~~I 60 (122) |+||. .--.-.|..+.|||+..|..|...- .++.=.++..+++..++++..+| T Consensus 26 gidiN--~As~~~L~~lpGig~~~A~~Iv~~R~~~G~f~s~edL~~v~gi~~k~~e~i~~~l 85 (90) T d3bzka1 26 GVDVN--TASAALLARISGLNSTLAQNIVAHRDANGAFRTRDELKKVSRLGEKTFEQAAGFL 85 (90) T ss_dssp CEETT--TCCHHHHTTSTTCCHHHHHHHHHHHHHHCSCSSSGGGGGSTTCCHHHHHHHHTTE T ss_pred CEEHH--HCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHCCCE T ss_conf 65141--3989999677898999999999999986997889999507898999999826887 No 29 >d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=50.15 E-value=5.2 Score=18.74 Aligned_cols=39 Identities=21% Similarity=0.372 Sum_probs=24.5 Q ss_pred EEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHH Q ss_conf 2007176899999998088821200227989999999861 Q gi|254780239|r 21 YIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQAI 60 (122) Q Consensus 21 ~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I 60 (122) .|.|||+.+|..+.++.+= .........+.....++++. T Consensus 21 gI~GIGpktAlklikk~~~-~~~~~~~~~~~~~~~~~~~f 59 (120) T d1b43a1 21 GIKGIGLKKALEIVRHSKD-PLAKFQKQSDVDLYAIKEFF 59 (120) T ss_dssp CSTTCCHHHHHHHHHTCSS-GGGGTGGGCSSCHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHCC-HHHHHHHCCCCCHHHHHHHH T ss_conf 6888677999999998379-99998860122628899986 No 30 >d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]} Probab=48.96 E-value=5.7 Score=18.50 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=33.2 Q ss_pred CCEEEEEEEEEECCCHHHHHHHHHHCC---CCHHHHHCCCCHHHHHHHHHHH Q ss_conf 857666431200717689999999808---8821200227989999999861 Q gi|254780239|r 12 AKRVVRALCYIHGIGFKSSQDICNKLA---IPPERRVHQLVESEVIQIRQAI 60 (122) Q Consensus 12 ~K~i~~aLt~I~GIG~~~A~~Ic~~lg---Id~~~kv~~Lt~~qi~~l~~~I 60 (122) |.--..-|..+.|||...|..|...=. ++.-..+..+++..+++|..+| T Consensus 12 NtA~~~eL~~lpgig~~~A~~Iv~~R~f~s~edL~~v~gi~~~~~~~i~~~l 63 (65) T d2duya1 12 NEASLEELMALPGIGPVLARRIVEGRPYARVEDLLKVKGIGPATLERLRPYL 63 (65) T ss_dssp TTCCHHHHTTSTTCCHHHHHHHHHTCCCSSGGGGGGSTTCCHHHHHHHGGGE T ss_pred CCCCHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHC T ss_conf 2288999977789899999999984898999999758898999999999772 No 31 >d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Probab=45.56 E-value=3 Score=20.22 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=25.5 Q ss_pred EEEEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHH Q ss_conf 6643120071768999999980888212002279899999998 Q gi|254780239|r 16 VRALCYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQ 58 (122) Q Consensus 16 ~~aLt~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~ 58 (122) .-.|+.|.|||+.+|..++-..-=.|+.-. + +..+..+-. T Consensus 102 ~~~L~~l~GIG~wTA~~il~~~~~~~d~fp--v-D~~v~R~~~ 141 (190) T d2noha1 102 HKALCILPGVGTQVADCICLMALDKPQAVP--V-DVHMWHIAQ 141 (190) T ss_dssp HHHHTTSTTCCHHHHHHHHHHHSCCTTCCC--C-CHHHHHHHH T ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCCCEEE--E-CHHHHHHHH T ss_conf 999987677518999999999769998675--4-499999999 No 32 >d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} Probab=44.42 E-value=3.2 Score=20.05 Aligned_cols=42 Identities=14% Similarity=0.145 Sum_probs=26.4 Q ss_pred EEEEEEEEEECCCHHHHHHHHH-HCCCCHHH-HHCCCCHHHHHHHHHHHCC Q ss_conf 7666431200717689999999-80888212-0022798999999986124 Q gi|254780239|r 14 RVVRALCYIHGIGFKSSQDICN-KLAIPPER-RVHQLVESEVIQIRQAIEQ 62 (122) Q Consensus 14 ~i~~aLt~I~GIG~~~A~~Ic~-~lgId~~~-kv~~Lt~~qi~~l~~~I~~ 62 (122) .