RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780240|ref|YP_003064653.1| adenylate kinase [Candidatus
Liberibacter asiaticus str. psy62]
(201 letters)
>gnl|CDD|30189 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible
phosphoryl transfer from adenosine triphosphates (ATP)
to adenosine monophosphates (AMP) and to yield adenosine
diphosphates (ADP). This enzyme is required for the
biosynthesis of ADP and is essential for homeostasis of
adenosine phosphates..
Length = 194
Score = 186 bits (473), Expect = 4e-48
Identities = 86/195 (44%), Positives = 117/195 (60%), Gaps = 14/195 (7%)
Query: 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISD 61
RI+ LGPPGSGKGTQA RL++K +P +STGD+LR E+ T LGK+ K ++SG L+ D
Sbjct: 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPD 60
Query: 62 AIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMF 121
IV +++ +R++ PDC GFILDG+PRTVDQA++L + + D VIEL V D +
Sbjct: 61 EIVIKLLKERLKKPDCKKGFILDGFPRTVDQAEALDELL-DEGIKPDKVIELDVPDEVLI 119
Query: 122 KRIQVR-------------VLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDM 168
+RI R + S RSDD + KR+E Y++ PL YY+
Sbjct: 120 ERILGRRICPVSGRVYHLGKDDVTGEPLSQRSDDNEETIKKRLEVYKEQTAPLIDYYKKK 179
Query: 169 GCLYIIDGMLDMDEV 183
G L IDG D+DEV
Sbjct: 180 GKLVEIDGSGDIDEV 194
>gnl|CDD|144120 pfam00406, ADK, Adenylate kinase.
Length = 186
Score = 165 bits (421), Expect = 5e-42
Identities = 72/186 (38%), Positives = 98/186 (52%), Gaps = 22/186 (11%)
Query: 5 FLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIV 64
LGPPG+GKGTQA R+ QK + LSTGD+LRAEV T LGK+ K M+ G L+ D +V
Sbjct: 1 LLGPPGAGKGTQAERIVQKYGIVHLSTGDLLRAEVKSGTELGKEAKEYMDKGELVPDEVV 60
Query: 65 NQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRI 124
+V +R+ DC +GF+LDG+PRTV QA++L + +D VIE V D + +R+
Sbjct: 61 VGLVKERLEQNDCKNGFLLDGFPRTVPQAEALEE-MLEYGIKLDYVIEFDVPDEVLVERL 119
Query: 125 QVR---------------------VLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSS 163
R + S RSDD + KR+E Y K P+
Sbjct: 120 TGRRIHPNSGRSYHLEFNPPKVPGKDDVTGEPLSQRSDDNEETVKKRLETYHKQTEPVID 179
Query: 164 YYRDMG 169
YY+ G
Sbjct: 180 YYKKKG 185
>gnl|CDD|30909 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 165 bits (418), Expect = 1e-41
Identities = 75/191 (39%), Positives = 111/191 (58%), Gaps = 14/191 (7%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLIS 60
MRI+ LGPPG+GK T A +L++KL +P L TGD+LRA + T LG+++K ++ G L+
Sbjct: 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVP 60
Query: 61 DAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASM 120
D IVN +V +R+ DC +GFILDG+PRT+ QA++L + + +D VIEL V + +
Sbjct: 61 DEIVNGLVKERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELL 120
Query: 121 FKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDM 180
+R+ R VR DD + KR++ Y + PL YY IDG ++
Sbjct: 121 LERLLGR---------RVREDDNEETVKKRLKVYHEQTAPLIEYYS-----VTIDGSGEI 166
Query: 181 DEVSRSIDSLL 191
+EV I L
Sbjct: 167 EEVLADILKAL 177
>gnl|CDD|38288 KOG3078, KOG3078, KOG3078, Adenylate kinase [Nucleotide transport
and metabolism].
Length = 235
Score = 134 bits (339), Expect = 1e-32
Identities = 76/212 (35%), Positives = 112/212 (52%), Gaps = 26/212 (12%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLIS 60
+R + LG PGSGKGTQA RL++ V +STGD+LR E+ T LGK+ K +++ G L+
Sbjct: 16 VRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVP 75
Query: 61 DAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASM 120
D +V +++ R+ P C GFILDG+PRTV QA+ L I ID VI L+V + +
Sbjct: 76 DEVVVRLLEKRLENPRCQKGFILDGFPRTVQQAEELLDRI----AQIDLVINLKVPEEVL 131
Query: 121 FKRIQVRVL--------------------EAIASEKSV-RSDDKYDVFLKRIENYRKTIL 159
RI R + + I E + R DDK +V KR++ Y++
Sbjct: 132 VDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQREDDKPEVVKKRLKAYKEQTK 191
Query: 160 PLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLL 191
P+ YY+ G L G +EV ++ + L
Sbjct: 192 PVLEYYKKKGVLIEFSGE-KPEEVFPNVYAFL 222
>gnl|CDD|38289 KOG3079, KOG3079, KOG3079, Uridylate kinase/adenylate kinase
[Nucleotide transport and metabolism].
