HHsearch alignment for GI: 254780240 and conserved domain: pfam02223
>pfam02223 Thymidylate_kin Thymidylate kinase.
Probab=99.43 E-value=1.5e-12 Score=99.32 Aligned_cols=163 Identities=24% Similarity=0.263 Sum_probs=88.9
Q ss_pred EECCCCCCHHHHHHHHHHHH---CCCEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH-HHHHHHH-------HC
Q ss_conf 98788999678999999971---8948957899999996001456666776413445541035-6655542-------02
Q gi|254780240|r 5 FLGPPGSGKGTQACRLSQKL---NVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIV-NQVVCDR-------IR 73 (201)
Q Consensus 5 i~G~PGsGK~T~a~~la~~~---~~~~is~gdllR~~~~~~s~~g~~i~~~l~~G~lvpd~ii-~~li~~~-------l~ 73 (201)
T Consensus 1 ~EGiDGsGKsTq~~~L~~~L~~~g~~v~~~----~e--p~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~~i~ 74 (186)
T pfam02223 1 IEGLDGAGKTTQAELLKERLKEQGIKVVLT----RE--PGGTPIGEKIRELLLRNEELSPLTEALLFAADRIEHLEEKIK 74 (186)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCEEEEE----EC--CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 979999899999999999999879908997----49--999837999999985012589999999999999999999999
Q ss_pred CC-CCCCEEEECCCHH-HHH-HHH------HHHHHHH--HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-
Q ss_conf 32-2253178638011-124-578------8876665--3125222103555422125664233112323334556567-
Q gi|254780240|r 74 LP-DCDSGFILDGYPR-TVD-QAK------SLHAFIS--NMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSD- 141 (201)
Q Consensus 74 ~~-~~~~g~ilDGFPR-t~~-Qa~------~l~~~l~--~~~~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~~~R~D- 141 (201)
T Consensus 75 ~~l~~g~~VI~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~PDlti~Ldv~pe~~~~Ri~~R~~~-------~~~e~ 147 (186)
T pfam02223 75 PALKQGKTVICDRYLFSSIAYQGAAGGLGLDLVLSLNPDVPGPKPDLTFLLDVDPEVALKRLRRRGEL-------DEFEF 147 (186)
T ss_pred HHHHCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHCCCC-------CHHHH
T ss_conf 99976998996073134899876204778999999987206789998999838999999999866875-------62765
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH
Q ss_conf 8989999999999997569999999679799993899889999999
Q gi|254780240|r 142 DKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSI 187 (201)
Q Consensus 142 D~~e~i~~Rl~~y~~~~~pv~~~y~~~~~l~~Idg~~~~~eV~~~I 187 (201)
T Consensus 148 e~~~~~~kv~~~Y~-------~l~~~~~~~~~IDa~~~i~ev~~~I 186 (186)
T pfam02223 148 EQLDFLRKVRERYL-------ELAKDDERILIIDASNSIEEVHEEI 186 (186)
T ss_pred CCHHHHHHHHHHHH-------HHHCCCCCEEEEECCCCHHHHHHHC
T ss_conf 17999999999999-------9976999789987999999997049