HHsearch alignment for GI: 254780240 and conserved domain: PRK08533
>PRK08533 flagellar accessory protein FlaH; Reviewed.
Probab=97.02 E-value=0.0011 Score=43.84 Aligned_cols=126 Identities=18% Similarity=0.235 Sum_probs=69.2
Q ss_pred EEEECCCCCCHHHHHHHHHHH-----HCCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--C------CH-HHHHHH
Q ss_conf 999878899967899999997-----189489578999999960014566667764134455--4------10-356655
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQK-----LNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLI--S------DA-IVNQVV 68 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~-----~~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lv--p------d~-ii~~li 68 (201)
T Consensus 27 ~li~G~~GtGKsi~~~~~~~~~l~~g~~~~yis~e~t~~~~i~qm~s~g~di~~~~~~G~l~~i~~~~~~~~~~~~~~~L 106 (230)
T PRK08533 27 ILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSSQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEKRDFL 106 (230)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCCHHHHHCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 99986899878999999999998789869999943899999999998699817997579679996134335404578999
Q ss_pred HHHHCCC--CCCCEEEECCC-H---H--HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 5420232--22531786380-1---1--12457888766653125222103555422125664233112
Q gi|254780240|r 69 CDRIRLP--DCDSGFILDGY-P---R--TVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVL 129 (201)
Q Consensus 69 ~~~l~~~--~~~~g~ilDGF-P---R--t~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~ 129 (201)
T Consensus 107 ~~ll~~~~~~~~dvIIIDSlS~l~~~~~~~~~~~~~~~~lk~l-~s~gktIilTv~p~~~~e~~l~~lr 174 (230)
T PRK08533 107 DKLMNTRRFYEKDVVIIDSLSSLVSRDASEVQIRDLMAFFKRI-SSLNKVIILTANPKELPESVLLILR 174 (230)
T ss_pred HHHHHHHHHCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHHHH-HHCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 9997326643798999905318851677789999999999999-8589889999563313624544204