Length = 195
Score = 122 bits (307), Expect = 8e-29
Identities = 63/194 (32%), Positives = 99/194 (51%), Gaps = 11/194 (5%)
Query: 3 IIF-LGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDR-NTLLGKQVKGSMESGSLIS 60
IIF LG PGSGKGTQ ++ +K LS GD+LRAE+ + G +K +++G L+
Sbjct: 10 IIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVP 69
Query: 61 DAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASM 120
I ++ + +R +GF++DGYPR VDQ F + D V+ + +M
Sbjct: 70 VEITLSLLEEAMRSSGDSNGFLIDGYPRNVDQLV---EFERKIQGDPDFVLFFDCPEETM 126
Query: 121 FKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDM 180
KR+ R + + RSDD + KR+E Y K+ LP+ YY G L I+ +
Sbjct: 127 LKRLLHR------GQSNSRSDDNEESIKKRLETYNKSTLPVIEYYEKKGKLLKINAERSV 180
Query: 181 DEVSRSIDSLLVSV 194
D+V + + + +
Sbjct: 181 DDVFEEVVTAIDAA 194
>gnl|CDD|73296 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor..
Length = 147
Score = 39.0 bits (91), Expect = 8e-04
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 7 GPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDR 41
GP GSGK T A L++KL +P L TG + EV +
Sbjct: 6 GPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGK 40
>gnl|CDD|30631 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 222
Score = 37.9 bits (88), Expect = 0.002
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 7 GPPGSGKGTQACRLSQKLNVPQLSTGDMLRA 37
GP GSGK T A L++KL L TG M RA
Sbjct: 11 GPAGSGKSTVAKILAEKLGFHYLDTGAMYRA 41
>gnl|CDD|31299 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 179
Score = 37.1 bits (86), Expect = 0.003
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLR 36
M I G PGSGK T A L++ L + +S G + R
Sbjct: 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFR 36
>gnl|CDD|30190 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as
thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor.
TMPK represents the rate-limiting step in either de novo
or salvage biosynthesis of thymidine triphosphate
(TTP)..
Length = 200
Score = 36.4 bits (84), Expect = 0.005
Identities = 44/215 (20%), Positives = 78/215 (36%), Gaps = 41/215 (19%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLN------VPQLSTGDMLRAEVDRNTLLGKQVKGSME 54
M I+F G G+GK T L+++L V G E R LL + +
Sbjct: 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDP 60
Query: 55 SG--------------SLISDAIVNQ--VVCDRIRLPDCDSGFILDGYPRTVDQA--KSL 96
+I A+ V+ DR DS G R + +A ++L
Sbjct: 61 RAELLLFAADRAQHVEEVIKPALARGKIVLSDRF----VDSSLAYQGAGRGLGEALIEAL 116
Query: 97 HAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRK 156
+ + D I L ++ RI+ R + R + + F +R+ R+
Sbjct: 117 NDLATG-GLKPDLTILLDIDPEVGLARIEARGRDD-------RDEQEGLEFHERV---RE 165
Query: 157 TILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLL 191
L L++ ++ + +ID ++EV I +
Sbjct: 166 GYLELAA--QEPERIIVIDASQPLEEVLAEILKAI 198
>gnl|CDD|32119 COG1936, COG1936, Predicted nucleotide kinase (related to CMP and
AMP kinases) [Nucleotide transport and metabolism].
Length = 180
Score = 32.9 bits (75), Expect = 0.055
Identities = 40/191 (20%), Positives = 77/191 (40%), Gaps = 46/191 (24%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLR----------------AEVDRNTL 44
M I G PG GK T C+L ++L + ++ + +VD+
Sbjct: 1 MLIAITGTPGVGK-TTVCKLLRELGYKVIELNELAKENGLYTEYDELRKSVIVDVDK--- 56
Query: 45 LGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCDSGFILDGYP-----RTVDQAKSLHAF 99
L K+++ + GS I D+ ++ ++ PDCD +L P R + S
Sbjct: 57 LRKRLEELLREGSGIVDSHLSHLL------PDCDLVVVLRADPEVLYERLKGRGYSEEKI 110
Query: 100 ISNMDCAI------------DAVIELRVEDASMFKRIQVRVLEAIASEKSVRSD--DKYD 145
+ N++ I +AVIE+ + S + + +++ I + R D +
Sbjct: 111 LENVEAEILDVILIEAVERFEAVIEVDTTNRSP-EEVAEEIIDIIGGGRKKRVGVVDWLE 169
Query: 146 VFLKRIENYRK 156
+ +E+YR+
Sbjct: 170 ELEEILESYRR 180
>gnl|CDD|31805 COG1618, COG1618, Predicted nucleotide kinase [Nucleotide
transport and metabolism].
Length = 179
Score = 32.9 bits (75), Expect = 0.060
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRN 42
M+I G PG GK T ++++KL G + EV
Sbjct: 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREG 47
>gnl|CDD|31047 COG0703, AroK, Shikimate kinase [Amino acid transport and
metabolism].
Length = 172
Score = 32.9 bits (75), Expect = 0.065
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVP 27
M I+ +G G+GK T L++ LN+P
Sbjct: 3 MNIVLIGFMGAGKSTIGRALAKALNLP 29
>gnl|CDD|38557 KOG3347, KOG3347, KOG3347, Predicted nucleotide kinase/nuclear
protein involved oxidative stress response [Nucleotide
transport and metabolism].