+.-.|+.|.|||+.+|..|+- .+| +++. .++|+ .|++.+.. T Consensus 105 e~~~~L~~l~GIGpwTAd~illf~lg-~~dvfP~~D~------~lr~~~~~ 148 (183) T d1mpga1 105 QAMKTLQTFPGIGRWTANYFALRGWQ-AKDVFLPDDY------LIKQRFPG 148 (183) T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHSC-CSSCCCTTCH------HHHHHSTT T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHCC-CCCCCCCCHH------HHHHHHHH T ss_conf 99999998645349999999986078-9984514069------99987341 No 33 >d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]} Probab=43.63 E-value=4.8 Score=19.00 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=21.4 Q ss_pred EEEEEEEEEECCCHHHHHHHHHHCCCC Q ss_conf 766643120071768999999980888 Q gi|254780239|r 14 RVVRALCYIHGIGFKSSQDICNKLAIP 40 (122) Q Consensus 14 ~i~~aLt~I~GIG~~~A~~Ic~~lgId 40 (122) .+.-.|+.+.|||++.|..+ +++||+ T Consensus 7 ~l~~~i~~lkGvGpk~~~~L-~klgI~ 32 (180) T d1gm5a2 7 DLSTDIQYAKGVGPNRKKKL-KKLGIE 32 (180) T ss_dssp CSCCCSSSSSSCCHHHHHHH-HTTTCC T ss_pred CCCCCHHHCCCCCHHHHHHH-HHHCCC T ss_conf 78997144388689999999-980999 No 34 >d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=43.14 E-value=6.5 Score=18.15 Aligned_cols=42 Identities=21% Similarity=0.189 Sum_probs=31.1 Q ss_pred EEEEEECCCHHHHHHHHHHC-------CCCHHHHHCCCCHHHHHHHHHH Q ss_conf 43120071768999999980-------8882120022798999999986 Q gi|254780239|r 18 ALCYIHGIGFKSSQDICNKL-------AIPPERRVHQLVESEVIQIRQA 59 (122) Q Consensus 18 aLt~I~GIG~~~A~~Ic~~l-------gId~~~kv~~Lt~~qi~~l~~~ 59 (122) -|..+.|||+..|..|...= .++.=.++..+++..+++|.+. T Consensus 34 eL~~lpgig~~~A~~II~yR~~~G~f~sledL~~V~Gi~~k~~eki~k~ 82 (91) T d2edua1 34 DLRSLQRIGPKKAQLIVGWRELHGPFSQVEDLERVEGITGKQMESFLKA 82 (91) T ss_dssp HHHHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGSTTCCHHHHHHHHHH T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHC T ss_conf 9964789899999999999998599788999800889899999999981 No 35 >d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]} Probab=40.00 E-value=6.9 Score=18.00 Aligned_cols=20 Identities=35% Similarity=0.366 Sum_probs=17.2 Q ss_pred EEEECCCHHHHHHHHHHCCC Q ss_conf 12007176899999998088 Q gi|254780239|r 20 CYIHGIGFKSSQDICNKLAI 39 (122) Q Consensus 20 t~I~GIG~~~A~~Ic~~lgI 39 (122) ..|.|||+.+|..++.+.|= T Consensus 19 pgv~gIG~ktA~kli~~~~~ 38 (140) T d1ul1x1 19 ESIRGIGPKRAVDLIQKHKS 38 (140) T ss_dssp CCCTTCCHHHHHHHHHHSSS T ss_pred CCCCCCCHHHHHHHHHHHCC T ss_conf 89998239999999999399 No 36 >d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=38.33 E-value=3.8 Score=19.64 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=22.3 Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCHH Q ss_conf 64312007176899999998088821 Q gi|254780239|r 17 RALCYIHGIGFKSSQDICNKLAIPPE 42 (122) Q Consensus 17 ~aLt~I~GIG~~~A~~Ic~~lgId~~ 42 (122) ..+++|.|||..++.++++.+|+..- T Consensus 300 lpi~ki~GIG~k~~kkL~~~lgi~t~ 325 (389) T d1jiha2 300 FEITSFWTLGGVLGKELIDVLDLPHE 325 (389) T ss_dssp CCGGGSGGGSSHHHHHHHHHTTCCSS T ss_pred CCHHHCCCCCHHHHHHHHHHHCCCCC T ss_conf 87202078788999999998489761 No 37 >d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=38.26 E-value=7.3 Score=17.83 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=16.9 Q ss_pred EEEECCCHHHHHHHHHHCC Q ss_conf 1200717689999999808 Q gi|254780239|r 20 CYIHGIGFKSSQDICNKLA 38 (122) Q Consensus 20 t~I~GIG~~~A~~Ic~~lg 38 (122) ..