RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780240|ref|YP_003064653.1| adenylate kinase [Candidatus
Liberibacter asiaticus str. psy62]
(201 letters)
>gnl|CDD|178957 PRK00279, adk, adenylate kinase; Reviewed.
Length = 215
Score = 227 bits (582), Expect = 1e-60
Identities = 84/212 (39%), Positives = 117/212 (55%), Gaps = 21/212 (9%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLIS 60
MR+I LGPPG+GKGTQA +++K +P +STGDMLRA V T LGK+ K M++G L+
Sbjct: 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVP 60
Query: 61 DAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASM 120
D IV +V +R+ PDC +GF+LDG+PRT+ QA++L + + +DAVIE+ V D +
Sbjct: 61 DEIVIGLVKERLAQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEEL 120
Query: 121 FKRIQVR---------------------VLEAIASEKSVRSDDKYDVFLKRIENYRKTIL 159
+R+ R + E R+DD + KR+E Y K
Sbjct: 121 VERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTA 180
Query: 160 PLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLL 191
PL YY+ G L IDG +DEV I L
Sbjct: 181 PLIDYYKKKGKLKKIDGTGSIDEVFADILKAL 212
>gnl|CDD|162313 TIGR01351, adk, adenylate kinases. Adenylate kinase (EC 2.7.4.3)
converts ATP + AMP to ADP + ADP, that is, uses ATP as a
phosphate donor for AMP. Most members of this family are
known or believed to be adenylate kinase. However, some
members accept other nucleotide triphosphates as donors,
may be unable to use ATP, and may fail to complement
adenylate kinase mutants. An example of a
nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10)
is a GTP:AMP phosphotransferase. This family is
designated subfamily rather than equivalog for this
reason.
Length = 210
Score = 202 bits (517), Expect = 4e-53
Identities = 87/212 (41%), Positives = 120/212 (56%), Gaps = 25/212 (11%)
Query: 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISD 61
R++ LGPPGSGKGTQA R+++K +P +STGD+LRAE+ T LGK+ K ME G L+ D
Sbjct: 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPD 60
Query: 62 AIVNQVVCDRIR-LPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASM 120
IVNQ+V +R+ D ++GFILDG+PRT+ QA++L A + IDAVIEL V D +
Sbjct: 61 EIVNQLVKERLTQNQDNENGFILDGFPRTLSQAEALDALL---KEKIDAVIELDVPDEEL 117
Query: 121 FKRIQVRVL---------------------EAIASEKSVRSDDKYDVFLKRIENYRKTIL 159
+R+ R + + R DD +V KR+E Y++
Sbjct: 118 VERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVYKEQTE 177
Query: 160 PLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLL 191
PL YY+ G L IDG +DEV + I L
Sbjct: 178 PLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 199 bits (508), Expect = 4e-52
Identities = 92/196 (46%), Positives = 127/196 (64%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLIS 60
MR+I LGPPG+GKGTQA RL Q+ + QLSTGDMLRA V T +G + K M SG L+
Sbjct: 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVP 60
Query: 61 DAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASM 120
D +V ++ DRI PD +GFILDG+PRTV QA++L A + + +DAV+ELRV + ++
Sbjct: 61 DEVVVGIISDRIEQPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGAL 120
Query: 121 FKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDM 180
R++ RV E A + VR+DD +V KR+ +YR PL YY + L +DGM+ +
Sbjct: 121 LARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTI 180
Query: 181 DEVSRSIDSLLVSVRK 196
DEV+R I +L +V
Sbjct: 181 DEVTREIGRVLAAVGA 196
>gnl|CDD|184729 PRK14532, PRK14532, adenylate kinase; Provisional.
Length = 188
Score = 168 bits (428), Expect = 7e-43
Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 6/191 (3%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLIS 60
M +I GPP +GKGTQA RL ++ + QLSTGDMLRA + + LG++VKG M+ G L+S
Sbjct: 1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVS 60
Query: 61 DAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASM 120
D IV ++ +R+ + G I DG+PRTV QA++L +++ ID VI L+V+D ++
Sbjct: 61 DEIVIALIEERLPEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEAL 120
Query: 121 FKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDM 180
+RI R E+ R DD +VF+ R++ Y PL YY G L +DGM +
Sbjct: 121 IERIVKRF------EEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSI 174
Query: 181 DEVSRSIDSLL 191
+ V+ SID+ L
Sbjct: 175 EAVAASIDAAL 185
>gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional.
Length = 186
Score = 164 bits (417), Expect = 1e-41
Identities = 78/186 (41%), Positives = 115/186 (61%), Gaps = 6/186 (3%)
Query: 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISD 61
IIF+GPPG+GKGTQA L ++L++PQ+STGD+LR V T +G + K M++G L+ D
Sbjct: 3 NIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPD 62
Query: 62 AIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMF 121
++V ++ DRIR DC +GF+LDG+PRTV+QA +L A + N +ID I L V D +
Sbjct: 63 SVVIGIIKDRIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELL 122
Query: 122 KRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMD 181
KR+ R +E R+DD R++NY K LPL +Y L ++G+ ++
Sbjct: 123 KRLLGR------AEIEGRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLE 176
Query: 182 EVSRSI 187
EV+ I
Sbjct: 177 EVTSLI 182
>gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional.
Length = 184
Score = 162 bits (411), Expect = 6e-41
Identities = 73/190 (38%), Positives = 111/190 (58%), Gaps = 10/190 (5%)
Query: 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISD 61
R+IFLGPPG+GKGTQA L++ L++P +STGD+LR + T LG + +G M+ G L+ D
Sbjct: 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPD 62
Query: 62 AIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMF 121
+V +V +R++ PD +G+ILDG+PR V QA L + + + + V+ L V D +
Sbjct: 63 QLVLDLVQERLQQPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVV 122
Query: 122 KRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMD 181
+R+ R R DD +V +R+E YR+ PL YYRD L IDG ++
Sbjct: 123 ERLLAR----------GRKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVE 172
Query: 182 EVSRSIDSLL 191
V+ + + L
Sbjct: 173 AVTTELKAAL 182
>gnl|CDD|184726 PRK14527, PRK14527, adenylate kinase; Provisional.
