HHsearch alignment for GI: 254780240 and conserved domain: cd03293
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.28 E-value=0.035 Score=34.40 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9998788999678999999971
Q gi|254780240|r 3 IIFLGPPGSGKGTQACRLSQKL 24 (201)
Q Consensus 3 I~i~G~PGsGK~T~a~~la~~~ 24 (201)
T Consensus 33 ~~iiGpsGsGKSTLl~~i~Gl~ 54 (220)
T cd03293 33 VALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999957999999997599