|.|||+.+|..+..+.| T Consensus 19 pGV~GIG~ktA~kli~~~g 37 (105) T d1rxwa1 19 EGVKGVGVKKALNYIKTYG 37 (105) T ss_dssp CCCTTCCHHHHHHHHHHHS T ss_pred CCCCCCCHHHHHHHHHHHC T ss_conf 8999937899999999939 No 38 >d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} Probab=37.82 E-value=5.1 Score=18.84 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=25.1 Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHH Q ss_conf 64312007176899999998088821200227989999999861 Q gi|254780239|r 17 RALCYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQAI 60 (122) Q Consensus 17 ~aLt~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I 60 (122) -.|.++-|||+.+|..|+..+.=-|.. .-+..+..+-.-+ T Consensus 109 ~~L~~LpGVG~kTA~~il~~a~~~~~~----~vD~~v~Rv~~Rl 148 (224) T d1kg2a_ 109 EEVAALPGVGRSTAGAILSLSLGKHFP----ILDGNVKRVLARC 148 (224) T ss_dssp HHHHTSTTCCHHHHHHHHHHHHCCSCC----CCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCCHHHHHHHHH T ss_conf 999999820144568999876401001----1140199998896 No 39 >d1xo1a1 a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]} Probab=36.26 E-value=8.4 Score=17.46 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=17.3 Q ss_pred EEEEECCCHHHHHHHHHHCC Q ss_conf 31200717689999999808 Q gi|254780239|r 19 LCYIHGIGFKSSQDICNKLA 38 (122) Q Consensus 19 Lt~I~GIG~~~A~~Ic~~lg 38 (122) +..|.|||+.+|..++...| T Consensus 21 ipGV~GiG~KtA~kli~~~g 40 (105) T d1xo1a1 21 IRGVEGIGAKRGYNIIREFG 40 (105) T ss_dssp BCCCTTCCHHHHHHHHHHHC T ss_pred CCCCCCCCHHHHHHHHHHCC T ss_conf 76758847899999998702 No 40 >d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} Probab=36.21 E-value=5.8 Score=18.46 Aligned_cols=39 Identities=10% Similarity=0.183 Sum_probs=24.9 Q ss_pred EEEEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHH Q ss_conf 6643120071768999999980888212002279899999998 Q gi|254780239|r 16 VRALCYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQ 58 (122) Q Consensus 16 ~~aLt~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~ 58 (122) .-.|..+-|||+.+|..|+..+-=.|. -.-+..+..+-. T Consensus 112 ~~~L~~LpGVG~kTA~~il~~~~~~~~----~~vD~~v~Rv~~ 150 (217) T d1keaa_ 112 RKAILDLPGVGKYTCAAVMCLAFGKKA----AMVDANFVRVIN 150 (217) T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCCCC----CCCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCCCCHHHHHH T ss_conf 588998876424666788987458732----000421101222 No 41 >d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} Probab=35.24 E-value=5.9 Score=18.43 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=25.4 Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHH Q ss_conf 64312007176899999998088821200227989999999861 Q gi|254780239|r 17 RALCYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQAI 60 (122) Q Consensus 17 ~aLt~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I 60 (122) -.|.++-|||+.+|..|+..+-=.|. -.-+..+..+-.