HHsearch alignment for GI: 254780240 and conserved domain: COG1222

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].

Probab=96.84  E-value=0.002  Score=42.15  Aligned_cols=43  Identities=19%  Similarity=0.465  Sum_probs=34.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCC--CEECHHHHHHHHHHHHHHH
Q ss_conf             999878899967899999997189--4895789999999600145
Q gi|254780240|r    3 IIFLGPPGSGKGTQACRLSQKLNV--PQLSTGDMLRAEVDRNTLL   45 (201)
Q Consensus         3 I~i~G~PGsGK~T~a~~la~~~~~--~~is~gdllR~~~~~~s~~   45 (201)
T Consensus       188 VLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRl  232 (406)
T COG1222         188 VLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARL  232 (406)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCHHH
T ss_conf             276689997588999998720586699942199999983411699