HHsearch alignment for GI: 254780240 and conserved domain: cd01672
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.49 E-value=1.8e-12 Score=98.95 Aligned_cols=172 Identities=18% Similarity=0.215 Sum_probs=93.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHH---CCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCHHHHHH--------
Q ss_conf 969998788999678999999971---8948957899999996001456666776413445--541035665--------
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQKL---NVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSL--ISDAIVNQV-------- 67 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~~---~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~l--vpd~ii~~l-------- 67 (201)
T Consensus 1 m~IviEG~dGsGKsT~~~~L~~~L~~~g~~v~~~~e------P~~~~~~~~ir~~l~~~~~~~~~~~~~~lL~~a~R~~~ 74 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE------PGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH 74 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC------CCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 989998998999999999999999977993899869------99984678999987333545689999999999999999
Q ss_pred HHHHHCCC-CCCCEEEECCCHHH-HH-HH----------HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 55420232-22531786380111-24-57----------88876665312522210355542212566423311232333
Q gi|254780240|r 68 VCDRIRLP-DCDSGFILDGYPRT-VD-QA----------KSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIAS 134 (201)
Q Consensus 68 i~~~l~~~-~~~~g~ilDGFPRt-~~-Qa----------~~l~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~ 134 (201)
T Consensus 75 ~~~~i~~~l~~~~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~-~~~~~~PDl~i~Ld~~pe~~~~Ri~~R~~~~--- 150 (200)
T cd01672 75 VEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDL-ATGGLKPDLTILLDIDPEVGLARIEARGRDD--- 150 (200)
T ss_pred HHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHH-HHCCCCCCEEEEEECCHHHHHHHHHHCCCCC---
T ss_conf 999999888459989984551128888774069999999999987-7469999989998179999999998468987---
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 455656789899999999999975699999996-7979999389988999999999999
Q gi|254780240|r 135 EKSVRSDDKYDVFLKRIENYRKTILPLSSYYRD-MGCLYIIDGMLDMDEVSRSIDSLLV 192 (201)
Q Consensus 135 ~~~~R~DD~~e~i~~Rl~~y~~~~~pv~~~y~~-~~~l~~Idg~~~~~eV~~~I~~~l~ 192 (201)
T Consensus 151 ---~~e~~~~~~~~kv~~~Y~~-------~~~~~~~~~~vIDa~~~~eev~~~I~~~i~ 199 (200)
T cd01672 151 ---RDEQEGLEFHERVREGYLE-------LAAQEPERIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred ---HHHHCCHHHHHHHHHHHHH-------HHHHCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf ---2765159999999999999-------997588978998699999999999999971