HHsearch alignment for GI: 254780240 and conserved domain: TIGR02880
>TIGR02880 cbbX_cfxQ CbbX protein; InterPro: IPR000470 Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. The Cfx genes in Alcaligenes eutrophus encode a number of Calvin cycle enzymes . The observed sizes of two of the gene products, CfxX and CfxY, are 35 kDa and 27 kDa respectively . No functions could be assigned to CfxX and CfxY. These proteins show a high degree of similarity to the Bacillus subtilis stage V sporulation protein K . ; GO: 0005524 ATP binding.
Probab=94.25 E-value=0.2 Score=29.63 Aligned_cols=110 Identities=25% Similarity=0.365 Sum_probs=56.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHH-CCCEECHH--------HHHHHHHHHHHHHHHHHHHHHHC---CCCC---------
Q ss_conf 969998788999678999999971-89489578--------99999996001456666776413---4455---------
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKL-NVPQLSTG--------DMLRAEVDRNTLLGKQVKGSMES---GSLI--------- 59 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~-~~~~is~g--------dllR~~~~~~s~~g~~i~~~l~~---G~lv--------- 59 (201)
T Consensus 59 lhm~ftG~PGtGkttva~~m~~~l~~lGy~r~G~~~~~trddlvGqy~Ght---aPktke~lk~a~GGvlfideayyly~ 135 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHT---APKTKEVLKRAMGGVLFIDEAYYLYR 135 (284)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHCCC---CCHHHHHHHHHCCCEEEEECHHHHCC
T ss_conf 267751689872489999999999871540036267853001311221257---72268999874287366422033217
Q ss_pred CC------HHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 41------035665554202322253178638011124578887666531252221035554221
Q gi|254780240|r 60 SD------AIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDA 118 (201)
Q Consensus 60 pd------~ii~~li~~~l~~~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~ 118 (201)
T Consensus 136 P~nerdyG~eaieillq~men~r~~lvvi~aGy~~rm~---~f~--~snPG~~sr~a~h~~fPdy 195 (284)
T TIGR02880 136 PDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMD---SFF--ESNPGLSSRVAHHVDFPDY 195 (284)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH---HHH--HCCCCHHHHHHHHCCCCCC
T ss_conf 76410223799999999872365537888717078888---875--1178624677643158887