-+ T Consensus 107 ~~Ll~LpGIG~kTA~~il~~a~~~p~----~~VDt~v~Rv~~Rl 146 (221) T d1rrqa1 107 DEFSRLKGVGPYTVGAVLSLAYGVPE----PAVNGNVMRVLSRL 146 (221) T ss_dssp HHHHTSTTCCHHHHHHHHHHHTCCCC----CCCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC----CCCCCCHHHHHHHH T ss_conf 99998887504788899999855864----35575087777776 No 42 >d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=34.31 E-value=8.1 Score=17.55 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=16.4 Q ss_pred EEECCCHHHHHHHHHHCCC Q ss_conf 2007176899999998088 Q gi|254780239|r 21 YIHGIGFKSSQDICNKLAI 39 (122) Q Consensus 21 ~I~GIG~~~A~~Ic~~lgI 39 (122) .|.|||+.+|..+.++.|- T Consensus 21 GV~GIGpktA~klIk~~g~ 39 (108) T d1a77a1 21 GVKGIGFKRAYELVRSGVA 39 (108) T ss_dssp CSTTCCHHHHHHHHHTTCH T ss_pred CCCCCCHHHHHHHHHHCCC T ss_conf 8999178999999998388 No 43 >d1xbpg1 a.4.7.1 (G:72-143) Ribosomal protein L11, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Probab=32.28 E-value=16 Score=15.71 Aligned_cols=51 Identities=18% Similarity=0.107 Sum_probs=36.6 Q ss_pred HHHHHHHHHHCCCCH------HHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 689999999808882------1200227989999999861245643337889999999 Q gi|254780239|r 27 FKSSQDICNKLAIPP------ERRVHQLVESEVIQIRQAIEQDYQVEGDLRRTVAMNI 78 (122) Q Consensus 27 ~~~A~~Ic~~lgId~------~~kv~~Lt~~qi~~l~~~I~~~~~i~~~L~~~~~~~i 78 (122) |.+|..|.+.+|++. ...++++|-+|+..|-+.-..+ +...||+..++.=+ T Consensus 1 Pp~s~ll~kaagi~kGs~~p~~~~vG~it~~~i~eIAk~K~~d-l~~~~l~~~~k~V~ 57 (72) T d1xbpg1 1 PPMSYLIRKAAGIGKGSSTPNKAKVGKLNWDQVLEIAKTKMPD-LNAGSVEAAANTVA 57 (72) T ss_pred CCHHHHHHHHHCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHH-CCCCCHHHHHHHHH T ss_conf 9889999999786867899998311130899999999999886-38999999999978 No 44 >d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Probab=31.48 E-value=7.7 Score=17.69 Aligned_cols=47 Identities=19% Similarity=0.305 Sum_probs=27.2 Q ss_pred CCCCCCCEEEEEEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHH Q ss_conf 758998576664312007176899999998088821200227989999999861 Q gi|254780239|r 7 VNIPRAKRVVRALCYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQAI 60 (122) Q Consensus 7 ~~i~~~K~i~~aLt~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I 60 (122) -++|.+ .-.|..+-|||+.+|..|+..+-=-| .-.-+..+..+-.-+ T Consensus 103 g~vp~~---~~~L~~LpGVG~kTA~~il~~a~~~~----~~~VDtnv~RV~~Rl 149 (214) T d1orna_ 103 GEVPRD---RDELMKLPGVGRKTANVVVSVAFGVP----AIAVDTHVERVSKRL 149 (214) T ss_dssp TSCCSC---HHHHTTSTTCCHHHHHHHHHHHHCCC----CCCCCHHHHHHHHHH T ss_pred CCCCCC---HHHHHHCCCCCCCHHHHHHHHHHCCC----CCCCCCHHHHHHHHH T ss_conf 978888---99997186866326778999870587----555552388899998 No 45 >d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Probab=30.09 E-value=7.8 Score=17.68 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=18.1 Q ss_pred EEEEEEECCCHHHHHHHHHHCC Q ss_conf 6431200717689999999808 Q gi|254780239|r 17 RALCYIHGIGFKSSQDICNKLA 38 (122) Q Consensus 17 ~aLt~I~GIG~~~A~~Ic~~lg 38 (122) -.|..+-|||+.+|..|+..+- T Consensus 109 ~~L~~LpGVG~~TA~~Il~~a~ 130 (211) T d2abka_ 109 AALEALPGVGRKTANVVLNTAF 130 (211) T ss_dssp HHHHHSTTCCHHHHHHHHHHHH T ss_pred HHHHHHHHHCHHHHHHHHHHHH T ss_conf 9999998605178999999985 No 46 >d1vqoi1 a.4.7.1 (I:71-140) Ribosomal protein L11, C-terminal domain {Archaeon Haloarcula marismortui [TaxId: 2238]} Probab=29.43 E-value=18 Score=15.41 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=37.0 Q ss_pred HHHHHHHHHHCCCC-----H-HHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHH Q ss_conf 68999999980888-----2-12002279899999998612456433378899999 Q gi|254780239|r 27 FKSSQDICNKLAIP-----P-ERRVHQLVESEVIQIRQAIEQDYQVEGDLRRTVAM 76 (122) Q Consensus 27 ~~~A~~Ic~~lgId-----~-~~kv~~Lt~~qi~~l~~~I~~~~~i~~~L~~~~~~ 76 (122) |.