Length = 176
Score = 32.2 bits (73), Expect = 0.099
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 22/136 (16%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAE--------------VDRNTLLG 46
I+ G PG+GK T A RL++K + + D+++ +D + +L
Sbjct: 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCHILDEDKVL- 66
Query: 47 KQVKGSMESGSLISDAIVNQVV----CDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISN 102
+++ M G I D D + + + + Y R + S N
Sbjct: 67 DELEPLMIEGGNIVDYHGCDFFPERWFDLVVVLRTPNSVL---YDRLKSRGYSEKKIKEN 123
Query: 103 MDCAIDAVIELRVEDA 118
++C I V+ ++
Sbjct: 124 IECEIFGVVLEEARES 139
>gnl|CDD|30191 cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family
consists of various deoxynucleoside kinases including
deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC
2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC
2.7.1.21) kinases. They are key enzymes in the salvage
of deoxyribonucleosides originating from extra- or
intracellular breakdown of DNA..
Length = 193
Score = 31.7 bits (72), Expect = 0.13
Identities = 36/185 (19%), Positives = 61/185 (32%), Gaps = 32/185 (17%)
Query: 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGK------------QV 49
I+ G G+GK T A L++ L + + + +V+ N L K Q+
Sbjct: 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVP--EPVEPDVEGNPFLEKFYEDPKRWAFPFQL 58
Query: 50 KGSMESGSLISDAIVNQVVCDRI---RLPDCDSGF----ILDGYPRTVDQA--KSLHAFI 100
+ DA+ + + R D F + +G + L +
Sbjct: 59 YFLLSRLKQYKDALEHLSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNL 118
Query: 101 SNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIEN-YRKTIL 159
D VI L + KRI+ R E+ + D +L+ + Y K L
Sbjct: 119 IPELLPPDLVIYLDASPETCLKRIKKR---GRPEEQGIPLD-----YLEDLHEAYEKWFL 170
Query: 160 PLSSY 164
P
Sbjct: 171 PQMYE 175
>gnl|CDD|30200 cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK)
catalyzes the phosphorylation of adenosine
5'-phosphosulfate to form 3'-phosphoadenosine
5'-phosphosulfate (PAPS). The end-product PAPS is a
biologically "activated" sulfate form important for the
assimilation of inorganic sulfate..
Length = 149
Score = 30.8 bits (70), Expect = 0.25
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLST----GDMLRAEVDRN 42
I G GSGK T A L +KL GD +R ++++
Sbjct: 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKD 45
>gnl|CDD|30188 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway
which converts erythrose-4-phosphate to chorismic acid,
found in bacteria, fungi and plants. Chorismic acid is
a important intermediate in the synthesis of aromatic
compounds, such as aromatic amino acids, p-aminobenzoic
acid, folate and ubiquinone. Shikimate kinase catalyses
the phosphorylation of the 3-hydroxyl group of shikimic
acid using ATP..
Length = 154
Score = 30.6 bits (69), Expect = 0.27
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDR 41
I+ +G G+GK T L++ L +P + +++
Sbjct: 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM 40
>gnl|CDD|31416 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 368
Score = 30.7 bits (69), Expect = 0.31
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQV 49
++F GPPG+GK A L+ + VP L V L+G+ V
Sbjct: 154 VLFYGPPGTGKTMMAKALANEAKVPLLL--------VKATELIGEHV 192
>gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI.
Magnesium-chelatase is a three-component enzyme that
catalyses the insertion of Mg2+ into protoporphyrin IX.
This is the first unique step in the synthesis of
(bacterio)chlorophyll. Due to this, it is thought that
Mg-chelatase has an important role in channelling
inter- mediates into the (bacterio)chlorophyll branch
in response to conditions suitable for photosynthetic
growth. ChlI and BchD have molecular weight between
38-42 kDa.
Length = 207
Score = 30.6 bits (70), Expect = 0.34
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDML 35
++ +GPPGSGK A RL L P L+ + L
Sbjct: 25 LLMIGPPGSGKTMLAKRLPGIL--PPLTEQEAL 55
>gnl|CDD|30672 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase
[Translation, ribosomal structure and biogenesis].
Length = 308
Score = 30.2 bits (68), Expect = 0.42
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 1 MRIIFL-GPPGSGKGTQACRLSQKLNVPQLSTGDML 35
++I + GP SGK A L+++L +S M
Sbjct: 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQ 38
>gnl|CDD|32257 COG2074, COG2074, 2-phosphoglycerate kinase [Carbohydrate transport
and metabolism].
Length = 299
Score = 29.9 bits (67), Expect = 0.48
Identities = 46/224 (20%), Positives = 94/224 (41%), Gaps = 49/224 (21%)
Query: 2 RIIFLG-PPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLIS 60
II +G G GK T A L+++L + + + D +R EV R ++ ++ ++ + S
Sbjct: 90 LIILIGGASGVGKSTIAGELARRLGIRSVISTDSIR-EVLRK-IISPELLPTLHTSSY-- 145
Query: 61 DAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASM 120
DA +R P ++ I+ G+ DQA ++ I+AVIE +E+
Sbjct: 146 DAW------KALRDPTDENP-IIAGF---EDQASAVMV-------GIEAVIERAIEEGED 188
Query: 121 FKRIQVRVLEAIASEKSVRS------------DDKYDVFLKRIENYRKTILPLSSY---- 164
V ++ + E+++ + + + F RI Y P Y
Sbjct: 189 LIIEGVHLVPGLIKEEALGNNVFMFMLYIADEELHRERFYDRI-RYTHASRPGGRYLEYF 247
Query: 165 --YRDMGCLYIID-------GMLDMDEVSRSIDSLLVSVRKKCS 199
R + Y+++ +++ D++ ++D +L +RK+
Sbjct: 248 KEIRTIH-DYLVERAREHGVPVIENDDIDETVDRILEDIRKRTV 290
>gnl|CDD|31412 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 408
Score = 29.8 bits (67), Expect = 0.50
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNVP 27
I+ +GP GSGK A L++ LNVP
Sbjct: 100 ILLIGPTGSGKTLLAQTLAKILNVP 124
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase
fold. The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons,
ATPase subunits of proteases, helicases, or
nucleic-acid stimulated ATPases. The AAA+ proteins
contain several distinct features in addition to the
conserved alpha-beta-alpha core domain structure and
the Walker A and B motifs of the P-loop NTPases..
