RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780240|ref|YP_003064653.1| adenylate kinase [Candidatus Liberibacter asiaticus str. psy62] (201 letters) >gnl|CDD|178957 PRK00279, adk, adenylate kinase; Reviewed. Length = 215 Score = 227 bits (582), Expect = 1e-60 Identities = 84/212 (39%), Positives = 117/212 (55%), Gaps = 21/212 (9%) Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLIS 60 MR+I LGPPG+GKGTQA +++K +P +STGDMLRA V T LGK+ K M++G L+ Sbjct: 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVP 60 Query: 61 DAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASM 120 D IV +V +R+ PDC +GF+LDG+PRT+ QA++L + + +DAVIE+ V D + Sbjct: 61 DEIVIGLVKERLAQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEEL 120 Query: 121 FKRIQVR---------------------VLEAIASEKSVRSDDKYDVFLKRIENYRKTIL 159 +R+ R + E R+DD + KR+E Y K Sbjct: 121 VERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTA 180 Query: 160 PLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLL 191 PL YY+ G L IDG +DEV I L Sbjct: 181 PLIDYYKKKGKLKKIDGTGSIDEVFADILKAL 212 >gnl|CDD|162313 TIGR01351, adk, adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason. Length = 210 Score = 202 bits (517), Expect = 4e-53 Identities = 87/212 (41%), Positives = 120/212 (56%), Gaps = 25/212 (11%) Query: 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISD 61 R++ LGPPGSGKGTQA R+++K +P +STGD+LRAE+ T LGK+ K ME G L+ D Sbjct: 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPD 60 Query: 62 AIVNQVVCDRIR-LPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASM 120 IVNQ+V +R+ D ++GFILDG+PRT+ QA++L A + IDAVIEL V D + Sbjct: 61 EIVNQLVKERLTQNQDNENGFILDGFPRTLSQAEALDALL---KEKIDAVIELDVPDEEL 117 Query: 121 FKRIQVRVL---------------------EAIASEKSVRSDDKYDVFLKRIENYRKTIL 159 +R+ R + + R DD +V KR+E Y++ Sbjct: 118 VERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDTEEVVKKRLEVYKEQTE 177 Query: 160 PLSSYYRDMGCLYIIDGMLDMDEVSRSIDSLL 191 PL YY+ G L IDG +DEV + I L Sbjct: 178 PLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209 >gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional. Length = 333 Score = 199 bits (508), Expect = 4e-52 Identities = 92/196 (46%), Positives = 127/196 (64%) Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLIS 60 MR+I LGPPG+GKGTQA RL Q+ + QLSTGDMLRA V T +G + K M SG L+ Sbjct: 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVP 60 Query: 61 DAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASM 120 D +V ++ DRI PD +GFILDG+PRTV QA++L A + + +DAV+ELRV + ++ Sbjct: 61 DEVVVGIISDRIEQPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGAL 120 Query: 121 FKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDM 180 R++ RV E A + VR+DD +V KR+ +YR PL YY + L +DGM+ + Sbjct: 121 LARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTI 180 Query: 181 DEVSRSIDSLLVSVRK 196 DEV+R I +L +V Sbjct: 181 DEVTREIGRVLAAVGA 196 >gnl|CDD|184729 PRK14532, PRK14532, adenylate kinase; Provisional. Length = 188 Score = 168 bits (428), Expect = 7e-43 Identities = 79/191 (41%), Positives = 116/191 (60%), Gaps = 6/191 (3%) Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLIS 60 M +I GPP +GKGTQA RL ++ + QLSTGDMLRA + + LG++VKG M+ G L+S Sbjct: 1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVS 60 Query: 61 DAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASM 120 D IV ++ +R+ + G I DG+PRTV QA++L +++ ID VI L+V+D ++ Sbjct: 61 DEIVIALIEERLPEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEAL 120 Query: 121 FKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDM 180 +RI R E+ R DD +VF+ R++ Y PL YY G L +DGM + Sbjct: 121 IERIVKRF------EEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSI 174 Query: 181 DEVSRSIDSLL 191 + V+ SID+ L Sbjct: 175 EAVAASIDAAL 185 >gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional. Length = 186 Score = 164 bits (417), Expect = 1e-41 Identities = 78/186 (41%), Positives = 115/186 (61%), Gaps = 6/186 (3%) Query: 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISD 61 IIF+GPPG+GKGTQA L ++L++PQ+STGD+LR V T +G + K M++G L+ D Sbjct: 3 NIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPD 62 Query: 62 AIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMF 121 ++V ++ DRIR DC +GF+LDG+PRTV+QA +L A + N +ID I L V D + Sbjct: 63 SVVIGIIKDRIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELL 122 Query: 122 KRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMD 181 KR+ R +E R+DD R++NY K LPL +Y L ++G+ ++ Sbjct: 123 