Length = 191
Score = 144 bits (365), Expect = 1e-35
Identities = 73/189 (38%), Positives = 107/189 (56%), Gaps = 7/189 (3%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDA 62
+IFLGPPG+GKGTQA RL+Q+L + +LSTGD+LR V R T LG++ K ME+G L+ D
Sbjct: 9 VIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDE 68
Query: 63 IVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFK 122
++ ++ D + + I DG+PRT+ QA++L + + + AV+ L V D + +
Sbjct: 69 LILALIRDELAGME-PVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIR 127
Query: 123 RIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDE 182
RI R + RSDD + +R + YR+ PL YY G L +DG+ DE
Sbjct: 128 RIVERARQE------GRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDE 181
Query: 183 VSRSIDSLL 191
V I L
Sbjct: 182 VYARILKAL 190
>gnl|CDD|172997 PRK14531, PRK14531, adenylate kinase; Provisional.
Length = 183
Score = 139 bits (351), Expect = 6e-34
Identities = 69/190 (36%), Positives = 112/190 (58%), Gaps = 11/190 (5%)
Query: 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISD 61
R++FLGPPG+GKGTQA RL + LSTGD+LR+EV + LG++ + M G L+SD
Sbjct: 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSD 63
Query: 62 AIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMF 121
A+V +V +++ + G++LDG+PRTV QA++L + + I+AV+ L ++DA +
Sbjct: 64 ALVLAIVESQLKALNSG-GWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLI 122
Query: 122 KRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMD 181
+R+ R R+DD V R+E YR+ PL +YR G L ++ ++
Sbjct: 123 ERLLAR----------GRADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIE 172
Query: 182 EVSRSIDSLL 191
++ I+ +L
Sbjct: 173 AITERIEKVL 182
>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional.
Length = 211
Score = 118 bits (297), Expect = 1e-27
Identities = 70/208 (33%), Positives = 110/208 (52%), Gaps = 26/208 (12%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLIS 60
M+++FLGPPGSGKGT A LS +LN +STGD+ R + +T LGK++K +E+G L+
Sbjct: 1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVP 60
Query: 61 DAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASM 120
D+I ++V D+I + FILDG+PR ++QAK+L F+ N+ +I +++ +
Sbjct: 61 DSITIKIVEDKINTIKNNDNFILDGFPRNINQAKALDKFLPNIK-----IINFLIDEELL 115
Query: 121 FKRIQVR-----------VLEAIASEKSV----------RSDDKYDVFLKRIENYRKTIL 159
KR+ R + EK + R DDK + R++ Y+
Sbjct: 116 IKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDKEESLKTRLQEYKLQTK 175
Query: 160 PLSSYYRDMGCLYIIDGMLDMDEVSRSI 187
PL +Y L ID D+DEV + +
Sbjct: 176 PLIEFYSKCNRLNNIDASKDIDEVKKKL 203
>gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase.
Length = 244
Score = 117 bits (295), Expect = 2e-27
Identities = 66/191 (34%), Positives = 101/191 (52%), Gaps = 21/191 (10%)
Query: 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISD 61
R+I +GPPGSGKGTQ+ + + + L+TGDMLRA V T LG + K +M+ G L+SD
Sbjct: 33 RLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 92
Query: 62 AIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMF 121
+V ++ + ++ P C GFILDG+PRTV QA+ L ++ ID V+ ++DA +
Sbjct: 93 DLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILE 152
Query: 122 KRI--------------------QVRVLEAIASEKSV-RSDDKYDVFLKRIENYRKTILP 160
+RI +V ++ + E + R DD V R+E + K P
Sbjct: 153 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 212
Query: 161 LSSYYRDMGCL 171
+ YY G +
Sbjct: 213 VIDYYAKKGVV 223
>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase.
Length = 505
Score = 111 bits (279), Expect = 1e-25
Identities = 71/209 (33%), Positives = 97/209 (46%), Gaps = 24/209 (11%)
Query: 7 GPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQ 66
G P SGKGTQ + K + +STGD+LRAEV T +GK+ K M SG L+ D IV
Sbjct: 4 GAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIA 63
Query: 67 VVCDRIRLPD-CDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQ 125
+V R+ D + G++LDGYPR+ QA+SL + D I L V D + R
Sbjct: 64 MVTGRLSREDAKEKGWLLDGYPRSFAQAQSLEK----LKIRPDIFILLDVPDEILIDRCV 119
Query: 126 VRVL-----------------EAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDM 168
R L E I + R DD + R++ Y+K + S Y D
Sbjct: 120 GRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVKARLQIYKKNAEAILSTYSD- 178
Query: 169 GCLYIIDGMLDMDEVSRSIDSLLVSVRKK 197
+ IDG + V I SLL ++K
Sbjct: 179 -IMVKIDGNRPKEVVFEEISSLLSQIQKD 206
>gnl|CDD|178078 PLN02459, PLN02459, probable adenylate kinase.