Length = 151
Score = 29.8 bits (67), Expect = 0.51
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQ-----LSTGDMLRAEVDRN 42
++ GPPG+GK T A ++ +L P L+ D+L V
Sbjct: 22 LLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAE 66
>gnl|CDD|30474 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and
metabolism].
Length = 208
Score = 29.9 bits (67), Expect = 0.51
Identities = 53/221 (23%), Positives = 85/221 (38%), Gaps = 39/221 (17%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLST------GDMLRAEVDRNTLLGKQVKGSME 54
M I+ G G+GK TQA L ++L + G E R LL + K S +
Sbjct: 4 MFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGEEKLSPK 63
Query: 55 SGSLISDAIVNQ---------------VVCDRIRLPDCDSGFILDGYPRTVDQA--KSLH 97
+ +L+ A Q V+CDR DS G R +D +L+
Sbjct: 64 AEALLFAADRAQHLEEVIKPALKEGKVVICDRY----VDSSLAYQGGGRGLDLDWVLALN 119
Query: 98 AFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKT 157
F D + L V +RI+ R E R + + D FL+++ R+
Sbjct: 120 EFAPG-GLKPDLTLYLDVPPEVALERIRKR------GELRDRFEKEDDEFLEKV---REG 169
Query: 158 ILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLLVSVRKKC 198
L L++ + + + +ID ++EV I +L C
Sbjct: 170 YLELAAKFPER--IIVIDASRPLEEVHEEILKILKERLGLC 208
>gnl|CDD|35963 KOG0744, KOG0744, KOG0744, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 423
Score = 29.9 bits (67), Expect = 0.52
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 9/63 (14%)
Query: 2 RIIFL-GPPGSGKGTQACRLSQKLNVPQLST---GDMLRAEVDRNTLLGKQVKGSMESGS 57
R+I L GPPG+GK + L+QKL++ G ++ E++ ++L K ESG
Sbjct: 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI--EINSHSLFSKWFS---ESGK 232
Query: 58 LIS 60
L++
Sbjct: 233 LVA 235
>gnl|CDD|110578 pfam01583, APS_kinase, Adenylylsulphate kinase. Enzyme that
catalyses the phosphorylation of adenylylsulphate to
3'-phosphoadenylylsulfate. This domain contains an ATP
binding P-loop motif.
Length = 157
Score = 29.9 bits (68), Expect = 0.53
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLST----GDMLRAEVDRN 42
+ F G GSGK T A L +KL +S GD +R ++++
Sbjct: 5 VWFTGLSGSGKSTIANALERKLFAQGISVYVLDGDNVRHGLNKD 48
>gnl|CDD|30194 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits..
Length = 150
Score = 29.8 bits (67), Expect = 0.54
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDR 41
I+ +G GSGK T L+++L P + GD L +
Sbjct: 2 IVVMGVSGSGKSTVGKALAERLGAPFID-GDDLHPPANI 39
>gnl|CDD|32437 COG2256, MGS1, ATPase related to the helicase subunit of the
Holliday junction resolvase [DNA replication,
recombination, and repair].
Length = 436
Score = 29.8 bits (67), Expect = 0.56
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 4 IFLGPPGSGKGTQACRLSQKLNVP 27
I GPPG+GK T A ++ N
Sbjct: 52 ILWGPPGTGKTTLARLIAGTTNAA 75
>gnl|CDD|36207 KOG0989, KOG0989, KOG0989, Replication factor C, subunit RFC4
[Replication, recombination and repair].
Length = 346
Score = 29.5 bits (66), Expect = 0.57
Identities = 47/221 (21%), Positives = 82/221 (37%), Gaps = 35/221 (15%)
Query: 4 IFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLR--AEVDRNTLLGKQVKGSMESGSLISD 61
+F GPPG+GK + A ++ LN QL +L A +R + ++ + +++
Sbjct: 61 LFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLK 120
Query: 62 AIVNQVVCDRIR---LPDCDS---------GFILDGYPRTVDQAKSLHAFISNMDCAIDA 109
C + L +CDS ++ + RT I N +
Sbjct: 121 RSDGY-PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTT-----RFILICN---YLSR 171
Query: 110 VIELRVEDASMFK------RIQVRVLEAIASEKSVR-SDDKYDVFLKRIEN-YRKTILPL 161
+I V F+ V LE IAS++ V DD + K + R+ I L
Sbjct: 172 IIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTL 231
Query: 162 SSYYRDMGCLYIIDGMLDMDEVSRSI-DSLLVSVRKKCSSS 201
S I L +E++ + D L+ + + S+
Sbjct: 232 QSLSLL---GKRITTSLVNEELAGVVPDEKLLDLLELALSA 269
>gnl|CDD|35455 KOG0234, KOG0234, KOG0234, Fructose-6-phosphate
2-kinase/fructose-2,6-biphosphatase [Carbohydrate
transport and metabolism].
