HHsearch alignment for GI: 254780240 and conserved domain: pfam00448

>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.

Probab=96.42  E-value=0.0031  Score=41.00  Aligned_cols=93  Identities=24%  Similarity=0.319  Sum_probs=44.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCE----ECHHHHHHHHHHHHHHHHHHHHHHHHC-CCCC----CCHHHHHHHHHHHC
Q ss_conf             99987889996789999999718948----957899999996001456666776413-4455----41035665554202
Q gi|254780240|r    3 IIFLGPPGSGKGTQACRLSQKLNVPQ----LSTGDMLRAEVDRNTLLGKQVKGSMES-GSLI----SDAIVNQVVCDRIR   73 (201)
Q Consensus         3 I~i~G~PGsGK~T~a~~la~~~~~~~----is~gdllR~~~~~~s~~g~~i~~~l~~-G~lv----pd~ii~~li~~~l~   73 (201)
T Consensus         4 i~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~------eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~   77 (196)
T pfam00448         4 ILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAI------EQLKQLAERLGVPVFGSGTGSDPAAVAFDAVE   77 (196)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH------HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH
T ss_conf             999899999889999999999997799289997587768899------99999998639817814877787899999999


Q ss_pred             CC--CCCCEEEEC--C-CHHHHHHHHHHHHHHH
Q ss_conf             32--225317863--8-0111245788876665
Q gi|254780240|r   74 LP--DCDSGFILD--G-YPRTVDQAKSLHAFIS  101 (201)
Q Consensus        74 ~~--~~~~g~ilD--G-FPRt~~Qa~~l~~~l~  101 (201)
T Consensus        78 ~~~~~~~D~IlIDTaGr~~~d~~~~~el~~~~~  110 (196)
T pfam00448        78 KAKAENYDVVLVDTAGRLQNDKNLMDELKKIKR  110 (196)
T ss_pred             HHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf             988468999999899987476778999999985