KRLLGR------AEIEGRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLE 176 Query: 182 EVSRSI 187 EV+ I Sbjct: 177 EVTSLI 182 >gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional. Length = 184 Score = 162 bits (411), Expect = 6e-41 Identities = 73/190 (38%), Positives = 111/190 (58%), Gaps = 10/190 (5%) Query: 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISD 61 R+IFLGPPG+GKGTQA L++ L++P +STGD+LR + T LG + +G M+ G L+ D Sbjct: 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPD 62 Query: 62 AIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMF 121 +V +V +R++ PD +G+ILDG+PR V QA L + + + + V+ L V D + Sbjct: 63 QLVLDLVQERLQQPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVV 122 Query: 122 KRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMD 181 +R+ R R DD +V +R+E YR+ PL YYRD L IDG ++ Sbjct: 123 ERLLAR----------GRKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVE 172 Query: 182 EVSRSIDSLL 191 V+ + + L Sbjct: 173 AVTTELKAAL 182 >gnl|CDD|184726 PRK14527, PRK14527, adenylate kinase; Provisional. Length = 191 Score = 144 bits (365), Expect = 1e-35 Identities = 73/189 (38%), Positives = 107/189 (56%), Gaps = 7/189 (3%) Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDA 62 +IFLGPPG+GKGTQA RL+Q+L + +LSTGD+LR V R T LG++ K ME+G L+ D Sbjct: 9 VIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDE 68 Query: 63 IVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFK 122 ++ ++ D + + I DG+PRT+ QA++L + + + AV+ L V D + + Sbjct: 69 LILALIRDELAGME-PVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIR 127 Query: 123 RIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDE 182 RI R + RSDD + +R + YR+ PL YY G L +DG+ DE Sbjct: 128 RIVERARQE------GRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDE 181 Query: 183 VSRSIDSLL 191 V I L Sbjct: 182 VYARILKAL 190 >gnl|CDD|172997 PRK14531, PRK14531, adenylate kinase; Provisional. Length = 183 Score = 139 bits (351), Expect = 6e-34 Identities = 69/190 (36%), Positives = 112/190 (58%), Gaps = 11/190 (5%) Query: 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISD 61 R++FLGPPG+GKGTQA RL + LSTGD+LR+EV + LG++ + M G L+SD Sbjct: 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSD 63 Query: 62 AIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMF 121 A+V +V +++ + G++LDG+PRTV QA++L + + I+AV+ L ++DA + Sbjct: 64 ALVLAIVESQLKALNSG-GWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLI 122 Query: 122 KRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMD 181 +R+ R R+DD V R+E YR+ PL +YR G L ++ ++ Sbjct: 123 ERLLAR----------GRADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIE 172 Query: 182 EVSRSIDSLL 191 ++ I+ +L Sbjct: 173 AITERIEKVL 182 >gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional. Length = 211 Score = 118 bits (297), Expect = 1e-27 Identities = 70/208 (33%), Positives = 110/208 (52%), Gaps = 26/208 (12%) Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLIS 60 M+++FLGPPGSGKGT A LS +LN +STGD+ R + +T LGK++K +E+G L+ Sbjct: 1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVP 60 Query: 61 DAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASM 120 D+I ++V D+I + FILDG+PR ++QAK+L F+ N+ +I +++ + Sbjct: 61 DSITIKIVEDKINTIKNNDNFILDGFPRNINQAKALDKFLPNIK-----IINFLIDEELL 115 Query: 121 FKRIQVR-----------VLEAIASEKSV----------RSDDKYDVFLKRIENYRKTIL 159 KR+ R + EK + R DDK + R++ Y+ Sbjct: 116 IKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDKEESLKTRLQEYKLQTK 175 Query: 160 PLSSYYRDMGCLYIIDGMLDMDEVSRSI 187 PL +Y L ID D+DEV + + Sbjct: 176 PLIEFYSKCNRLNNIDASKDIDEVKKKL 203 >gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase. Length = 244 Score = 117 bits (295), Expect = 2e-27 Identities = 66/191 (34%), Positives = 101/191 (52%), Gaps = 21/191 (10%) Query: 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISD 61 R+I +GPPGSGKGTQ+ + + + L+TGDMLRA V T LG + K +M+ G L+SD Sbjct: 33 RLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 92 Query: 62 AIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMF 121 +V ++ + ++ P C GFILDG+PRTV QA+ L ++ ID V+ ++DA + Sbjct: 93 DLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILE 152 Query: 122 KRI--------------------QVRVLEAIASEKSV-RSDDKYDVFLKRIENYRKTILP 160 +RI +V ++ + E + R DD V R+E + K P Sbjct: 153 ERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEP 212 Query: 161 LSSYYRDMGCL 171 + YY G + Sbjct: 213 VIDYYAKKGVV 223 >gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase. Length = 505 Score = 111 bits (279), Expect = 1e-25 Identities = 71/209 (33%), Positives = 97/209 (46%), Gaps = 24/209 (11%) Query: 7 GPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQ 66 G P SGKGTQ + K + +STGD+LRAEV T +GK+ K M SG L+ D IV Sbjct: 4 GAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIA 63 Query: 67 VVCDRIRLPD-CDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQ 125 +V R+ D + G++LDGYPR+ QA+SL + D I L V D + R Sbjct: 64 MVTGRLSREDAKEKGWLLDGYPRSFAQAQSLEK----LKIRPDIFILLDVPDEILIDRCV 119 Query: 126 VRVL-----------------EAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDM 168 R L E I + R DD + R++ Y+K + S Y D Sbjct: 120 GRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVKARLQIYKKNAEAILSTYSD- 178 Query: 169 GCLYIIDGMLDMDEVSRSIDSLLVSVRKK 197 + IDG + V I SLL ++K Sbjct: 179 -IMVKIDGNRPKEVVFEEISSLLSQIQKD 206 >gnl|CDD|178078 PLN02459, PLN02459, probable adenylate kinase. Length = 261 Score = 107 bits (268), Expect = 2e-24 Identities = 65/202 (32%), Positives = 98/202 (48%), Gaps = 39/202 (19%) Query: 4 IFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAI 63 +FLG PG GKGT A RLS+ L VP ++TGD++R E+ + LG Q+K + G L+ D I Sbjct: 33 VFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEI 92 Query: 64 VNQVVCDRIR--LPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRV-EDASM 120 + ++ R+ + +SGFILDG+PRTV QA+ L ID V+ L++ E+ + Sbjct: 93 IFSLLSKRLEAGEEEGESGFILDGFPRTVRQAEILEGVTD-----IDLVVNLKLREEVLV 147 Query: 121 FK----------------------------RIQVRVLEA---IASEKSVRSDDKYDVFLK 149 K I + L AS+ R+DD +V Sbjct: 148 EKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLPPPECASKLITRADDTEEVVKA 207 Query: 150 RIENYRKTILPLSSYYRDMGCL 171 R+ Y++ P+ +YR G L Sbjct: 208 RLRVYKEESQPVEDFYRKRGKL 229 >gnl|CDD|173382 PTZ00088, PTZ00088, adenylate kinase 1; Provisional. Length = 229 Score = 104 bits (262), Expect = 1e-23 Identities = 61/224 (27%), Positives = 101/224 (45%), Gaps = 42/224 (18%) Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLIS 60 ++I+ G PG GKGT A LS+K N+ ++ G++LR E+ T +GK+++ + SG+L+ Sbjct: 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVP 66 Query: 61 DAIVNQVVCDRIR--LPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDA 118 D +V +V D I DC GFILDG+PR + Q K L + ID + + + Sbjct: 67 DNLVIAIVKDEIAKVTDDCFKGFILDGFPRNLKQCKELGKITN-----IDLFVNIYLPRN 121 Query: 119 SMFKRIQVR------------------------VLEAIASEKS-------VRSDDKYDVF 147 + K++ R +L E RSDD ++ Sbjct: 122 ILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEGCKGNPKLQKRSDDTEEIV 181 Query: 148 LKRIENYRKTILPLSSYYRDMGC----LYIIDGMLDMDEVSRSI 187 R+ Y T P+ ++++ C I G+ D D+ R + Sbjct: 182 AHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIV 225 >gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. Length = 188 Score = 104 bits (261), Expect = 2e-23 Identities = 68/190 (35%), Positives = 94/190 (49%), Gaps = 24/190 (12%) Query: 2 RIIF-LGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLIS 60 +IIF +G PGSGKGTQ ++ +K LSTGD+LRAEV + GKQ++ MESG L+ Sbjct: 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVP 63 Query: 61 DAIVNQVVCDRI-RLPDCDSGFILDGYPRTVDQAKSLHAFISN------MDCAIDAVIEL 113 V ++ D + GF++DGYPR V Q + I DC+ D Sbjct: 64 LDTVLDLLKDAMVAALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSED----- 118 Query: 114 RVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYI 173 +M KR+ R +E S R DD KR+E Y K P+ +YY G L Sbjct: 119 -----TMVKRLLKR------AETSGRVDDNEKTIKKRLETYYKATEPVIAYYETKGKLRK 167 Query: 174 IDGMLDMDEV 183 I+ +D+V Sbjct: 168 INAEGTVDDV 177 >gnl|CDD|130426 TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. Length = 183 Score = 99.7 bits (249), Expect = 4e-22 Identities = 57/202 (28%), Positives = 92/202 (45%), Gaps = 31/202 (15%) Query: 3 IIF-LGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISD 61 ++F LG PGSGKGTQ ++ + LS GD+LRAE+ GS E+G LI Sbjct: 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIK---------SGS-ENGELIES 50 Query: 62 AIVN------QVVCDRIR---LPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAID--AV 110 I N +V ++ D F++DG+PR + +L A+ MD ++ V Sbjct: 51 MIKNGKIVPSEVTVKLLKNAIQADGSKKFLIDGFPRNEE---NLEAWEKLMDNKVNFKFV 107 Query: 111 IELRVEDASMFKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGC 170 + + M KR+ R + S R DD + KR Y + LP+ +Y + G Sbjct: 108 LFFDCPEEVMIKRLLKR------GQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGK 161 Query: 171 LYIIDGMLDMDEVSRSIDSLLV 192 + I+ ++EV ++ + Sbjct: 162 VKEINAEGSVEEVFEDVEKIFA 183 >gnl|CDD|184728 PRK14530, PRK14530, adenylate kinase; Provisional. Length = 215 Score = 98.3 