Length = 438
Score = 29.1 bits (65), Expect = 0.88
Identities = 37/180 (20%), Positives = 64/180 (35%), Gaps = 13/180 (7%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSM------ESG 56
I+ +G P GK + +L++ LN ++T E R K+V
Sbjct: 31 IVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRR--EAVKKVDSEPFFLPDNAEA 88
Query: 57 SLISDAIVNQVVCDRIRLPDCDSGF--ILDGYPRTVDQAKSLHAFIS-NMDCAIDAVIEL 113
S + + + D + ++G I D T ++ K + F + + +
Sbjct: 89 SKLRKQLALLALNDLLHFLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESV 148
Query: 114 RVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYI 173
+ + I+ + K ++ FLKRI NY K PL RD YI
Sbjct: 149 CNDPNLINNNIREVKHVS-PDYKGKDQEEALKDFLKRIRNYEKYYEPLDR-ARDKDLSYI 206
>gnl|CDD|146080 pfam03266, DUF265, Protein of unknown function, DUF265.
Length = 168
Score = 29.1 bits (66), Expect = 0.88
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEV 39
RI GPPG GK T ++ + L + G EV
Sbjct: 1 RIFITGPPGVGKTTLVKKVIELLKSEGVKVGGFYTPEV 38
>gnl|CDD|30586 COG0237, CoaE, Dephospho-CoA kinase [Coenzyme metabolism].
Length = 201
Score = 28.7 bits (64), Expect = 1.1
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 1 MRIIFL-GPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVK 50
M II L G GSGK T ++ +L P + D+ R V+ +++
Sbjct: 2 MLIIGLTGGIGSGKST-VAKILAELGFPVIDADDVAREVVEPGGEALQEIA 51
>gnl|CDD|35964 KOG0745, KOG0745, KOG0745, Putative ATP-dependent Clp-type protease
(AAA+ ATPase superfamily) [Posttranslational
modification, protein turnover, chaperones].
Length = 564
Score = 28.8 bits (64), Expect = 1.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNVP 27
++ LGP GSGK A L++ L+VP
Sbjct: 229 VLLLGPTGSGKTLLAQTLARVLDVP 253
>gnl|CDD|30875 COG0529, CysC, Adenylylsulfate kinase and related kinases
[Inorganic ion transport and metabolism].
Length = 197
Score = 28.7 bits (64), Expect = 1.2
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLST----GDMLRAEVDRN 42
I F G GSGK T A L +KL GD +R ++R+
Sbjct: 26 IWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRD 69
>gnl|CDD|147726 pfam05729, NACHT, NACHT domain. This NTPase domain is found in
apoptosis proteins as well as those involved in MHC
transcription activation. This family is closely
related to pfam00931.
Length = 165
Score = 28.4 bits (64), Expect = 1.5
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 2 RIIFLGPPGSGKGTQACRLSQKLNVPQL 29
+I G GSGK T +L+ +L
Sbjct: 2 TVILQGEAGSGKTTLLQKLALLWAQGKL 29
>gnl|CDD|31417 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein
[Transcription].
Length = 450
Score = 28.3 bits (63), Expect = 1.6
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 3 IIFLGPPGSGKGTQACRLSQKL--NVP--QLSTGDMLRAEVDRNTLL 45
I+ +GPPG+GK A ++++L +VP +S ++ EV + L
Sbjct: 68 ILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEAL 114
>gnl|CDD|30407 COG0058, GlgP, Glucan phosphorylase [Carbohydrate transport and
metabolism].
Length = 750
Score = 28.3 bits (63), Expect = 1.6
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 10/89 (11%)
Query: 73 RLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAI 132
L D I D + +D L F A D + + + R+ E I
Sbjct: 424 GLADLLDEKIGDEWLNDLDILDELLWF------ADDKAFRELIAEIKR--ENKKRLAEEI 475
Query: 133 ASEKSVRSDDK--YDVFLKRIENYRKTIL 159
A + D +D +RI Y++ +L
Sbjct: 476 ADRTGIEVDPNALFDGQARRIHEYKRQLL 504
>gnl|CDD|107378 cd06383, PBP1_iGluR_AMPA_Like, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of uncharacterized AMPA-like receptors.
N-terminal leucine/isoleucine/valine-binding protein
(LIVBP)-like domain of uncharacterized AMPA-like
receptors. While this N-terminal domain belongs to the
periplasmic-binding fold type I superfamily, the
glutamate-binding domain of the iGluR is structurally
homologous to the periplasmic-binding fold type II. The
LIVBP-like domain of iGluRs is thought to play a role in
the initial assembly of iGluR subunits, but it is not
well understood how this domain is arranged and
functions in intact iGluR. AMPA receptors consist of
four types of subunits (GluR1, GluR2, GluR3, and GluR4)
which combine to form a tetramer and play an important
roles in mediating the rapid excitatory synaptic
current.
Length = 368
Score = 28.2 bits (63), Expect = 1.6
Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 19/118 (16%)
Query: 71 RIRLPDCDSGFILDGYP----RTVDQAKSL-------HAFISNMDCAIDAVIELRVEDAS 119
R+R D + FIL +DQA + F+ N D I + ++ +AS
Sbjct: 179 RLRNLDIKNIFILGSTEEIIRYVLDQALAEGFMGRKYAWFLGNPDLGIYDDLSCQLRNAS 238
Query: 120 -------MFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGC 170
M + VR E ++R ++ R+ +L + + R M
Sbjct: 239 IFVTRPMMDYQSSVRGALLRTDEPTLRPVFYFEWAF-RLFLAYDAVLAVGEWPRRMRK 295
>gnl|CDD|110677 pfam01695, IstB, IstB-like ATP binding protein. This protein
contains an ATP/GTP binding P-loop motif. It is found
associated with IS21 family insertion sequences. The
function of this protein is unknown, but it may perform
a transposase function.