Length = 261
Score = 107 bits (268), Expect = 2e-24
Identities = 65/202 (32%), Positives = 98/202 (48%), Gaps = 39/202 (19%)
Query: 4 IFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAI 63
+FLG PG GKGT A RLS+ L VP ++TGD++R E+ + LG Q+K + G L+ D I
Sbjct: 33 VFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEI 92
Query: 64 VNQVVCDRIR--LPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRV-EDASM 120
+ ++ R+ + +SGFILDG+PRTV QA+ L ID V+ L++ E+ +
Sbjct: 93 IFSLLSKRLEAGEEEGESGFILDGFPRTVRQAEILEGVTD-----IDLVVNLKLREEVLV 147
Query: 121 FK----------------------------RIQVRVLEA---IASEKSVRSDDKYDVFLK 149
K I + L AS+ R+DD +V
Sbjct: 148 EKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPPPECASKLITRADDTEEVVKA 207
Query: 150 RIENYRKTILPLSSYYRDMGCL 171
R+ Y++ P+ +YR G L
Sbjct: 208 RLRVYKEESQPVEDFYRKRGKL 229
>gnl|CDD|173382 PTZ00088, PTZ00088, adenylate kinase 1; Provisional.
Length = 229
Score = 104 bits (262), Expect = 1e-23
Identities = 61/224 (27%), Positives = 101/224 (45%), Gaps = 42/224 (18%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLIS 60
++I+ G PG GKGT A LS+K N+ ++ G++LR E+ T +GK+++ + SG+L+
Sbjct: 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVP 66
Query: 61 DAIVNQVVCDRIR--LPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDA 118
D +V +V D I DC GFILDG+PR + Q K L + ID + + +
Sbjct: 67 DNLVIAIVKDEIAKVTDDCFKGFILDGFPRNLKQCKELGKITN-----IDLFVNIYLPRN 121
Query: 119 SMFKRIQVR------------------------VLEAIASEKS-------VRSDDKYDVF 147
+ K++ R +L E RSDD ++
Sbjct: 122 ILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEGCKGNPKLQKRSDDTEEIV 181
Query: 148 LKRIENYRKTILPLSSYYRDMGC----LYIIDGMLDMDEVSRSI 187
R+ Y T P+ ++++ C I G+ D D+ R +
Sbjct: 182 AHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIV 225
>gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily.
Members of this family are adenylate kinase, EC 2.7.4.3.
This clade is found only in eukaryotes and includes
human adenylate kinase isozyme 1 (myokinase). Within the
adenylate kinase superfamily, this set appears
specifically closely related to a subfamily of
eukaryotic UMP-CMP kinases (TIGR01359), rather than to
the large clade of bacterial, archaeal, and eukaryotic
adenylate kinase family members in TIGR01351.
Length = 188
Score = 104 bits (261), Expect = 2e-23
Identities = 68/190 (35%), Positives = 94/190 (49%), Gaps = 24/190 (12%)
Query: 2 RIIF-LGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLIS 60
+IIF +G PGSGKGTQ ++ +K LSTGD+LRAEV + GKQ++ MESG L+
Sbjct: 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVP 63
Query: 61 DAIVNQVVCDRI-RLPDCDSGFILDGYPRTVDQAKSLHAFISN------MDCAIDAVIEL 113
V ++ D + GF++DGYPR V Q + I DC+ D
Sbjct: 64 LDTVLDLLKDAMVAALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSED----- 118
Query: 114 RVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYI 173
+M KR+ R +E S R DD KR+E Y K P+ +YY G L
Sbjct: 119 -----TMVKRLLKR------AETSGRVDDNEKTIKKRLETYYKATEPVIAYYETKGKLRK 167
Query: 174 IDGMLDMDEV 183
I+ +D+V
Sbjct: 168 INAEGTVDDV 177
>gnl|CDD|130426 TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family. This subfamily
of the adenylate kinase superfamily contains examples of
UMP-CMP kinase, as well as others proteins with unknown
specificity, some currently designated adenylate kinase.
All known members are eukaryotic.
Length = 183
Score = 99.7 bits (249), Expect = 4e-22
Identities = 57/202 (28%), Positives = 92/202 (45%), Gaps = 31/202 (15%)
Query: 3 IIF-LGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISD 61
++F LG PGSGKGTQ ++ + LS GD+LRAE+ GS E+G LI
Sbjct: 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIK---------SGS-ENGELIES 50
Query: 62 AIVN------QVVCDRIR---LPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAID--AV 110
I N +V ++ D F++DG+PR + +L A+ MD ++ V
Sbjct: 51 MIKNGKIVPSEVTVKLLKNAIQADGSKKFLIDGFPRNEE---NLEAWEKLMDNKVNFKFV 107
Query: 111 IELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGC 170
+ + M KR+ R + S R DD + KR Y + LP+ +Y + G
Sbjct: 108 LFFDCPEEVMIKRLLKR------GQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGK 161
Query: 171 LYIIDGMLDMDEVSRSIDSLLV 192
+ I+ ++EV ++ +
Sbjct: 162 VKEINAEGSVEEVFEDVEKIFA 183
>gnl|CDD|184728 PRK14530, PRK14530, adenylate kinase; Provisional.
Length = 215
Score = 98.3 bits (245), Expect = 1e-21
Identities = 67/212 (31%), Positives = 102/212 (48%), Gaps = 35/212 (16%)
Query: 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAE-----VDRNTLLGKQVKGSMESG 56
RI+ LG PG+GKGTQ+ L+++ V ++TGD LRA D +T M++G
Sbjct: 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTP-GEYMDAG 63
Query: 57 SLISDAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVE 116
L+ DA+VN++V L D D GF+LDGYPR ++QA+ L + +D V+ L V
Sbjct: 64 ELVPDAVVNEIV--EEALSDAD-GFVLDGYPRNLEQAEYLESIT-----DLDVVLYLDVS 115
Query: 117 DASMFKRIQVR---------------------VLEAIASEKSVRSDDKYDVFLKRIENYR 155
+ + R+ R V + E R DD + +R++ +
Sbjct: 116 EEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFE 175
Query: 156 KTILPLSSYYRDMGCLYIIDGMLDMDEVSRSI 187
+ P+ +YRD G L +DG DEV I
Sbjct: 176 ENTEPVIEHYRDQGVLVEVDGEQTPDEVWADI 207
>gnl|CDD|184727 PRK14529, PRK14529, adenylate kinase; Provisional.