+|..|.+.+|++ | ...++++|-+|+..|-+.-. +.+...||...++. T Consensus 3 Pp~s~ll~ka~gi~kGs~~p~~~~vg~it~~~i~eIAk~K~-~dl~~~~l~~~~k~ 57 (70) T d1vqoi1 3 PPTAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKH-PDLLSYDLTNAAKE 57 (70) T ss_dssp CCHHHHHHHHTCCSSCCSSTTTSCCEEECHHHHHHHHHHCT-TTCCCSSHHHHHHH T ss_pred CCHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHHH-HHCCCCCHHHHHHH T ss_conf 97799999997889889999980532458999999999987-74179999999999 No 47 >d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]} Probab=29.25 E-value=18 Score=15.39 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=22.4 Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHH Q ss_conf 64312007176899999998088821200227989999999861 Q gi|254780239|r 17 RALCYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQAI 60 (122) Q Consensus 17 ~aLt~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I 60 (122) ..+..+.|||.+++..+ ..+||. .++||-.-....|...+ T Consensus 178 lpl~~l~GiG~~~~~~L-~~~Gi~---t~gdl~~~~~~~L~~~f 217 (240) T d1jx4a2 178 LDIADVPGIGNITAEKL-KKLGIN---KLVDTLSIEFDKLKGMI 217 (240) T ss_dssp SBGGGSTTCCHHHHHHH-HTTTCC---BGGGGGSSCHHHHHHHH T ss_pred CCHHHCCCCCHHHHHHH-HHHCCC---CHHHHHCCCHHHHHHHH T ss_conf 42534179977899999-993897---69998709999999997 No 48 >d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]} Probab=29.01 E-value=18 Score=15.38 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=10.8 Q ss_pred EEEEECCCHHHHHHHHHHCCCC Q ss_conf 3120071768999999980888 Q gi|254780239|r 19 LCYIHGIGFKSSQDICNKLAIP 40 (122) Q Consensus 19 Lt~I~GIG~~~A~~Ic~~lgId 40 (122) ++.+.|||..++..+ ..+||. T Consensus 210 v~~l~GiG~~~~~~L-~~~GI~ 230 (273) T d1zeta2 210 IKEIPGIGYKTAKCL-EALGIN 230 (273) T ss_dssp GGGSTTCCHHHHHHH-HTTTCC T ss_pred HHHHCCCCHHHHHHH-HHHCCC T ss_conf 677559778999999-990997 No 49 >d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Probab=25.56 E-value=15 Score=15.89 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=9.8 Q ss_pred HHHHHHHHHHHHHHCCCCCCH Q ss_conf 889999999999730310012 Q gi|254780239|r 70 LRRTVAMNIKRLMDLGCYRGL 90 (122) Q Consensus 70 L~~~~~~~i~rl~~i~syrG~ 90 (122) +-+.++.+|...-.+-|-=|+ T Consensus 129 ~a~~ir~~I~~~~gl~~SiGI 149 (209) T d1im4a_ 129 LARKIKQEILEKEKITVTVGV 149 (209) T ss_dssp HHHHHHHHHHHHHCCCEEEEE T ss_pred HHHHHHHHHHHHCCCCEEECC T ss_conf 999999999873487554430 No 50 >d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]} Probab=25.27 E-value=12 Score=16.52 Aligned_cols=20 Identities=20% Similarity=0.077 Sum_probs=13.8 Q ss_pred EEEEEECCCHHHHHHHHHHC Q ss_conf 43120071768999999980 Q gi|254780239|r 18 ALCYIHGIGFKSSQDICNKL 37 (122) Q Consensus 18 aLt~I~GIG~~~A~~Ic~~l 37 (122) .|.++.|||+.+|..