Length = 178
Score = 28.0 bits (63), Expect = 1.8
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 7/25 (28%)
Query: 3 IIFLGPPGSGK-------GTQACRL 20
++ LGPPG GK G QACR
Sbjct: 50 LLLLGPPGVGKTHLACALGHQACRA 74
>gnl|CDD|33845 COG4088, COG4088, Predicted nucleotide kinase [Nucleotide
transport and metabolism].
Length = 261
Score = 28.0 bits (62), Expect = 2.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKL 24
II G PGSGK T A L+++L
Sbjct: 2 PLIILTGYPGSGKTTFAKELAKEL 25
>gnl|CDD|35961 KOG0742, KOG0742, KOG0742, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 630
Score = 27.0 bits (59), Expect = 3.3
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 3 IIFLGPPGSGKGTQACRLSQK--LNVPQLSTGDM 34
I+F GPPG+GK A L++ L+ ++ GD+
Sbjct: 387 ILFYGPPGTGKTMFARELARHSGLDYAIMTGGDV 420
>gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of
nucleotides onto phosphosugars. Nucleotidyltransferases
transfer nucleotides onto phosphosugars. The enzyme
family includes Alpha-D-Glucose-1-Phosphate
Cytidylyltransferase, Mannose-1-phosphate
guanyltransferase, and Glucose-1-phosphate
thymidylyltransferase. The products are activated sugars
that are precursors for synthesis of lipopolysaccharide,
glycolipids and polysaccharides.
Length = 217
Score = 27.2 bits (61), Expect = 3.4
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 127 RVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMG 169
+L+ I D+ D IE + P+ Y+ D+G
Sbjct: 175 EILDYIPEILPRGEDELTDAIPLLIEEGKVYGYPVDGYWLDIG 217
>gnl|CDD|30951 COG0606, COG0606, Predicted ATPase with chaperone activity
[Posttranslational modification, protein turnover,
chaperones].
Length = 490
Score = 27.1 bits (60), Expect = 3.7
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEV 39
++ +GPPG+GK A RL L P LS + L
Sbjct: 201 LLLVGPPGTGKTMLASRLPGLL--PPLSIPEALEVSA 235
>gnl|CDD|31617 COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport
and metabolism].
Length = 216
Score = 26.8 bits (59), Expect = 3.9
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGK 47
M I+ G G+GK T A L++ L + V+ N L
Sbjct: 5 MVIVIEGMIGAGKSTLAQALAEHLGFK------VFYELVEDNPFLDL 45
>gnl|CDD|145402 pfam02223, Thymidylate_kin, Thymidylate kinase.
Length = 186
Score = 26.9 bits (60), Expect = 4.4
Identities = 39/206 (18%), Positives = 65/206 (31%), Gaps = 47/206 (22%)
Query: 7 GPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVN- 65
G G+GK TQA L ++L + +L E T +G++++ + +S
Sbjct: 3 GLDGAGKTTQAELLKERL--KEQGIKVVLTRE-PGGTPIGEKIRELLLRNEELSPLTEAL 59
Query: 66 ----------------------QVVCDRIRLPDCDSGFILDGYPRTVDQA--KSLHAFIS 101
V+CDR S G + SL+ +
Sbjct: 60 LFAADRIEHLEEKIKPALKQGKTVICDRY----LFSSIAYQGAAGGLGLDLVLSLNPDVP 115
Query: 102 NMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPL 161
D L V+ KR++ R + + D R+ L L
Sbjct: 116 GP--KPDLTFLLDVDPEVALKRLRRRGELDEFEFE------QLDFL----RKVRERYLEL 163
Query: 162 SSYYRDMGCLYIIDGMLDMDEVSRSI 187
+D + IID ++EV I
Sbjct: 164 ---AKDDERILIIDASNSIEEVHEEI 186
>gnl|CDD|36738 KOG1525, KOG1525, KOG1525, Sister chromatid cohesion complex
Cohesin, subunit PDS5 [Cell cycle control, cell
division, chromosome partitioning].
Length = 1266
Score = 26.5 bits (58), Expect = 4.8
Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 12/112 (10%)
Query: 90 VDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFL- 148
V+ K ++N A + I L + + + + ++VR I + ++ Y L
Sbjct: 321 VESIK--QCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLL 378
Query: 149 ---------KRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLL 191
K+I+ ++ + L+ Y+++ CL G S D LL
Sbjct: 379 KLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLL 430
>gnl|CDD|144620 pfam01094, ANF_receptor, Receptor family ligand binding region.
This family includes extracellular ligand binding
domains of a wide range of receptors. This family also
includes the bacterial amino acid binding proteins of
known structure.
Length = 344
Score = 26.7 bits (59), Expect = 5.1
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 5 FLGPPGSGKGTQACRLSQKLNVPQLSTG 32
+GP S RL+ +P +S G
Sbjct: 54 VIGPSCSSVAIAVARLANAFGIPMISYG 81
>gnl|CDD|177080 CHL00176, ftsH, cell division protein; Validated.