Length = 223
Score = 89.8 bits (223), Expect = 4e-19
Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 33/219 (15%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLIS 60
M I+ GP GSGKGTQ + +K ++ + +G + R + T LGK+ K ++ G L+
Sbjct: 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVP 60
Query: 61 DAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASM 120
D I ++ + ++ +G++LDG+PR QA+ L + +D VIE+ +
Sbjct: 61 DDITIPMILETLKQDG-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVA 119
Query: 121 FKRIQVRVL-------------EAI----------ASEKSVRSDDK-YDVFLKRIENYRK 156
RI R L +AI E S R+DD+ + KR + Y
Sbjct: 120 KNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELSTRADDQDEEAINKRHDIYYD 179
Query: 157 T---ILPLSSYYRDM----GCLYI-IDGMLDMDEVSRSI 187
T L + +++D+ YI +DG +DE+ ++
Sbjct: 180 TETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETL 218
>gnl|CDD|177851 PLN02200, PLN02200, adenylate kinase family protein.
Length = 234
Score = 76.5 bits (188), Expect = 4e-15
Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 12/178 (6%)
Query: 6 LGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVN 65
LG PGSGKGTQ ++ + LS GD+LR E+ N+ G + +++ G ++ +
Sbjct: 49 LGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTV 108
Query: 66 QVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQ 125
+++ + D ++ F++DG+PRT + + I + V+ + M KR+
Sbjct: 109 KLIQKEMESSD-NNKFLIDGFPRTEENRIAFERIIG---AEPNVVLFFDCPEEEMVKRVL 164
Query: 126 VRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEV 183
R R DD D KR++ + LP+ YY G LY I+ + +DE+
Sbjct: 165 NR--------NQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEI 214
>gnl|CDD|179240 PRK01184, PRK01184, hypothetical protein; Provisional.
Length = 184
Score = 41.1 bits (97), Expect = 2e-04
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTL 44
I +G PGSGKG + ++++++ +P + GD++R EV + L
Sbjct: 2 KIIGVVGMPGSGKG-EFSKIAREMGIPVVVMGDVIREEVKKRGL 44
>gnl|CDD|179771 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 40.6 bits (96), Expect = 3e-04
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLR 36
M I GPPGSGK T A L++KL + +S G++ R
Sbjct: 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFR 36
>gnl|CDD|162744 TIGR02173, cyt_kin_arch, cytidylate kinase, putative. Proteins
in this family are believed to be cytidylate kinase.
Members of this family are found in the archaea and in
spirochaetes, and differ considerably from the common
bacterial form of cytidylate kinase described by
TIGR00017.
Length = 171
Score = 40.1 bits (94), Expect = 4e-04
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLR 36
M I GPPGSGK T A L++KL++ +S GD+ R
Sbjct: 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFR 36
>gnl|CDD|181235 PRK08118, PRK08118, topology modulation protein; Reviewed.
Length = 167
Score = 36.9 bits (86), Expect = 0.003
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 2 RIIFLGPPGSGKGTQACRLSQKLNVP 27
+II +G GSGK T A +L +KLN+P
Sbjct: 3 KIILIGSGGSGKSTLARQLGEKLNIP 28
>gnl|CDD|184074 PRK13477, PRK13477, bifunctional pantoate ligase/cytidylate kinase;
Provisional.
Length = 512
Score = 33.7 bits (78), Expect = 0.036
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 7 GPPGSGKGTQACRLSQKLNVPQLSTGDMLRA 37
GP G+GK T +++KL + L TG M RA
Sbjct: 291 GPAGAGKSTVTRAVAKKLGLLYLDTGAMYRA 321
>gnl|CDD|129128 TIGR00017, cmk, cytidylate kinase. This family consists of
cytidylate kinase, which catalyzes the phosphorylation
of cytidine 5-monophosphate (dCMP) to cytidine 5
-diphosphate (dCDP) in the presence of ATP or GTP. UMP
and dCMP can also act as acceptors.
Length = 217
Score = 33.6 bits (77), Expect = 0.037
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRA 37
M I GP G+GK T A +++KL L +G M RA
Sbjct: 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRA 39
>gnl|CDD|168472 PRK06217, PRK06217, hypothetical protein; Validated.
Length = 183
Score = 33.1 bits (76), Expect = 0.049
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 14/73 (19%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGD-----------MLRAEVDRNTLLGKQV 49
MRI G GSG T L+++L++P L T D R +R LL + +
Sbjct: 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPPFTTKRPPEERLRLLLEDL 61
Query: 50 KGSME---SGSLI 59
+ SGS +
Sbjct: 62 RPREGWVLSGSAL 74
>gnl|CDD|178800 PRK00023, cmk, cytidylate kinase; Provisional.
Length = 225
Score = 32.8 bits (76), Expect = 0.055
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 7 GPPGSGKGTQACRLSQKLNVPQLSTGDMLRA 37
GP GSGKGT A L++KL L TG M RA
Sbjct: 11 GPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41
>gnl|CDD|172457 PRK13951, PRK13951, bifunctional shikimate
kinase/3-dehydroquinate synthase; Provisional.
Length = 488
Score = 32.2 bits (73), Expect = 0.089
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSME 54
MRI +G GSGK T R+S+ L++ + + E++R G+ V+ E
Sbjct: 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDE----EIERRE--GRSVRRIFE 48
>gnl|CDD|178887 PRK00131, aroK, shikimate kinase; Reviewed.
