HHsearch alignment for GI: 254780240 and conserved domain: TIGR02237
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.03 E-value=0.0043 Score=40.11 Aligned_cols=126 Identities=21% Similarity=0.270 Sum_probs=65.3
Q ss_pred EECCCCCCHHHHHHHHHH----HHC-CCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 987889996789999999----718-948957899999996001456666776413445541035665554202322253
Q gi|254780240|r 5 FLGPPGSGKGTQACRLSQ----KLN-VPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCDS 79 (201)
Q Consensus 5 i~G~PGsGK~T~a~~la~----~~~-~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii~~li~~~l~~~~~~~ 79 (201)
T Consensus 17 iYGp~G~GKTn~c~~~a~~a~~~Gk~v~YiDT---------EGGLS~ER~~q~~~~~~~D~e~~~~~------------- 74 (223)
T TIGR02237 17 IYGPPGSGKTNICLILAVNAARQGKKVVYIDT---------EGGLSPERFKQIAEDRALDPERVLSN------------- 74 (223)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC---------CCCCHHHHHHHHHHCCCCCHHHHHCC-------------
T ss_conf 87589986789999999999861895899962---------89832899999863058898888415-------------
Q ss_pred EEEECCCHHHHHHHHHHHHH---HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 17863801112457888766---653125222103555422125664233112323334556567898999999999999
Q gi|254780240|r 80 GFILDGYPRTVDQAKSLHAF---ISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRK 156 (201)
Q Consensus 80 g~ilDGFPRt~~Qa~~l~~~---l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~ 156 (201)
T Consensus 75 ~iv~~~~-~f~eQ~~ai~~~~~~~~~~G~~~~Lv-V--vDs~t~~YRle-------------~~~d~n-k~~~~~~~l~~ 136 (223)
T TIGR02237 75 VIVFEVF-DFDEQEVAIQKTSKLIDRDGDKADLV-V--VDSFTALYRLE-------------RSDDRN-KQISLNRELAR 136 (223)
T ss_pred EEEECCC-CHHHHHHHHHHHHHHHHCCCCEEEEE-E--EECCHHHHHHC-------------CCCCCH-HHHHHHHHHHH
T ss_conf 3552353-56789999999999986068833148-8--81533454202-------------578602-56799999999
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 75699999996797
Q gi|254780240|r 157 TILPLSSYYRDMGC 170 (201)
Q Consensus 157 ~~~pv~~~y~~~~~ 170 (201)
T Consensus 137 Ql~~Ll~lArk~~~ 150 (223)
T TIGR02237 137 QLTLLLSLARKKDL 150 (223)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999876499