HHsearch alignment for GI: 254780240 and conserved domain: cd00227
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.84 E-value=0.00014 Score=49.50 Aligned_cols=161 Identities=16% Similarity=0.101 Sum_probs=82.9
Q ss_pred EEEEE-CCCCCCHHHHHHHHHHHHCCC--EECHHHHHHHHHHHH---HHHHHHHHHHHHCCCCCCCHH---HHHHHHHHH
Q ss_conf 69998-788999678999999971894--895789999999600---145666677641344554103---566555420
Q gi|254780240|r 2 RIIFL-GPPGSGKGTQACRLSQKLNVP--QLSTGDMLRAEVDRN---TLLGKQVKGSMESGSLISDAI---VNQVVCDRI 72 (201)
Q Consensus 2 ~I~i~-G~PGsGK~T~a~~la~~~~~~--~is~gdllR~~~~~~---s~~g~~i~~~l~~G~lvpd~i---i~~li~~~l 72 (201)
T Consensus 3 ~II~LNG~SSSGKSsiAraLQ~~l~~p~~h~~v-D~f~~~~p~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~i 78 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGV-DSFIEALPLKCQDAEGGIEFD---GDGGVSPGPEFRLLEGAWYEAV 78 (175)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEH-HHHHHHCCCCCCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHH
T ss_conf 499986899898899999999847675688418-589886763136875422348---7766354156999999999999
Q ss_pred CC-CCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 23-22253178638011124578887666531252221035554221256642331123233345565678989999999
Q gi|254780240|r 73 RL-PDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRI 151 (201)
Q Consensus 73 ~~-~~~~~g~ilDGFPRt~~Qa~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~DD~~e~i~~Rl 151 (201)
T Consensus 79 aa~a~aG~nvIvD~v~~~~~~l~d~~~~L~g--~-~v~~VGV~C~l~~l~~RE~~RgDR~~G------------~A~~-- 141 (175)
T cd00227 79 AAMARAGANVIADDVFLGRAALQDCWRSFVG--L-DVLWVGVRCPGEVAEGRETARGDRVPG------------QARK-- 141 (175)
T ss_pred HHHHHCCCCEEEEEEECCCHHHHHHHHHHCC--C-CEEEEEEECCHHHHHHHHHHCCCCCCC------------HHHH--
T ss_conf 9999779988986312380889999998579--9-279999878999999998745899964------------6788--
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCC-CHHHHHHHHHHHH
Q ss_conf 999997569999999679799993899-8899999999999
Q gi|254780240|r 152 ENYRKTILPLSSYYRDMGCLYIIDGML-DMDEVSRSIDSLL 191 (201)
Q Consensus 152 ~~y~~~~~pv~~~y~~~~~l~~Idg~~-~~~eV~~~I~~~l 191 (201)
T Consensus 142 -q~~~----VH---~~~~YDleVDTs~~sp~eCA~~I~~~l 174 (175)
T cd00227 142 -QARV----VH---AGVEYDLEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred -HHHH----HH---CCCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf -9998----43---599885687799999999999999971