HHsearch alignment for GI: 254780240 and conserved domain: PRK06995
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=96.19 E-value=0.0027 Score=41.38 Aligned_cols=104 Identities=15% Similarity=0.185 Sum_probs=50.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE-------ECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH--HHHHHHC
Q ss_conf 99987889996789999999718948-------95789999999600145666677641344554103566--5554202
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNVPQ-------LSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQ--VVCDRIR 73 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~~~-------is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~--li~~~l~ 73 (201)
T Consensus 179 ~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT-~DTYRIgA------vEQLktYa~-IlgvPv~vv~~~~eL~~aL~ 250 (404)
T PRK06995 179 FALVGPTGVGKTTTTAKLAARCVMRHGASKVALLT-TDSYRIGG------HEQLRIYGK-ILGVPVHAVKDAADLRLALA 250 (404)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE-CCCCCHHH------HHHHHHHHH-HCCCEEEEECCHHHHHHHHH
T ss_conf 89866888763758999999999983898379997-68754789------999999998-75955999599999999999
Q ss_pred CCCCCCEEEEC--CC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 32225317863--80-11124578887666531252221035554
Q gi|254780240|r 74 LPDCDSGFILD--GY-PRTVDQAKSLHAFISNMDCAIDAVIELRV 115 (201)
Q Consensus 74 ~~~~~~g~ilD--GF-PRt~~Qa~~l~~~l~~~~~~~~~vi~L~~ 115 (201)
T Consensus 251 ~l~~~dlILIDTaGrs~rD~~~~e~l~~l-~~~~~~~~~~LVLsa 294 (404)
T PRK06995 251 ELRNKHIVLIDTVGMSQRDRMVSEQIAML-HGAGAPVQRLLLLNA 294 (404)
T ss_pred HHCCCCEEEEECCCCCCCCHHHHHHHHHH-HHCCCCCEEEEEECC
T ss_conf 70899999980999897688899999999-735788528999779