Length = 638
Score = 26.6 bits (59), Expect = 5.1
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLS 30
++ +GPPG+GK A ++ + VP S
Sbjct: 219 VLLVGPPGTGKTLLAKAIAGEAEVPFFS 246
>gnl|CDD|32436 COG2255, RuvB, Holliday junction resolvasome, helicase subunit
[DNA replication, recombination, and repair].
Length = 332
Score = 26.6 bits (59), Expect = 5.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNV 26
++ GPPG GK T A ++ +L V
Sbjct: 55 VLLFGPPGLGKTTLAHIIANELGV 78
>gnl|CDD|37310 KOG2099, KOG2099, KOG2099, Glycogen phosphorylase [Carbohydrate
transport and metabolism].
Length = 843
Score = 26.4 bits (58), Expect = 5.2
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 74 LPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIA 133
L D + I + + +DQ L F + E + E A + + ++++ +
Sbjct: 501 LADLITEKIGEEWITDLDQLTKLRKFADDE--------EFQREWAKVKQENKLKLAAYLE 552
Query: 134 SEKSVRSDDK--YDVFLKRIENYRKTIL 159
E V+ + +D+ +KRI Y++ +L
Sbjct: 553 KEYGVKINPSSMFDIQVKRIHEYKRQLL 580
>gnl|CDD|35854 KOG0635, KOG0635, KOG0635, Adenosine 5'-phosphosulfate kinase
[Inorganic ion transport and metabolism].
Length = 207
Score = 26.5 bits (58), Expect = 5.8
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 7 GPPGSGKGTQACRLSQKLNVPQLST----GDMLRAEVDRN 42
G GSGK T AC LSQ L T GD +R ++++
Sbjct: 38 GLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKD 77
>gnl|CDD|30727 COG0378, HypB, Ni2+-binding GTPase involved in regulation of
expression and maturation of urease and hydrogenase
[Posttranslational modification, protein turnover,
chaperones / Transcription].
Length = 202
Score = 26.3 bits (58), Expect = 6.5
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 2 RIIFLGPPGSGKGT---QACR-LSQKLNVPQLSTGDMLRAEVDR 41
RI GPPGSGK + R L + + + TGD+ E
Sbjct: 15 RIGVGGPPGSGKTALIEKTLRALKDEYKIAVI-TGDIYTKEDAD 57
>gnl|CDD|31058 COG0714, COG0714, MoxR-like ATPases [General function prediction
only].
Length = 329
Score = 26.2 bits (57), Expect = 6.7
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 2 RIIFLGPPGSGKGTQACRLSQKLNVP----QLSTGDMLRAEVD 40
++ GPPG GK A L++ L +P Q T D+L +++
Sbjct: 45 HVLLEGPPGVGKTLLARALARALGLPFVRIQC-TPDLLPSDLL 86
>gnl|CDD|38801 KOG3595, KOG3595, KOG3595, Dyneins, heavy chain [Cytoskeleton].
Length = 1395
Score = 26.1 bits (57), Expect = 6.7
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 26/93 (27%)
Query: 1 MRIIFLGPPGSGKGTQAC--------RLSQKLNVPQLSTGDMLR------AEVDRNTLLG 46
++ +GP G+GK R LN +++ ++L+ + R+ G
Sbjct: 128 KPVLLVGPTGTGKTVLVLSELRSLQDREVYLLNFSSVTSSELLQEIIESKLDKRRSGNYG 187
Query: 47 KQVKGSMESGSLISDAIVNQVVCDRIRLPDCDS 79
+ + + D I +P D
Sbjct: 188 PPLGKKL------------VLFVDDINMPALDK 208
>gnl|CDD|35952 KOG0733, KOG0733, KOG0733, Nuclear AAA ATPase (VCP subfamily)
[Posttranslational modification, protein turnover,
chaperones].
Length = 802
Score = 26.1 bits (57), Expect = 6.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLS 30
++ GPPG GK + A ++ +L VP LS
Sbjct: 226 VLLHGPPGCGKTSLANAIAGELGVPFLS 253
>gnl|CDD|107347 cd06352, PBP1_NPR_GC_like, Ligand-binding domain of membrane
guanylyl-cyclase receptors. Ligand-binding domain of
membrane guanylyl-cyclase receptors. Membrane guanylyl
cyclases (GC) have a single membrane-spanning region
and are activated by endogenous and exogenous peptides.
This family can be divided into three major
subfamilies: the natriuretic peptide receptors (NPRs),
sensory organ-specific membrane GCs, and the
enterotoxin/guanylin receptors. The binding of peptide
ligands to the receptor results in the activation of
the cytosolic catalytic domain. Three types of NPRs
have been cloned from mammalian tissues: NPR-A/GC-A,
NPR-B/ GC-B, and NPR-C. In addition, two of the GCs,
GC-D and GC-G, appear to be pseudogenes in humans.
Atrial natriuretic peptide (ANP) and brain natriuretic
peptide (BNP) are produced in the heart, and both bind
to the NPR-A. NPR-C, also termed the clearance
receptor, binds each of the natriuretic peptides and
can alter circulating levels of these peptides. The
ligand binding domain of the NPRs exhibits strong
structural similarity to the type I periplasmic binding
fold protein family.
Length = 389
Score = 26.1 bits (58), Expect = 7.0
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 5 FLGPPGSGKGTQACRLSQKLNVPQLSTG 32
F+GP RL+ N+P +S G
Sbjct: 72 FIGPGCPYACAPVARLAAHWNIPMISWG 99
>gnl|CDD|31673 COG1484, DnaC, DNA replication protein [DNA replication,
recombination, and repair].
