BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780240|ref|YP_003064653.1| adenylate kinase [Candidatus
Liberibacter asiaticus str. psy62]
         (201 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780240|ref|YP_003064653.1| adenylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 201

 Score =  405 bits (1040), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/201 (100%), Positives = 201/201 (100%)

Query: 1   MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLIS 60
           MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLIS
Sbjct: 1   MRIIFLGPPGSGKGTQACRLSQKLNVPQLSTGDMLRAEVDRNTLLGKQVKGSMESGSLIS 60

Query: 61  DAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASM 120
           DAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASM
Sbjct: 61  DAIVNQVVCDRIRLPDCDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASM 120

Query: 121 FKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDM 180
           FKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDM
Sbjct: 121 FKRIQVRVLEAIASEKSVRSDDKYDVFLKRIENYRKTILPLSSYYRDMGCLYIIDGMLDM 180

Query: 181 DEVSRSIDSLLVSVRKKCSSS 201
           DEVSRSIDSLLVSVRKKCSSS
Sbjct: 181 DEVSRSIDSLLVSVRKKCSSS 201


>gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 334

 Score = 28.5 bits (62), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 2  RIIFLGPPGSGKGTQACRLSQKLNVPQLST 31
           ++F+GPPG GK T A  ++++L V   ST
Sbjct: 56 HVLFVGPPGLGKTTLAQVVARELGVNFRST 85


>gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62]
          Length = 647

 Score = 27.3 bits (59), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 3   IIFLGPPGSGKGTQACRLSQKLNVP 27
           ++ +GPPG+GK   A  ++ + NVP
Sbjct: 184 VLLVGPPGTGKTLLARAVAGEANVP 208


>gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 234

 Score = 24.3 bits (51), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 9/14 (64%), Positives = 11/14 (78%)

Query: 2  RIIFLGPPGSGKGT 15
          RI+ LGP G+GK T
Sbjct: 27 RIVILGPSGAGKST 40


>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 257

 Score = 23.9 bits (50), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 2  RIIFLGPPGSGKGT 15
          R+I  GP GSGK T
Sbjct: 45 RVIIAGPSGSGKST 58


>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 249

 Score = 23.5 bits (49), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 3  IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDML 35
          +  +GP GSGK T +  LS   +  +++ GD+L
Sbjct: 32 VAIMGPNGSGKSTLSYLLSGHKDY-EITAGDIL 63


>gi|254780532|ref|YP_003064945.1| aminodeoxychorismate lyase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 325

 Score = 23.5 bits (49), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 77  CDSGFILDGYPRTVDQAKSLHAFISNMDCAIDAVIELRVEDASMFKRIQVRVLEAIASEK 136
           C S +    +P    +++ L+  +      +D V E+R  D  +  +  + +L +I  ++
Sbjct: 144 CPSTY---NFPLGTHRSEILNQAMLKQKQVVDEVWEIRDVDHPIKSKEDLVILASIVEKE 200

Query: 137 SVRSDDKYDVFLKRIENYRKTI 158
           + R+D++  V    I  + K+I
Sbjct: 201 TSRADERAHVASVFINRFSKSI 222


>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 424

 Score = 23.5 bits (49), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 3   IIFLGPPGSGKGTQACRLSQKLNVP 27
           I+ +GP G GK   A  L++ ++VP
Sbjct: 116 ILLVGPTGCGKTYLAQTLARIIDVP 140


>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 254

 Score = 23.1 bits (48), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 8/31 (25%), Positives = 18/31 (58%)

Query: 100 ISNMDCAIDAVIELRVEDASMFKRIQVRVLE 130
           + N    ID ++E+ ++ AS+F  ++ R+  
Sbjct: 116 LGNNKADIDQIVEMSLKKASLFNEVKDRLFH 146


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.137    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,838
Number of Sequences: 1233
Number of extensions: 4526
Number of successful extensions: 25
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 11
length of query: 201
length of database: 328,796
effective HSP length: 70
effective length of query: 131
effective length of database: 242,486
effective search space: 31765666
effective search space used: 31765666
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 36 (18.5 bits)