HHsearch alignment for GI: 254780240 and conserved domain: cd01123
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.02 E-value=0.11 Score=31.40 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=16.5
Q ss_pred EECCCCCCHHHHHHHHHHH
Q ss_conf 9878899967899999997
Q gi|254780240|r 5 FLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 5 i~G~PGsGK~T~a~~la~~ 23 (201)
T Consensus 24 i~G~~GsGKTql~lqla~~ 42 (235)
T cd01123 24 IFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred EECCCCCCHHHHHHHHHHH
T ss_conf 9999998499999999999