HHsearch alignment for GI: 254780240 and conserved domain: PRK12726
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional.
Probab=95.29 E-value=0.035 Score=34.43 Aligned_cols=86 Identities=17% Similarity=0.238 Sum_probs=46.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC----CEECHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 999878899967899999997189----4895789999999600-14566667764134455410356655542023222
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLNV----PQLSTGDMLRAEVDRN-TLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDC 77 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~~----~~is~gdllR~~~~~~-s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~ 77 (201)
T Consensus 209 IaLVGvnGvGKTTTiAKLA~~l~~~gkkV~LVAaDTFRaAAiEQLk~~g~rlgVpV~~~~d-pa~l~~av--~~~a~~~~ 285 (407)
T PRK12726 209 ISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATS-PAELEEAV--QYMTYVNC 285 (407)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECC-HHHHHHHH--HHHHHCCC
T ss_conf 9998999897899999999999977991799970667788999999999997964998188-89999999--99986289
Q ss_pred CCEEEECCCHHHHH
Q ss_conf 53178638011124
Q gi|254780240|r 78 DSGFILDGYPRTVD 91 (201)
Q Consensus 78 ~~g~ilDGFPRt~~ 91 (201)
T Consensus 286 ~DvVIIDTAGRl~~ 299 (407)
T PRK12726 286 VDHILIDTVGRNYL 299 (407)
T ss_pred CCEEEEECCCCCCC
T ss_conf 99899969998813