Length = 175
Score = 31.7 bits (73), Expect = 0.12
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVP 27
I+ +G G+GK T L+++L
Sbjct: 5 PNIVLIGFMGAGKSTIGRLLAKRLGYD 31
>gnl|CDD|180911 PRK07261, PRK07261, topology modulation protein; Provisional.
Length = 171
Score = 31.6 bits (72), Expect = 0.15
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQL 29
M+I +G GSGK T A +LSQ N P L
Sbjct: 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVL 29
>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 694
Score = 31.3 bits (71), Expect = 0.19
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 7 GPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVD 40
GP GSGK T +L Q+L PQ G +L VD
Sbjct: 490 GPSGSGKSTLT-KLLQRLYTPQH--GQVLVDGVD 520
>gnl|CDD|181925 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der;
Reviewed.
Length = 712
Score = 30.9 bits (70), Expect = 0.20
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 7 GPPGSGKGTQACRLSQKLNVPQLSTGDMLRA 37
GP G GK + + L+Q L L TG M RA
Sbjct: 8 GPAGVGKSSVSRALAQYLGYAYLDTGAMYRA 38
>gnl|CDD|184251 PRK13695, PRK13695, putative NTPase; Provisional.
Length = 174
Score = 30.7 bits (70), Expect = 0.28
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEV-DRNTLLG 46
M+I GPPG GK T ++++ L G EV + +G
Sbjct: 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFYTEEVREGGKRIG 47
>gnl|CDD|181743 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 30.3 bits (69), Expect = 0.33
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 2 RIIFL-GPPGSGKGTQACRLSQKLN 25
I+ + GPPG+GK T A L L
Sbjct: 34 TIVGIAGPPGAGKSTLAEFLEALLQ 58
>gnl|CDD|184430 PRK13975, PRK13975, thymidylate kinase; Provisional.
Length = 196
Score = 30.1 bits (68), Expect = 0.38
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 16/85 (18%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVP---QLSTGDMLRAEVDRNTLLGKQVKGS----- 52
I+F G GSGK TQA L++KLN + + G + ++ R L G +
Sbjct: 3 KFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKI--GKLIREILSGSKCDKETLALL 60
Query: 53 -----MESGSLIS-DAIVNQVVCDR 71
+E I D VVCDR
Sbjct: 61 FAADRVEHVKEIEEDLKKRDVVCDR 85
>gnl|CDD|149480 pfam08433, KTI12, Chromatin associated protein KTI12. This is a
family of chromatin associated proteins which interact
with the Elongator complex, a component of the
elongating form of RNA polymerase II. The Elongator
complex has histone acetyltransferase activity.
Length = 266
Score = 29.9 bits (68), Expect = 0.47
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 3 IIFLGPPGSGKGTQACRLSQKL 24
II G P SGK T+A L++ L
Sbjct: 2 IILTGLPSSGKSTRAKELAKYL 23
>gnl|CDD|129465 TIGR00368, TIGR00368, Mg chelatase-related protein. The N-terminal
end matches very strongly a pfam Mg_chelatase domain.
Length = 499
Score = 29.4 bits (66), Expect = 0.61
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLS 30
++ GPPGSGK A RL L P L+
Sbjct: 214 LLLFGPPGSGKTMLASRLQGIL--PPLT 239
>gnl|CDD|166511 PLN02870, PLN02870, Probable galacturonosyltransferase.
Length = 533
Score = 29.1 bits (65), Expect = 0.76
Identities = 28/112 (25%), Positives = 40/112 (35%), Gaps = 28/112 (25%)
Query: 29 LSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCDSGFILDGYPR 88
LST ++L A V V S SL + IV V+ D+ S F L+
Sbjct: 211 LSTDNILAASV---------VVSSTVQSSLKPEKIVFHVITDKKTYAGMHSWFALNSVSP 261
Query: 89 TVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRS 140
+ + K +H F R V VLEA+ S +R+
Sbjct: 262 AIVEVKGVHQF-------------------DWLTRENVPVLEAVESHNGIRN 294
>gnl|CDD|168313 PRK05957, PRK05957, aspartate aminotransferase; Provisional.
Length = 389
Score = 29.3 bits (66), Expect = 0.77
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 138 VRSDDKYDVFLKR-IENYRKTILPLSSYYRDMGC-LYIIDGMLDMDEVSRSIDSL 190
V +D +K+ I YR ++P +++ GC L I G L I+ L
Sbjct: 325 VNTDLNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERL 379
>gnl|CDD|161849 TIGR00382, clpX, endopeptidase Clp ATP-binding regulatory subunit
(clpX). A member of the ATP-dependent proteases, ClpX
has ATP-dependent chaperone activity and is required for
specific ATP-dependent proteolytic activities expressed
by ClpPX. The gene is also found to be involved in
stress tolerance in Bacillus subtilis and is essential
for the efficient acquisition of genes specifying type
IA and IB restriction.
Length = 413
Score = 28.6 bits (64), Expect = 1.0
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNVP 27
I+ +GP GSGK A L++ LNVP
Sbjct: 119 ILLIGPTGSGKTLLAQTLARILNVP 143
>gnl|CDD|183342 PRK11860, PRK11860, bifunctional 3-phosphoshikimate
1-carboxyvinyltransferase/cytidine monophosphate kinase;
Provisional.
Length = 661
Score = 28.5 bits (64), Expect = 1.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 7 GPPGSGKGTQACRLSQKLNVPQLSTGDMLR 36
GP SGKGT A R+++ L L +G + R
Sbjct: 449 GPTASGKGTVAARVAEALGYHYLDSGALYR 478
>gnl|CDD|118315 pfam09784, L31, Mitochondrial ribosomal protein L31. This is a
family of mitochondrial ribosomal proteins. L31 is
essential for mitochondrial function in yeast.