Length = 254
Score = 26.1 bits (57), Expect = 7.1
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLN-----VPQLSTGDM---LRAEVDRNTLLGKQVKGSME 54
++ LGPPG GK A + +L V ++ D+ L+A D L K ++ +
Sbjct: 108 LVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKK 167
Query: 55 SGSLISDAI 63
LI D I
Sbjct: 168 VDLLIIDDI 176
>gnl|CDD|107293 cd06298, PBP1_CcpA_like, Ligand-binding domain of the catabolite
control protein A (CcpA), which functions as the major
transcriptional regulator of carbon catabolite
repression/regulation. Ligand-binding domain of the
catabolite control protein A (CcpA), which functions as
the major transcriptional regulator of carbon
catabolite repression/regulation (CCR), a process in
which enzymes necessary for the metabolism of
alternative sugars are inhibited in the presence of
glucose. In gram-positive bacteria, CCR is controlled
by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase
system (PTS) and a transcriptional regulator CcpA.
Moreover, CcpA can regulate sporulation and antibiotic
resistance as well as play a role in virulence
development of certain pathogens such as the group A
streptococcus. The ligand binding domain of CcpA is a
member of the LacI-GalR family of bacterial
transcription regulators.
Length = 268
Score = 26.1 bits (58), Expect = 7.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 42 NTLLGKQVKGSMESGSLISDAIVN 65
N LL KQV G + G IS+
Sbjct: 49 NNLLAKQVDGIIFMGGKISEEHRE 72
>gnl|CDD|153286 cd07602, BAR_RhoGAP_OPHN1-like, The Bin/Amphiphysin/Rvs (BAR)
domain of Oligophrenin1-like Rho GTPase Activating
Proteins. BAR domains are dimerization, lipid binding
and curvature sensing modules found in many different
proteins with diverse functions. This subfamily is
composed of Rho and Rac GTPase activating proteins
(GAPs) with similarity to oligophrenin1 (OPHN1). Members
contain an N-terminal BAR domain, followed by a
Pleckstrin homology (PH) domain, and a Rho GAP domain.
Some members contain a C-terminal SH3 domain.
Vertebrates harbor at least three Rho GAPs in this
subfamily including OPHN1, GTPase Regulator Associated
with Focal adhesion kinase (GRAF), GRAF2, and an
uncharacterized protein called GAP10-like. OPHN1, GRAF
and GRAF2 show GAP activity towards RhoA and Cdc42. In
addition, OPHN1 is active towards Rac. BAR domains form
dimers that bind to membranes, induce membrane bending
and curvature, and may also be involved in
protein-protein interactions. The BAR domains of OPHN1
and GRAF directly interact with their Rho GAP domains
and inhibit their activity. The autoinhibited proteins
are able to bind membranes and tubulate liposomes,
showing that the membrane-tubulation and GAP-inhibitory
functions of the BAR domains can occur simultaneously.
Length = 207
Score = 25.7 bits (57), Expect = 8.2
Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 93 AKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIE 152
A++L F +C + + +E A K R++E + E+ ++ + ++ +E
Sbjct: 43 AQTLQNF--KFECIGETQTDDEIEIAESLKEFG-RLIETVEDERDRMLENAEEQLIEPLE 99
Query: 153 NYRKTIL 159
+RK +
Sbjct: 100 KFRKEQI 106
>gnl|CDD|36209 KOG0991, KOG0991, KOG0991, Replication factor C, subunit RFC2
[Replication, recombination and repair].
Length = 333
Score = 25.7 bits (56), Expect = 8.2
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDM-LRAEVDR 41
+I GPPG+GK T L+++L + L A +R
Sbjct: 51 LIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER 90
>gnl|CDD|110585 pfam01591, 6PF2K, 6-phosphofructo-2-kinase. This enzyme occurs as
a bifunctional enzyme with fructose-2,6-bisphosphatase.
The bifunctional enzyme catalyses both the synthesis and
degradation of fructose-2,6-bisphosphate, a potent
regulator of glycolysis. This enzyme contains a P-loop
motif.
Length = 223
Score = 25.8 bits (57), Expect = 9.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 140 SDDKYDVFLKRIENYRKTILPLS 162
++ D F+KR+E Y K PL
Sbjct: 158 PEEAIDDFMKRLECYEKQYEPLD 180
>gnl|CDD|143797 pfam00004, AAA, ATPase family associated with various cellular
activities (AAA). AAA family proteins often perform
chaperone-like functions that assist in the assembly,
operation, or disassembly of protein complexes.
Length = 131
Score = 25.6 bits (57), Expect = 9.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNVP 27
++ GPPG+GK T A ++++L P
Sbjct: 1 LLLYGPPGTGKTTLAKAVAKELGAP 25
>gnl|CDD|31829 COG1643, HrpA, HrpA-like helicases [DNA replication,
recombination, and repair].
Length = 845
Score = 25.7 bits (56), Expect = 9.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 2 RIIFLGPPGSGKGTQ 16
+I +G GSGK TQ
Sbjct: 67 VVIIVGETGSGKTTQ 81
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.137 0.386
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,286,784
Number of extensions: 112306
Number of successful extensions: 556
Number of sequences better than 10.0: 1
Number of HSP's gapped: 547
Number of HSP's successfully gapped: 78
Length of query: 201
Length of database: 6,263,737
Length adjustment: 89
Effective length of query: 112
Effective length of database: 4,340,536
Effective search space: 486140032
Effective search space used: 486140032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.0 bits)