bits (245), Expect = 1e-21 Identities = 67/212 (31%), Positives = 102/212 (48%), Gaps = 35/212 (16%) Query: 2 RIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAE-----VDRNTLLGKQVKGSMESG 56 RI+ LG PG+GKGTQ+ L+++ V ++TGD LRA D +T M++G Sbjct: 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTP-GEYMDAG 63 Query: 57 SLISDAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVE 116 L+ DA+VN++V L D D GF+LDGYPR ++QA+ L + +D V+ L V Sbjct: 64 ELVPDAVVNEIV--EEALSDAD-GFVLDGYPRNLEQAEYLESIT-----DLDVVLYLDVS 115 Query: 117 DASMFKRIQVR---------------------VLEAIASEKSVRSDDKYDVFLKRIENYR 155 + + R+ R V + E R DD + +R++ + Sbjct: 116 EEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFE 175 Query: 156 KTILPLSSYYRDMGCLYIIDGMLDMDEVSRSI 187 + P+ +YRD G L +DG DEV I Sbjct: 176 ENTEPVIEHYRDQGVLVEVDGEQTPDEVWADI 207 >gnl|CDD|184727 PRK14529, PRK14529, adenylate kinase; Provisional. Length = 223 Score = 89.8 bits (223), Expect = 4e-19 Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 33/219 (15%) Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLIS 60 M I+ GP GSGKGTQ + +K ++ + +G + R + T LGK+ K ++ G L+ Sbjct: 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVP 60 Query: 61 DAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASM 120 D I ++ + ++ +G++LDG+PR QA+ L + +D VIE+ + Sbjct: 61 DDITIPMILETLKQDG-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVA 119 Query: 121 FKRIQVRVL-------------EAI----------ASEKSVRSDDK-YDVFLKRIENYRK 156 RI R L +AI E S R+DD+ + KR + Y Sbjct: 120 KNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELSTRADDQDEEAINKRHDIYYD 179 Query: 157 T---ILPLSSYYRDM----GCLYI-IDGMLDMDEVSRSI 187 T L + +++D+ YI +DG +DE+ ++ Sbjct: 180 TETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETL 218 >gnl|CDD|177851 PLN02200, PLN02200, adenylate kinase family protein. Length = 234 Score = 76.5 bits (188), Expect = 4e-15 Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 12/178 (6%) Query: 6 LGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVN 65 LG PGSGKGTQ ++ + LS GD+LR E+ N+ G + +++ G ++ + Sbjct: 49 LGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTV 108 Query: 66 QVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQ 125 +++ + D ++ F++DG+PRT + + I + V+ + M KR+ Sbjct: 109 KLIQKEMESSD-NNKFLIDGFPRTEENRIAFERIIG---AEPNVVLFFDCPEEEMVKRVL 164 Query: 126 VRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEV 183 R R DD D KR++ + LP+ YY G LY I+ + +DE+ Sbjct: 165 NR--------NQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEI 214 >gnl|CDD|179240 PRK01184, PRK01184, hypothetical protein; Provisional. Length = 184 Score = 41.1 bits (97), Expect = 2e-04 Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%) Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTL 44 I +G PGSGKG + ++++++ +P + GD++R EV + L Sbjct: 2 KIIGVVGMPGSGKG-EFSKIAREMGIPVVVMGDVIREEVKKRGL 44 >gnl|CDD|179771 PRK04182, PRK04182, cytidylate kinase; Provisional. Length = 180 Score = 40.6 bits (96), Expect = 3e-04 Identities = 17/36 (47%), Positives = 23/36 (63%) Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLR 36 M I GPPGSGK T A L++KL + +S G++ R Sbjct: 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFR 36 >gnl|CDD|162744 TIGR02173, cyt_kin_arch, cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017. Length = 171 Score = 40.1 bits (94), Expect = 4e-04 Identities = 18/36 (50%), Positives = 24/36 (66%) Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLR 36 M I GPPGSGK T A L++KL++ +S GD+ R Sbjct: 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFR 36 >gnl|CDD|181235 PRK08118, PRK08118, topology modulation protein; Reviewed. Length = 167 Score = 36.9 bits (86), Expect = 0.003 Identities = 14/26 (53%), Positives = 19/26 (73%) Query: 2 RIIFLGPPGSGKGTQACRLSQKLNVP 27 +II +G GSGK T A +L +KLN+P Sbjct: 3 KIILIGSGGSGKSTLARQLGEKLNIP 28 >gnl|CDD|184074 PRK13477, PRK13477, bifunctional pantoate ligase/cytidylate kinase; Provisional. Length = 512 Score = 33.7 bits (78), Expect = 0.036 Identities = 14/31 (45%), Positives = 19/31 (61%) Query: 7 GPPGSGKGTQACRLSQKLNVPQLSTGDMLRA 37 GP G+GK T +++KL + L TG M RA Sbjct: 291 GPAGAGKSTVTRAVAKKLGLLYLDTGAMYRA 321 >gnl|CDD|129128 TIGR00017, cmk, cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors. Length = 217 Score = 33.6 bits (77), Expect = 0.037 Identities = 16/37 (43%), Positives = 21/37 (56%) Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRA 37 M I GP G+GK T A +++KL L +G M RA Sbjct: 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRA 39 >gnl|CDD|168472 PRK06217, PRK06217, hypothetical protein; Validated. Length = 183 Score = 33.1 bits (76), Expect = 0.049 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 14/73 (19%) Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGD-----------MLRAEVDRNTLLGKQV 49 MRI G GSG T L+++L++P L T D R +R LL + + Sbjct: 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPPFTTKRPPEERLRLLLEDL 61 Query: 50 KGSME---SGSLI 59 + SGS + Sbjct: 62 RPREGWVLSGSAL 74 >gnl|CDD|178800 PRK00023, cmk, cytidylate kinase; Provisional. Length = 225 Score = 32.8 bits (76), Expect = 0.055 Identities = 18/31 (58%), Positives = 20/31 (64%) Query: 7 GPPGSGKGTQACRLSQKLNVPQLSTGDMLRA 37 GP GSGKGT A L++KL L TG M RA Sbjct: 11 GPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 >gnl|CDD|172457 PRK13951, PRK13951, bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional. Length = 488 Score = 32.2 bits (73), Expect = 0.089 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 6/54 (11%) Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSME 54 MRI +G GSGK T R+S+ L++ + + E++R G+ V+ E Sbjct: 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDE----EIERRE--GRSVRRIFE 48 >gnl|CDD|178887 PRK00131, aroK, shikimate kinase; Reviewed. Length = 175 Score = 31.7 bits (73), Expect = 0.12 Identities = 8/27 (29%), Positives = 14/27 (51%) Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVP 27 I+ +G G+GK T L+++L Sbjct: 5 PNIVLIGFMGAGKSTIGRLLAKRLGYD 31 >gnl|CDD|180911 PRK07261, PRK07261, topology modulation protein; Provisional. Length = 171 Score = 31.6 bits (72), Expect = 0.15 Identities = 15/29 (51%), Positives = 18/29 (62%) Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQL 29 M+I +G GSGK T A +LSQ N P L Sbjct: 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVL 29 >gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 694 Score = 31.3 bits (71), Expect = 0.19 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%) Query: 7 GPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVD 40 GP GSGK T +L Q+L PQ G +L VD Sbjct: 490 GPSGSGKSTLT-KLLQRLYTPQH--GQVLVDGVD 520 >gnl|CDD|181925 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed. Length = 712 Score = 30.9 bits (70), Expect = 0.20 Identities = 14/31 (45%), Positives = 17/31 (54%) Query: 7 GPPGSGKGTQACRLSQKLNVPQLSTGDMLRA 37 GP G GK + + L+Q L L TG M RA Sbjct: 8 GPAGVGKSSVSRALAQYLGYAYLDTGAMYRA 38 >gnl|CDD|184251 PRK13695, PRK13695, putative NTPase; Provisional. Length = 174 Score = 30.7 bits (70), Expect = 0.28 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEV-DRNTLLG 46 M+I GPPG GK T ++++ L G EV + +G Sbjct: 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFYTEEVREGGKRIG 47 >gnl|CDD|181743 PRK09270, PRK09270, nucleoside triphosphate hydrolase domain-containing protein; Reviewed. Length = 229 Score = 30.3 bits (69), Expect = 0.33 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%) Query: 2 RIIFL-GPPGSGKGTQACRLSQKLN 25 I+ + GPPG+GK T A L L Sbjct: 34 TIVGIAGPPGAGKSTLAEFLEALLQ 58 >gnl|CDD|184430 PRK13975, PRK13975, thymidylate kinase; Provisional. Length = 196 Score = 30.1 bits (68), Expect = 0.38 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 16/85 (18%) Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNVP---QLSTGDMLRAEVDRNTLLGKQVKGS----- 52 I+F G GSGK TQA L++KLN + + G + ++ R L G + Sbjct: 3 KFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKI--GKLIREILSGSKCDKETLALL 60 Query: 53 -----MESGSLIS-DAIVNQVVCDR 71 +E I D VVCDR Sbjct: 61 FAADRVEHVKEIEEDLKKRDVVCDR 85 >gnl|CDD|149480 pfam08433, KTI12, Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity. Length = 266 Score = 29.9 bits (68), Expect = 0.47 Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 3 IIFLGPPGSGKGTQACRLSQKL 24 II G P SGK T+A L++ L Sbjct: 2 IILTGLPSSGKSTRAKELAKYL 23 >gnl|CDD|129465 TIGR00368, TIGR00368, Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain. Length = 499 Score = 29.4 bits (66), Expect = 0.61 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%) Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLS 30 ++ GPPGSGK A RL L P L+ Sbjct: 214 LLLFGPPGSGKTMLASRLQGIL--PPLT 239 >gnl|CDD|166511 PLN02870, PLN02870, Probable galacturonosyltransferase. Length = 533 Score = 29.1 bits (65), Expect = 0.76 Identities = 28/112 (25%), Positives = 40/112 (35%), Gaps = 28/112 (25%) Query: 29 LSTGDMLRAEVDRNTLLGKQVKGSMESGSLISDAIVNQVVCDRIRLPDCDSGFILDGYPR 88 LST ++L A V V S SL + IV V+ D+ S F L+ Sbjct: 211 