++--+ T Consensus 94 ~l~~LpGVG~~tad~~~if~ 113 (144) T d1ngna_ 94 YPIELHGIGKYGNDSYRIFC 113 (144) T ss_dssp SGGGSTTCCHHHHHHHHHHT T ss_pred HHHHCCCCCHHHHHHHHHHH T ss_conf 67866985689999999998 No 51 >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Probab=23.94 E-value=16 Score=15.77 Aligned_cols=57 Identities=12% Similarity=0.196 Sum_probs=40.0 Q ss_pred CCCCCCCEEEEEEEEEECCCHHHHHH-HHHHCCCCHHHHHCCCCH--------HHHHHHHHHHCCCC Q ss_conf 75899857666431200717689999-999808882120022798--------99999998612456 Q gi|254780239|r 7 VNIPRAKRVVRALCYIHGIGFKSSQD-ICNKLAIPPERRVHQLVE--------SEVIQIRQAIEQDY 64 (122) Q Consensus 7 ~~i~~~K~i~~aLt~I~GIG~~~A~~-Ic~~lgId~~~kv~~Lt~--------~qi~~l~~~I~~~~ 64 (122) -++|.++|..++|....|.|.++..+ +++.+ .....++.-++- +|+....+.+.-++ T Consensus 4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~-~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~ 69 (213) T d1vmaa2 4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF-VDEGKSVVLAAADTFRAAAIEQLKIWGERVGATV 69 (213) T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH-HHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCC T ss_conf 76799999899998999998899999999999-9779906999601334204678887764327641 No 52 >d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]} Probab=20.55 E-value=27 Score=14.37 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=21.8 Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHH Q ss_conf 6431200717689999999808882120022798999999 Q gi|254780239|r 17 RALCYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQI 56 (122) Q Consensus 17 ~aLt~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l 56 (122) +||- |.|||..+|..++...+ ....+.+.+.+++.+| T Consensus 108 ~aLG-I~~vG~~~Ak~La~~f~--sl~~l~~as~eeL~~I 144 (181) T d1dgsa1 108 YALG-LPGVGEVLARNLARRFG--TMDRLLEASLEELIEV 144 (181) T ss_dssp HHTT-CSSCCHHHHHHHHHTTS--BHHHHTTCCHHHHHTS T ss_pred HHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHC T ss_conf 9987-54344778999998762--0025541278988610 No 53 >d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus radiodurans [TaxId: 1299]} Probab=20.25 E-value=18 Score=15.46 Aligned_cols=74 Identities=27% Similarity=0.377 Sum_probs=45.3 Q ss_pred EEEEEEEEECCCHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHCC----C---------------------CCCCHH Q ss_conf 666431200717689999999808882120022798999999986124----5---------------------643337 Q gi|254780239|r 15 VVRALCYIHGIGFKSSQDICNKLAIPPERRVHQLVESEVIQIRQAIEQ----D---------------------YQVEGD 69 (122) Q Consensus 15 i~~aLt~I~GIG~~~A~~Ic~~lgId~~~kv~~Lt~~qi~~l~~~I~~----~---------------------~~i~~~ 69 (122) +.-+|+++=|||+++|..+...+=-.+...+.+|.+.=. .+.+-|.. . ..+|+ T Consensus 10 LI~~l~kLPGIG~KsA~Rla~~LL~~~~~~~~~l~~~l~-~~~~~I~~C~~C~~l~e~~~C~iC~d~~Rd~~~iCVVE~- 87 (199) T d1vdda_ 10 LIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLASALL-EAKRDLHVCPICFNITDAEKCDVCADPSRDQRTICVVEE- 87 (199) T ss_dssp HHHHHHTSTTCCHHHHHHHHHHHSSSCHHHHHHHHHHHH-HHHHHCEECSSSCCEESSSSCHHHHCSSSCTTEEEEESS- T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC- T ss_conf 999998789988999999999998399889999999999-999860989887704267774411476777646999966- Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHCC Q ss_conf 88999999999973031001233179 Q gi|254780239|r 70 LRRTVAMNIKRLMDLGCYRGLRHRRG 95 (122) Q Consensus 70 L~~~~~~~i~rl~~i~syrG~RH~~g 95 (122) ..|+.-+=+.+.|+|+=|..| T Consensus 88 -----~~Dl~~iE~t~~y~G~YhVL~ 108 (199) T d1vdda_ 88 -----PGDVIALERSGEYRGLYHVLH 108 (199) T ss_dssp -----HHHHHHTTTTSSCCSEEEECS T ss_pred -----HHHHHHHHHCCCCHHHHHHHC T ss_conf -----899899985231000155415 Done!