>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

Probab=94.17  E-value=0.044  Score=33.77  Aligned_cols=20  Identities=40%  Similarity=0.562  Sum_probs=17.7

Q ss_pred             EEEECCCCCCHHHHHHHHHH
Q ss_conf             99987889996789999999
Q gi|254780240|r    3 IIFLGPPGSGKGTQACRLSQ   22 (201)
Q Consensus         3 I~i~G~PGsGK~T~a~~la~   22 (201)
T Consensus        28 v~ilGpNGaGKSTllk~i~G   47 (177)
T cd03222          28 IGIVGPNGTGKTTAVKILAG   47 (177)
T ss_pred             EEEECCCCCCHHHHHHHHHC
T ss_conf             99989999999999999968