HHsearch alignment for GI: 254780240 and conserved domain: PRK05703

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.74  E-value=3.5e-05  Score=53.24  Aligned_cols=104  Identities=21%  Similarity=0.305  Sum_probs=56.1

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCE-------ECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH--HHHHHHC
Q ss_conf             99987889996789999999718948-------95789999999600145666677641344554103566--5554202
Q gi|254780240|r    3 IIFLGPPGSGKGTQACRLSQKLNVPQ-------LSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQ--VVCDRIR   73 (201)
Q Consensus         3 I~i~G~PGsGK~T~a~~la~~~~~~~-------is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~--li~~~l~   73 (201)
T Consensus       213 valVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~-DtyRigA------~eQLk~Ya~i-lgvp~~v~~~~~~l~~al~  284 (412)
T PRK05703        213 VALVGPTGVGKTTTLAKLAARYALEEGKDKVALITL-DTYRIGA------VEQLKTYAKI-MGIPVKVAYDPKELAKALE  284 (412)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE-CCCCHHH------HHHHHHHHHH-CCCEEEEECCHHHHHHHHH
T ss_conf             999888887567699999999999729981799983-7677779------9999999997-1973798479999999998


Q ss_pred             CCCCCCEEEEC--CC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             32225317863--80-11124578887666531252221035554
Q gi|254780240|r   74 LPDCDSGFILD--GY-PRTVDQAKSLHAFISNMDCAIDAVIELRV  115 (201)
Q Consensus        74 ~~~~~~g~ilD--GF-PRt~~Qa~~l~~~l~~~~~~~~~vi~L~~  115 (201)
T Consensus       285 ~~~~~dlILIDTaG~s~~d~~~~~eL~~~~~~~~-~~~~~LVlsa  328 (412)
T PRK05703        285 QLANCDLILIDTAGRSQRDPRLISELKALIENSK-PIDVYLVLSA  328 (412)
T ss_pred             HHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCC-CCCEEEEECC
T ss_conf             7158997999689889789999999999986248-8718999759