Length = 103
Score = 28.5 bits (64), Expect = 1.2
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 106 AIDAVIELRVEDASMFKRIQ-----VRVLEAIASEKSVRSDDKYDVFLKRIENYRKTI 158
A+D VI+ + ++ R + R+L E+ + DKY F K+ + YRK I
Sbjct: 30 AVDDVIK--TLNEALQLRGKSRKSLDRLLAKFPPEEEMSPKDKYTTFDKKSKGYRKGI 85
>gnl|CDD|182120 PRK09862, PRK09862, putative ATP-dependent protease; Provisional.
Length = 506
Score = 28.0 bits (62), Expect = 1.8
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRA 37
++ +GPPG+GK A R++ L P LS + L +
Sbjct: 213 LLLIGPPGTGKTMLASRINGLL--PDLSNEEALES 245
>gnl|CDD|132613 TIGR03574, selen_PSTK, L-seryl-tRNA(Sec) kinase, archaeal.
Members of this protein are L-seryl-tRNA(Sec) kinase.
This enzyme is part of a two-step pathway in Eukaryota
and Archaea for performing selenocysteine biosynthesis
by changing serine misacylated on selenocysteine-tRNA
to selenocysteine. This enzyme performs the first step,
phosphorylation of the OH group of the serine side
chain. This family represents archaeal proteins with
this activity.
Length = 249
Score = 27.8 bits (62), Expect = 1.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 3 IIFLGPPGSGKGTQACRLSQKL 24
II G PG GK T + L++KL
Sbjct: 2 IILTGLPGVGKSTFSKELAKKL 23
>gnl|CDD|183985 PRK13341, PRK13341, recombination factor protein RarA/unknown
domain fusion protein; Reviewed.
Length = 725
Score = 27.7 bits (62), Expect = 2.1
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 4 IFLGPPGSGKGTQA 17
I GPPG GK T A
Sbjct: 56 ILYGPPGVGKTTLA 69
>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only
detects a fraction of this vast family. The poorly
conserved N-terminal helix is missing from the
alignment.
Length = 148
Score = 27.7 bits (61), Expect = 2.1
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 2 RIIFLGPPGSGKGTQACRLSQKLNVPQ-----LSTGDMLRAEVDRNTLLGKQVKGSMESG 56
I+ +GPPGSGK T A L+++L P + D+L +D+ L+ K + SG
Sbjct: 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSG 63
>gnl|CDD|163057 TIGR02881, spore_V_K, stage V sporulation protein K. Members of
this protein family are the stage V sporulation protein
K (SpoVK), a close homolog of the Rubisco expression
protein CbbX (TIGR02880) and a members of the ATPase
family associated with various cellular activities
(pfam00004). Members are strictly limited to bacterial
endospore-forming species, but are not universal in
this group and are missing from the Clostridium group.
Length = 261
Score = 27.8 bits (62), Expect = 2.3
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 7/47 (14%)
Query: 3 IIFLGPPGSGKGTQA---CRLSQKLNVPQLSTGDMLRAEVDRNTLLG 46
+IF G PG+GK T A +L +++NV LS G ++ EV+R L+G
Sbjct: 45 MIFKGNPGTGKTTVARILGKLFKEMNV--LSKGHLI--EVERADLVG 87
>gnl|CDD|129547 TIGR00455, apsK, adenylylsulfate kinase (apsK). Important
residue (active site in E.coli) is residue 100 of the
seed alignment.
Length = 184
Score = 27.4 bits (61), Expect = 2.4
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLST----GDMLRAEVDRN 42
I G GSGK T A L +KL GD +R ++++
Sbjct: 21 IWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKD 64
>gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol
utilisation. Members of this family function in
ethanolamine and propanediol degradation pathways,
however the exact roles of these proteins is poorly
understood.
Length = 143
Score = 27.6 bits (62), Expect = 2.5
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 2 RIIFLGPPGSGKGTQACRLSQKLN 25
+I+ +G G GK T L+Q LN
Sbjct: 3 KIMLIGRSGCGKTT----LTQALN 22
>gnl|CDD|183986 PRK13342, PRK13342, recombination factor protein RarA; Reviewed.
Length = 413
Score = 27.4 bits (62), Expect = 2.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 3 IIFLGPPGSGKGTQA 17
+I GPPG+GK T A
Sbjct: 39 MILWGPPGTGKTTLA 53
>gnl|CDD|181536 PRK08674, PRK08674, bifunctional phosphoglucose/phosphomannose
isomerase; Validated.
Length = 337
Score = 27.3 bits (61), Expect = 2.9
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 2 RIIFLGPPGSGKGTQACR--LSQKLNVP-QLSTGDMLRAEVDRNTLL 45
I+ G GSG G R L +L VP ++ L A VD TL+
Sbjct: 36 NIVISGMGGSGIGGDLLRILLFDELKVPVFVNRDYTLPAFVDEKTLV 82
>gnl|CDD|169667 PRK09112, PRK09112, DNA polymerase III subunit delta'; Validated.
Length = 351
Score = 27.3 bits (61), Expect = 3.1
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 3 IIFLGPPGSGKGTQACRLSQK-LNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSL 58
++F GP G GK T A L+ L+ P + A+ D + + +Q+ L
Sbjct: 48 LLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLL 104
>gnl|CDD|184934 PRK14970, PRK14970, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 367
Score = 26.8 bits (59), Expect = 3.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLST 31
++F GP G GK T A L++K+N P
Sbjct: 42 LLFCGPRGVGKTTCARILARKINQPGYDD 70
>gnl|CDD|130546 TIGR01481, ccpA, catabolite control protein A. Catabolite control
protein A is a LacI family global transcriptional
regulator found in Gram-positive bacteria. CcpA is
involved in repressing carbohydrate utilization genes
[ex: alpha-amylase (amyE), acetyl-coenzyme A synthase
(acsA)] and in activating genes involved in transporting
excess carbon from the cell [ex: acetate kinase (ackA),
alpha-acetolactate synthase (alsS)]. Additionally,
disruption of CcpA in Bacillus megaterium,
Staphylococcus xylosus, Lactobacillus casei and
Lactocacillus pentosus also decreases growth rate, which
suggests CcpA is involved in the regulation of other
metabolic pathways.
