HHsearch alignment for GI: 254780240 and conserved domain: PRK09302
>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=97.13 E-value=0.00084 Score=44.58 Aligned_cols=84 Identities=14% Similarity=0.202 Sum_probs=42.5
Q ss_pred EEEECCCCCCHHHHHHHHH----HHHCCC--EECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH-------------
Q ss_conf 9998788999678999999----971894--895789999999600145666677641344554103-------------
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLS----QKLNVP--QLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAI------------- 63 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la----~~~~~~--~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~i------------- 63 (201)
T Consensus 27 ~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyitl~E~~~~l~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~~~~~~~~~ 106 (501)
T PRK09302 27 TLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSEQEEAGEY 106 (501)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCCCCCCC
T ss_conf 99983899999999999999998855997899985799999999999849986897326838999615674311133447
Q ss_pred ----HHHHHHHHHCCCCCCCEEEECCCH
Q ss_conf ----566555420232225317863801
Q gi|254780240|r 64 ----VNQVVCDRIRLPDCDSGFILDGYP 87 (201)
Q Consensus 64 ----i~~li~~~l~~~~~~~g~ilDGFP 87 (201)
T Consensus 107 dL~~l~~~I~~~v~~~~-~~RvViDSlt 133 (501)
T PRK09302 107 DLSALIERIEYAIRKIK-AKRVVIDSIE 133 (501)
T ss_pred CHHHHHHHHHHHHHHHC-CCEEEECCHH
T ss_conf 68999999999999719-9999999978