LSTDNILAASV---------VVSSTVQSSLKPEKIVFHVITDKKTYAGMHSWFALNSVSP 261 Query: 89 TVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEKSVRS 140 + + K +H F R V VLEA+ S +R+ Sbjct: 262 AIVEVKGVHQF-------------------DWLTRENVPVLEAVESHNGIRN 294 >gnl|CDD|168313 PRK05957, PRK05957, aspartate aminotransferase; Provisional. Length = 389 Score = 29.3 bits (66), Expect = 0.77 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%) Query: 138 VRSDDKYDVFLKR-IENYRKTILPLSSYYRDMGC-LYIIDGMLDMDEVSRSIDSL 190 V +D +K+ I YR ++P +++ GC L I G L I+ L Sbjct: 325 VNTDLNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGALQKATAKEGIERL 379 >gnl|CDD|161849 TIGR00382, clpX, endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction. Length = 413 Score = 28.6 bits (64), Expect = 1.0 Identities = 13/25 (52%), Positives = 17/25 (68%) Query: 3 IIFLGPPGSGKGTQACRLSQKLNVP 27 I+ +GP GSGK A L++ LNVP Sbjct: 119 ILLIGPTGSGKTLLAQTLARILNVP 143 >gnl|CDD|183342 PRK11860, PRK11860, bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional. Length = 661 Score = 28.5 bits (64), Expect = 1.2 Identities = 13/30 (43%), Positives = 18/30 (60%) Query: 7 GPPGSGKGTQACRLSQKLNVPQLSTGDMLR 36 GP SGKGT A R+++ L L +G + R Sbjct: 449 GPTASGKGTVAARVAEALGYHYLDSGALYR 478 >gnl|CDD|118315 pfam09784, L31, Mitochondrial ribosomal protein L31. This is a family of mitochondrial ribosomal proteins. L31 is essential for mitochondrial function in yeast. Length = 103 Score = 28.5 bits (64), Expect = 1.2 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 7/58 (12%) Query: 106 AIDAVIELRVEDASMFKRIQ-----VRVLEAIASEKSVRSDDKYDVFLKRIENYRKTI 158 A+D VI+ + ++ R + R+L E+ + DKY F K+ + YRK I Sbjct: 30 AVDDVIK--TLNEALQLRGKSRKSLDRLLAKFPPEEEMSPKDKYTTFDKKSKGYRKGI 85 >gnl|CDD|182120 PRK09862, PRK09862, putative ATP-dependent protease; Provisional. Length = 506 Score = 28.0 bits (62), Expect = 1.8 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRA 37 ++ +GPPG+GK A R++ L P LS + L + Sbjct: 213 LLLIGPPGTGKTMLASRINGLL--PDLSNEEALES 245 >gnl|CDD|132613 TIGR03574, selen_PSTK, L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity. Length = 249 Score = 27.8 bits (62), Expect = 1.9 Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 3 IIFLGPPGSGKGTQACRLSQKL 24 II G PG GK T + L++KL Sbjct: 2 IILTGLPGVGKSTFSKELAKKL 23 >gnl|CDD|183985 PRK13341, PRK13341, recombination factor protein RarA/unknown domain fusion protein; Reviewed. Length = 725 Score = 27.7 bits (62), Expect = 2.1 Identities = 9/14 (64%), Positives = 9/14 (64%) Query: 4 IFLGPPGSGKGTQA 17 I GPPG GK T A Sbjct: 56 ILYGPPGVGKTTLA 69 >gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 Score = 27.7 bits (61), Expect = 2.1 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%) Query: 2 RIIFLGPPGSGKGTQACRLSQKLNVPQ-----LSTGDMLRAEVDRNTLLGKQVKGSMESG 56 I+ +GPPGSGK T A L+++L P + D+L +D+ L+ K + SG Sbjct: 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSG 63 >gnl|CDD|163057 TIGR02881, spore_V_K, stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. Length = 261 Score = 27.8 bits (62), Expect = 2.3 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 7/47 (14%) Query: 3 IIFLGPPGSGKGTQA---CRLSQKLNVPQLSTGDMLRAEVDRNTLLG 46 +IF G PG+GK T A +L +++NV LS G ++ EV+R L+G Sbjct: 45 MIFKGNPGTGKTTVARILGKLFKEMNV--LSKGHLI--EVERADLVG 87 >gnl|CDD|129547 TIGR00455, apsK, adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment. Length = 184 Score = 27.4 bits (61), Expect = 2.4 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%) Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLST----GDMLRAEVDRN 42 I G GSGK T A L +KL GD +R ++++ Sbjct: 21 IWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKD 64 >gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood. Length = 143 Score = 27.6 bits (62), Expect = 2.5 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 4/24 (16%) Query: 2 RIIFLGPPGSGKGTQACRLSQKLN 25 +I+ +G G GK T L+Q LN Sbjct: 3 KIMLIGRSGCGKTT----LTQALN 22 >gnl|CDD|183986 PRK13342, PRK13342, recombination factor protein RarA; Reviewed. Length = 413 Score = 27.4 bits (62), Expect = 2.5 Identities = 9/15 (60%), Positives = 11/15 (73%) Query: 3 IIFLGPPGSGKGTQA 17 +I GPPG+GK T A Sbjct: 39 MILWGPPGTGKTTLA 53 >gnl|CDD|181536 PRK08674, PRK08674, bifunctional phosphoglucose/phosphomannose isomerase; Validated. Length = 337 Score = 27.3 bits (61), Expect = 2.9 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Query: 2 RIIFLGPPGSGKGTQACR--LSQKLNVP-QLSTGDMLRAEVDRNTLL 45 I+ G GSG G R L +L VP ++ L A VD TL+ Sbjct: 36 