Length = 329
Score = 26.7 bits (59), Expect = 4.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 42 NTLLGKQVKGSMESGSLISDAI 63
NTLL KQV G + G I++ +
Sbjct: 109 NTLLSKQVDGIIFMGGTITEKL 130
>gnl|CDD|161743 TIGR00174, miaA, tRNA isopentenyltransferase (miaA). Catalyzes
the first step in the modification of an adenosine near
the anticodon to 2-methylthio-N6-isopentyladenosine.
Length = 287
Score = 26.6 bits (59), Expect = 4.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDML 35
I +GP GK A +L++KLN +S M
Sbjct: 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQ 34
>gnl|CDD|105560 PRK12339, PRK12339, 2-phosphoglycerate kinase; Provisional.
Length = 197
Score = 26.3 bits (58), Expect = 5.0
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 2 RIIFL-GPPGSGKGTQACRLSQKLNVPQLSTGD----MLRAEVDRNTLLGKQVKGSMES- 55
I F+ G PG GK + + +++ + + +GD LR VD +L K V + E
Sbjct: 4 TIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFY 63
Query: 56 GSLISDAIV 64
GS+ + IV
Sbjct: 64 GSMTDENIV 72
>gnl|CDD|180682 PRK06761, PRK06761, hypothetical protein; Provisional.
Length = 282
Score = 26.3 bits (58), Expect = 5.0
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNV 26
II G PG GK T A L+ L+
Sbjct: 6 IIIEGLPGFGKSTTAKMLNDILSQ 29
>gnl|CDD|116338 pfam07724, AAA_2, AAA domain (Cdc48 subfamily). This Pfam entry
includes some of the AAA proteins not detected by the
pfam00004 model.
Length = 168
Score = 26.4 bits (59), Expect = 5.0
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAE 38
+FLGP G GK A L++ L ++R +
Sbjct: 6 FLFLGPTGVGKTELAKALAELLFG---DERALIRID 38
>gnl|CDD|180607 PRK06526, PRK06526, transposase; Provisional.
Length = 254
Score = 26.4 bits (58), Expect = 5.2
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 7/24 (29%)
Query: 3 IIFLGPPGSGK-------GTQACR 19
++FLGPPG+GK G +AC+
Sbjct: 101 VVFLGPPGTGKTHLAIGLGIRACQ 124
>gnl|CDD|179660 PRK03839, PRK03839, putative kinase; Provisional.
Length = 180
Score = 26.2 bits (58), Expect = 5.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNV 26
M I G PG GK T + L++KL
Sbjct: 1 MIIAITGTPGVGKTTVSKLLAEKLGY 26
>gnl|CDD|183703 PRK12724, PRK12724, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 432
Score = 26.5 bits (58), Expect = 5.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 3 IIFLGPPGSGKGTQACRLSQK 23
+ F+GP GSGK T +L+ K
Sbjct: 226 VFFVGPTGSGKTTSIAKLAAK 246
>gnl|CDD|184920 PRK14956, PRK14956, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 484
Score = 26.4 bits (58), Expect = 5.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 4 IFLGPPGSGKGTQACRLSQKLN 25
IF GP G GK T A L+++LN
Sbjct: 44 IFFGPRGVGKTTIARILAKRLN 65
>gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 26.0 bits (57), Expect = 6.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 4 IFLGPPGSGKGTQACRLSQKLNVPQLSTGDM 34
+ LGPP SGK T L+ KL+ +G++
Sbjct: 195 LLLGPPSSGKTTLLLALAGKLDPSLKVSGEI 225
>gnl|CDD|179921 PRK05057, aroK, shikimate kinase I; Reviewed.
Length = 172
Score = 26.2 bits (58), Expect = 6.4
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 2 RIIFL-GPPGSGKGTQACRLSQKLN 25
R IFL GP G+GK T +L+Q+LN
Sbjct: 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29
>gnl|CDD|149019 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This
Pfam entry includes some of the AAA proteins not
detected by the pfam00004 model.
Length = 139
Score = 26.1 bits (58), Expect = 6.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLN 25
++ +GPPG+GK A RL+ L+
Sbjct: 2 VLLVGPPGTGKSELAERLAAALS 24
>gnl|CDD|184926 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 25.9 bits (57), Expect = 6.9
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 4 IFLGPPGSGKGTQACRLSQKLN 25
IF GP G+GK T A L++ LN
Sbjct: 40 IFAGPRGTGKTTVARILAKSLN 61
>gnl|CDD|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal
protein S1; Provisional.
Length = 863
Score = 25.8 bits (56), Expect = 7.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 7 GPPGSGKGTQACRLSQKLNVPQLSTGDMLRA 37
GP GSGK + L+ +L L+TG RA
Sbjct: 41 GPAGSGKSSVCRLLASRLGAQCLNTGSFYRA 71
>gnl|CDD|184917 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 25.9 bits (57), Expect = 7.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 4 IFLGPPGSGKGTQACRLSQKLNVPQLSTGD 33
IF GP G+GK T A L++ LN G+
Sbjct: 42 IFAGPRGTGKTTIARILAKVLNCLNPQEGE 71
>gnl|CDD|132443 TIGR03402, FeS_nifS, cysteine desulfurase NifS. Members of this
protein family are NifS, one of several related families
of cysteine desulfurase involved in iron-sulfur (FeS)
cluster biosynthesis. NifS is part of the NIF system,
usually associated with other nif genes involved in
nitrogenase expression and nitrogen fixation. The
protein family is given a fairly broad interpretation
here. It includes a clade nearly always found in
extended nitrogen fixation genomic regions, plus a
second clade more closely related to the first than to
IscS and also part of NifS-like/NifU-like systems. This
model does not extend to a more distantly clade found in
the epsilon proteobacteria such as Helicobacter pylori,
also named NifS in the literature, built instead in
TIGR03403.
