HHsearch alignment for GI: 254780240 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.93 E-value=0.0072 Score=38.70 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 9699987889996789999999718
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKLN 25 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~~ 25 (201)
T Consensus 26 ~nIlIsG~tGSGKTTll~al~~~i~ 50 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9899989999989999999996133