HHsearch alignment for GI: 254780240 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.35 E-value=0.033 Score=34.54 Aligned_cols=33 Identities=18% Similarity=0.249 Sum_probs=25.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC-----CCEECHHHHH
Q ss_conf 99987889996789999999718-----9489578999
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKLN-----VPQLSTGDML 35 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~~-----~~~is~gdll 35 (201)
T Consensus 41 l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~~~~~~ 78 (226)
T TIGR03420 41 LYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECHHHHH
T ss_conf 99989999988999999999986269957995299987