Length = 379
Score = 25.7 bits (57), Expect = 8.1
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 14/50 (28%)
Query: 147 FLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSI--DSLLVSV 194
L++ + Y+ T LP+ G LD++E+ +I D+ LVSV
Sbjct: 105 HLEK-QGYKVTYLPVDEE-----------GRLDLEELRAAITDDTALVSV 142
>gnl|CDD|162991 TIGR02734, crtI_fam, phytoene desaturase. Phytoene is converted to
lycopene by desaturation at four (two symmetrical pairs
of) sites. This is achieved by two enzymes (crtP and
crtQ) in cyanobacteria (Gloeobacter being an exception)
and plants, but by a single enzyme in most other
bacteria and in fungi. This single enzyme is called the
bacterial-type phytoene desaturase, or CrtI. Most
members of this family, part of the larger Pfam family
pfam01593, which also contains amino oxidases, are CrtI
itself; it is likely that all members act on either
phytoene or on related compounds such as
dehydrosqualene, for carotenoid biosynthesis.
Length = 502
Score = 25.7 bits (57), Expect = 8.1
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 24 LNVPQLSTGDMLRAEVDRNTLLGKQVKGSMES--GSLISDAIVNQV 67
VP LS D+LRA D LL S+ S SD + Q
Sbjct: 137 GYVPFLSPRDLLRA--DLPQLLALLAWRSLYSKVARFFSDERLRQA 180
>gnl|CDD|178596 PLN03025, PLN03025, replication factor C subunit; Provisional.
Length = 319
Score = 25.8 bits (57), Expect = 8.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 3 IIFLGPPGSGKGTQACRLSQKL 24
+I GPPG+GK T L+ +L
Sbjct: 37 LILSGPPGTGKTTSILALAHEL 58
>gnl|CDD|180029 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX;
Provisional.
Length = 412
Score = 25.9 bits (58), Expect = 8.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLNVP 27
I+ +GP GSGK A L++ L+VP
Sbjct: 111 ILLIGPTGSGKTLLAQTLARILDVP 135
>gnl|CDD|177750 PLN00146, PLN00146, 40S ribosomal protein S15a; Provisional.
Length = 130
Score = 25.7 bits (57), Expect = 8.5
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
Query: 143 KYDVFLKRIENYRKTILPLSSYYRDMGCLYII----DGMLDMDEVSR 185
++DV +K IE + +LP R G YI+ G++D +E R
Sbjct: 78 RFDVKVKEIEAWTARLLP----SRQFG--YIVLTTSAGIMDHEEARR 118
>gnl|CDD|184315 PRK13768, PRK13768, GTPase; Provisional.
Length = 253
Score = 25.6 bits (57), Expect = 8.8
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 1 MRIIFLGPPGSGKGT 15
+ FLG GSGK T
Sbjct: 3 YIVFFLGTAGSGKTT 17
>gnl|CDD|131580 TIGR02528, EutP, ethanolamine utilization protein, EutP. This
protein is found within operons which code for
polyhedral organelles containing the enzyme
ethanolamine ammonia lyase. The function of this gene
is unknown, although the presence of an N-terminal
GxxGxGK motif implies a GTP-binding site.
Length = 142
Score = 25.5 bits (56), Expect = 9.0
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 2 RIIFLGPPGSGKGTQACRLSQKLN 25
RI+F+G G GK T L+Q L
Sbjct: 2 RIMFIGSVGCGKTT----LTQALQ 21
>gnl|CDD|184937 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 25.7 bits (57), Expect = 9.4
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 3 IIFLGPPGSGKGTQACRLSQKLN----VPQLSTGDMLRA 37
I+F+G G+GK T +L+ L ++ GD RA
Sbjct: 143 IVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA 181
>gnl|CDD|181294 PRK08211, PRK08211, putative dehydratase; Provisional.
Length = 655
Score = 25.4 bits (56), Expect = 9.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 28 QLSTGDMLRAEVDRNTLLG 46
+L GD++ +DR TL G
Sbjct: 560 KLRDGDLIEIIIDRRTLEG 578
>gnl|CDD|131926 TIGR02880, cbbX_cfxQ, probable Rubsico expression protein CbbX.
Proteins in this family are now designated CbbX. Some
previously were CfxQ (carbon fixation Q). Its gene is
often found immmediately downstream of the Rubisco
large and small chain genes, and it is suggested to be
necessary for Rubisco expression. CbbX has been shown
to be necessary for photoautotrophic growth. This
protein belongs to the larger family of pfam00004,
ATPase family Associated with various cellular
Activities. Within that larger family, members of this
family are most closely related to the stage V
sporulation protein K, or SpoVK, in endospore-forming
bacteria such as Bacillus subtilis.
Length = 284
Score = 25.6 bits (56), Expect = 9.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 5 FLGPPGSGKGTQACRLSQKL 24
F G PG+GK T A R++Q L
Sbjct: 63 FTGNPGTGKTTVALRMAQIL 82
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.137 0.386
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,170,149
Number of extensions: 192269
Number of successful extensions: 677
Number of sequences better than 10.0: 1
Number of HSP's gapped: 649
Number of HSP's successfully gapped: 93
Length of query: 201
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 112
Effective length of database: 4,071,361
Effective search space: 455992432
Effective search space used: 455992432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.1 bits)