NIVISGMGGSGIGGDLLRILLFDELKVPVFVNRDYTLPAFVDEKTLV 82 >gnl|CDD|169667 PRK09112, PRK09112, DNA polymerase III subunit delta'; Validated. Length = 351 Score = 27.3 bits (61), Expect = 3.1 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 3 IIFLGPPGSGKGTQACRLSQK-LNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSL 58 ++F GP G GK T A L+ L+ P + A+ D + + +Q+ L Sbjct: 48 LLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLL 104 >gnl|CDD|184934 PRK14970, PRK14970, DNA polymerase III subunits gamma and tau; Provisional. Length = 367 Score = 26.8 bits (59), Expect = 3.6 Identities = 12/29 (41%), Positives = 17/29 (58%) Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLST 31 ++F GP G GK T A L++K+N P Sbjct: 42 LLFCGPRGVGKTTCARILARKINQPGYDD 70 >gnl|CDD|130546 TIGR01481, ccpA, catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways. Length = 329 Score = 26.7 bits (59), Expect = 4.2 Identities = 10/22 (45%), Positives = 14/22 (63%) Query: 42 NTLLGKQVKGSMESGSLISDAI 63 NTLL KQV G + G I++ + Sbjct: 109 NTLLSKQVDGIIFMGGTITEKL 130 >gnl|CDD|161743 TIGR00174, miaA, tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine. Length = 287 Score = 26.6 bits (59), Expect = 4.9 Identities = 12/33 (36%), Positives = 17/33 (51%) Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDML 35 I +GP GK A +L++KLN +S M Sbjct: 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQ 34 >gnl|CDD|105560 PRK12339, PRK12339, 2-phosphoglycerate kinase; Provisional. Length = 197 Score = 26.3 bits (58), Expect = 5.0 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%) Query: 2 RIIFL-GPPGSGKGTQACRLSQKLNVPQLSTGD----MLRAEVDRNTLLGKQVKGSMES- 55 I F+ G PG GK + + +++ + + +GD LR VD +L K V + E Sbjct: 4 TIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFY 63 Query: 56 GSLISDAIV 64 GS+ + IV Sbjct: 64 GSMTDENIV 72 >gnl|CDD|180682 PRK06761, PRK06761, hypothetical protein; Provisional. Length = 282 Score = 26.3 bits (58), Expect = 5.0 Identities = 11/24 (45%), Positives = 13/24 (54%) Query: 3 IIFLGPPGSGKGTQACRLSQKLNV 26 II G PG GK T A L+ L+ Sbjct: 6 IIIEGLPGFGKSTTAKMLNDILSQ 29 >gnl|CDD|116338 pfam07724, AAA_2, AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 168 Score = 26.4 bits (59), Expect = 5.0 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%) Query: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAE 38 +FLGP G GK A L++ L ++R + Sbjct: 6 FLFLGPTGVGKTELAKALAELLFG---DERALIRID 38 >gnl|CDD|180607 PRK06526, PRK06526, transposase; Provisional. Length = 254 Score = 26.4 bits (58), Expect = 5.2 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 7/24 (29%) Query: 3 IIFLGPPGSGK-------GTQACR 19 ++FLGPPG+GK G +AC+ Sbjct: 101 VVFLGPPGTGKTHLAIGLGIRACQ 124 >gnl|CDD|179660 PRK03839, PRK03839, putative kinase; Provisional. Length = 180 Score = 26.2 bits (58), Expect = 5.5 Identities = 11/26 (42%), Positives = 14/26 (53%) Query: 1 MRIIFLGPPGSGKGTQACRLSQKLNV 26 M I G PG GK T + L++KL Sbjct: 1 MIIAITGTPGVGKTTVSKLLAEKLGY 26 >gnl|CDD|183703 PRK12724, PRK12724, flagellar biosynthesis regulator FlhF; Provisional. Length = 432 Score = 26.5 bits (58), Expect = 5.6 Identities = 10/21 (47%), Positives = 14/21 (66%) Query: 3 IIFLGPPGSGKGTQACRLSQK 23 + F+GP GSGK T +L+ K Sbjct: 226 VFFVGPTGSGKTTSIAKLAAK 246 >gnl|CDD|184920 PRK14956, PRK14956, DNA polymerase III subunits gamma and tau; Provisional. Length = 484 Score = 26.4 bits (58), Expect = 5.7 Identities = 12/22 (54%), Positives = 15/22 (68%) Query: 4 IFLGPPGSGKGTQACRLSQKLN 25 IF GP G GK T A L+++LN Sbjct: 44 IFFGPRGVGKTTIARILAKRLN 65 >gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional. Length = 1470 Score = 26.0 bits (57), Expect = 6.4 Identities = 12/31 (38%), Positives = 18/31 (58%) Query: 4 IFLGPPGSGKGTQACRLSQKLNVPQLSTGDM 34 + LGPP SGK T L+ KL+ +G++ Sbjct: 195 LLLGPPSSGKTTLLLALAGKLDPSLKVSGEI 225 >gnl|CDD|179921 PRK05057, aroK, shikimate kinase I; Reviewed. Length = 172 Score = 26.2 bits (58), Expect = 6.4 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%) Query: 2 RIIFL-GPPGSGKGTQACRLSQKLN 25 R IFL GP G+GK T +L+Q+LN Sbjct: 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 >gnl|CDD|149019 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 139 Score = 26.1 bits (58), Expect = 6.5 Identities = 10/23 (43%), Positives = 16/23 (69%) Query: 3 IIFLGPPGSGKGTQACRLSQKLN 25 ++ +GPPG+GK A RL+ L+ Sbjct: 2 VLLVGPPGTGKSELAERLAAALS 24 >gnl|CDD|184926 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau; Provisional. Length = 472 Score = 25.9 bits (57), Expect = 6.9 Identities = 12/22 (54%), Positives = 15/22 (68%) Query: 4 IFLGPPGSGKGTQACRLSQKLN 25 IF GP G+GK T A L++ LN Sbjct: 40 IFAGPRGTGKTTVARILAKSLN 61 >gnl|CDD|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal protein S1; Provisional. Length = 863 Score = 25.8 bits (56), Expect = 7.0 Identities = 13/31 (41%), Positives = 17/31 (54%) Query: 7 GPPGSGKGTQACRLSQKLNVPQLSTGDMLRA 37 GP GSGK + L+ +L L+TG RA Sbjct: 41 GPAGSGKSSVCRLLASRLGAQCLNTGSFYRA 71 >gnl|CDD|184917 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau; Provisional. Length = 486 Score = 25.9 bits (57), Expect = 7.2 Identities = 13/30 (43%), Positives = 17/30 (56%) Query: 4 IFLGPPGSGKGTQACRLSQKLNVPQLSTGD 33 IF GP G+GK T A L++ LN G+ Sbjct: 42 IFAGPRGTGKTTIARILAKVLNCLNPQEGE 71 >gnl|CDD|132443 TIGR03402, FeS_nifS, cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. Length = 379 Score = 25.7 bits (57), Expect = 8.1 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 14/50 (28%) Query: 147 FLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDMDEVSRSI--DSLLVSV 194 L++ + Y+ T LP+ G LD++E+ +I D+ LVSV Sbjct: 105 HLEK-QGYKVTYLPVDEE-----------GRLDLEELRAAITDDTALVSV 142 >gnl|CDD|162991 TIGR02734, crtI_fam, phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. Length = 502 Score = 25.7 bits (57), Expect = 8.1 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Query: 24 LNVPQLSTGDMLRAEVDRNTLLGKQVKGSMES--GSLISDAIVNQV 67 VP LS D+LRA D LL S+ S SD + Q Sbjct: 137 GYVPFLSPRDLLRA--DLPQLLALLAWRSLYSKVARFFSDERLRQA 180 >gnl|CDD|178596 PLN03025, PLN03025, replication factor C subunit; Provisional. Length = 319 Score = 25.8 bits (57), Expect = 8.2 Identities = 10/22 (45%), Positives = 14/22 (63%) Query: 3 IIFLGPPGSGKGTQACRLSQKL 24 +I GPPG+GK T L+ +L Sbjct: 37 LILSGPPGTGKTTSILALAHEL 58 >gnl|CDD|180029 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX; Provisional. Length = 412 Score = 25.9 bits (58), Expect = 8.2 Identities = 12/25 (48%), Positives = 17/25 (68%) Query: 3 IIFLGPPGSGKGTQACRLSQKLNVP 27 I+ +GP GSGK A L++ L+VP Sbjct: 111 ILLIGPTGSGKTLLAQTLARILDVP 135 >gnl|CDD|177750 PLN00146, PLN00146, 40S ribosomal protein S15a; Provisional. Length = 130 Score = 25.7 bits (57), Expect = 8.5 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 10/47 (21%) Query: 143 KYDVFLKRIENYRKTILPLSSYYRDMGCLYII----DGMLDMDEVSR 185 ++DV +K IE + +LP R G YI+ G++D +E R Sbjct: 78 RFDVKVKEIEAWTARLLP----SRQFG--YIVLTTSAGIMDHEEARR 118 >gnl|CDD|184315 PRK13768, PRK13768, GTPase; Provisional. Length = 253 Score = 25.6 bits (57), Expect = 8.8 Identities = 8/15 (53%), Positives = 9/15 (60%) Query: 1 MRIIFLGPPGSGKGT 15 + FLG GSGK T Sbjct: 3 YIVFFLGTAGSGKTT 17 >gnl|CDD|131580 TIGR02528, EutP, ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. Length = 142 Score = 25.5 bits (56), Expect = 9.0 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 4/24 (16%) Query: 2 RIIFLGPPGSGKGTQACRLSQKLN 25 RI+F+G G GK T L+Q L Sbjct: 2 RIMFIGSVGCGKTT----LTQALQ 21 >gnl|CDD|184937 PRK14974, PRK14974, cell division protein FtsY; Provisional. Length = 336 Score = 25.7 bits (57), Expect = 9.4 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 4/39 (10%) Query: 3 IIFLGPPGSGKGTQACRLSQKLN----VPQLSTGDMLRA 37 I+F+G G+GK T +L+ L ++ GD RA Sbjct: 143 IVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA 181 >gnl|CDD|181294 PRK08211, PRK08211, putative dehydratase; Provisional. Length = 655 Score = 25.4 bits (56), Expect = 9.6 Identities = 8/19 (42%), Positives = 12/19 (63%) Query: 28 QLSTGDMLRAEVDRNTLLG 46 +L GD++ +DR TL G Sbjct: 560 KLRDGDLIEIIIDRRTLEG 578 >gnl|CDD|131926 TIGR02880, cbbX_cfxQ, probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. Length = 284 Score = 25.6 bits (56), Expect = 9.9 Identities = 11/20 (55%), Positives = 14/20 (70%) Query: 5 FLGPPGSGKGTQACRLSQKL 24 F G PG+GK T A R++Q L Sbjct: 63 FTGNPGTGKTTVALRMAQIL 82 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.137 0.386 Gapped Lambda K H 0.267 0.0643 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,170,149 Number of extensions: 192269 Number of successful extensions: 677 Number of sequences better than 10.0: 1 Number of HSP's gapped: 649 Number of HSP's successfully gapped: 93 Length of query: 201 Length of database: 5,994,473 Length adjustment: 89 Effective length of query: 112 Effective length of database: 4,071,361 Effective search space: 455992432 Effective search space used: 455992432 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 55 (25.1 bits)