HHsearch alignment for GI: 254780240 and conserved domain: cd01863
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=93.77 E-value=0.068 Score=32.62 Aligned_cols=23 Identities=26% Similarity=0.667 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 96999878899967899999997
Q gi|254780240|r 1 MRIIFLGPPGSGKGTQACRLSQK 23 (201)
Q Consensus 1 m~I~i~G~PGsGK~T~a~~la~~ 23 (201)
T Consensus 1 ~KivvvG~~~vGKTsli~r~~~~ 23 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDD 23 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC
T ss_conf 98999997995799999999639