HHsearch alignment for GI: 254780240 and conserved domain: TIGR01842
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=95.13 E-value=0.015 Score=36.76 Aligned_cols=33 Identities=33% Similarity=0.474 Sum_probs=24.9
Q ss_pred EEEECCCCCCHHHHHHHHH----HHHCCCEECHHHHH
Q ss_conf 9998788999678999999----97189489578999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLS----QKLNVPQLSTGDML 35 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la----~~~~~~~is~gdll 35 (201)
T Consensus 359 laIIGPSgSGKStLaR~~vG~W~~~~G~VRLDGadl~ 395 (556)
T TIGR01842 359 LAIIGPSGSGKSTLARILVGIWPPASGSVRLDGADLK 395 (556)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEHHHHH
T ss_conf 8887478652588987887210135653364033440