HHsearch alignment for GI: 254780240 and conserved domain: PRK05703
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.74 E-value=3.5e-05 Score=53.24 Aligned_cols=104 Identities=21% Similarity=0.305 Sum_probs=56.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE-------ECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH--HHHHHHC
Q ss_conf 99987889996789999999718948-------95789999999600145666677641344554103566--5554202
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQ-------LSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQ--VVCDRIR 73 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~-------is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~--li~~~l~ 73 (201)
T Consensus 213 valVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~-DtyRigA------~eQLk~Ya~i-lgvp~~v~~~~~~l~~al~ 284 (412)
T PRK05703 213 VALVGPTGVGKTTTLAKLAARYALEEGKDKVALITL-DTYRIGA------VEQLKTYAKI-MGIPVKVAYDPKELAKALE 284 (412)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE-CCCCHHH------HHHHHHHHHH-CCCEEEEECCHHHHHHHHH
T ss_conf 999888887567699999999999729981799983-7677779------9999999997-1973798479999999998
Q ss_pred CCCCCCEEEEC--CC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 32225317863--80-11124578887666531252221035554
Q gi|254780240|r 74 LPDCDSGFILD--GY-PRTVDQAKSLHAFISNMDCAIDAVIELRV 115 (201)
Q Consensus 74 ~~~~~~g~ilD--GF-PRt~~Qa~~l~~~l~~~~~~~~~vi~L~~ 115 (201)
T Consensus 285 ~~~~~dlILIDTaG~s~~d~~~~~eL~~~~~~~~-~~~~~LVlsa 328 (412)
T PRK05703 285 QLANCDLILIDTAGRSQRDPRLISELKALIENSK-PIDVYLVLSA 328 (412)
T ss_pred HHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCC-CCCEEEEECC
T ss_conf 7158997999689889789999999999986248-8718999759