Query gi|254780241|ref|YP_003064654.1| preprotein translocase subunit SecY [Candidatus Liberibacter asiaticus str. psy62] Match_columns 444 No_of_seqs 128 out of 1544 Neff 6.2 Searched_HMMs 39220 Date Tue May 24 05:21:44 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780241.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK09204 secY preprotein trans 100.0 0 0 928.6 44.5 424 12-437 3-427 (427) 2 PRK12907 secY preprotein trans 100.0 0 0 922.3 45.7 420 13-438 4-434 (434) 3 CHL00161 secY preprotein trans 100.0 0 0 903.4 44.7 413 15-435 2-417 (417) 4 TIGR00967 3a0501s007 preprotei 100.0 0 0 873.1 39.4 407 24-430 1-489 (489) 5 COG0201 SecY Preprotein transl 100.0 0 0 851.3 41.5 420 10-435 6-432 (436) 6 PRK12417 secY preprotein trans 100.0 0 0 826.5 35.6 395 16-434 2-399 (399) 7 PRK08568 preprotein translocas 100.0 0 0 776.8 37.9 394 17-436 20-463 (466) 8 pfam00344 SecY eubacterial sec 100.0 0 0 653.1 34.6 334 80-419 1-340 (340) 9 TIGR02920 secY_rel translocase 100.0 0 0 542.2 28.7 396 23-434 2-403 (403) 10 PTZ00219 Sec61 protein; Provis 100.0 0 0 458.6 32.4 382 19-427 23-467 (472) 11 KOG1373 consensus 100.0 0 0 364.4 22.7 385 18-430 24-470 (476) 12 pfam10559 Plug_translocon Plug 86.4 0.12 3.1E-06 29.6 -0.9 33 35-75 1-33 (35) 13 pfam05697 Trigger_N Bacterial 80.2 2 5.1E-05 21.8 3.3 37 337-373 18-60 (144) 14 pfam03248 Rer1 Rer1 family. RE 80.2 4.2 0.00011 19.8 7.3 114 313-433 45-165 (175) 15 TIGR00814 stp serine transport 77.0 5.2 0.00013 19.2 5.7 20 83-102 30-49 (419) 16 PRK01490 tig trigger factor; P 73.3 3.2 8.1E-05 20.6 2.7 12 38-49 34-45 (435) 17 pfam04923 Ninjurin Ninjurin. N 72.5 6.7 0.00017 18.5 6.0 45 89-133 51-96 (116) 18 TIGR00945 tatC twin arginine-t 66.8 4.7 0.00012 19.5 2.4 26 20-45 5-30 (226) 19 TIGR00858 bioF 8-amino-7-oxono 62.6 4.5 0.00011 19.6 1.7 22 340-363 328-349 (378) 20 TIGR00915 2A0602 RND transport 61.4 11 0.00029 17.1 3.7 146 225-376 402-598 (1058) 21 pfam07330 DUF1467 Protein of u 58.4 13 0.00032 16.7 4.2 40 349-388 31-70 (85) 22 TIGR01271 CFTR_protein cystic 58.2 13 0.00032 16.7 5.1 91 331-432 276-383 (1534) 23 TIGR02230 ATPase_gene1 F0F1-AT 51.7 16 0.00041 16.1 3.4 57 360-416 21-88 (100) 24 COG0544 Tig FKBP-type peptidyl 50.2 7.8 0.0002 18.1 1.2 14 341-354 315-328 (441) 25 cd05135 RasGAP_RASAL Ras GTPas 48.2 18 0.00047 15.7 4.3 14 166-179 94-107 (333) 26 TIGR02204 MsbA_rel ABC transpo 44.9 21 0.00053 15.4 4.3 44 307-350 268-318 (576) 27 PRK10517 magnesium-transportin 44.3 21 0.00054 15.3 5.5 39 392-430 858-897 (900) 28 TIGR02876 spore_yqfD sporulati 43.5 15 0.00038 16.3 1.8 46 312-358 84-137 (406) 29 cd05394 RasGAP_RASA2 RASA2 (or 41.6 23 0.00059 15.1 3.7 16 165-180 89-104 (313) 30 TIGR01522 ATPase-IIA2_Ca calci 41.3 15 0.00038 16.3 1.5 89 16-112 720-823 (856) 31 pfam08006 DUF1700 Protein of u 37.5 27 0.00068 14.7 6.4 13 165-177 102-114 (181) 32 cd05137 RasGAP_CLA2_BUD2 CLA2/ 34.2 30 0.00077 14.3 4.0 18 82-99 44-61 (395) 33 cd05395 RasGAP_RASA4 Ras GTPas 33.9 30 0.00078 14.3 4.0 16 327-342 203-218 (337) 34 TIGR02810 agaZ_gatZ D-tagatose 33.3 9.9 0.00025 17.4 -0.4 14 35-48 164-177 (430) 35 PRK08470 adenylosuccinate lyas 27.6 39 0.00099 13.6 4.9 28 329-356 327-354 (442) 36 TIGR00115 tig trigger factor; 27.6 21 0.00054 15.3 0.5 32 351-382 41-72 (475) 37 pfam05313 Pox_P21 Poxvirus P21 27.4 39 0.001 13.6 5.6 12 175-186 104-115 (190) 38 TIGR01373 soxB sarcosine oxida 26.8 25 0.00063 14.9 0.7 10 271-280 304-313 (407) 39 pfam10151 DUF2359 Uncharacteri 25.7 42 0.0011 13.4 1.8 43 94-136 5-49 (469) 40 pfam07438 DUF1514 Protein of u 24.9 43 0.0011 13.3 3.4 26 405-430 11-36 (66) 41 PRK07380 adenylosuccinate lyas 24.6 44 0.0011 13.3 5.5 87 262-355 261-353 (431) 42 KOG3802 consensus 24.5 44 0.0011 13.3 2.1 14 168-181 263-276 (398) 43 pfam12263 DUF3611 Protein of u 24.2 45 0.0011 13.2 10.1 78 314-399 56-137 (183) 44 TIGR00707 argD acetylornithine 21.9 31 0.00078 14.3 0.4 15 177-191 250-265 (402) 45 cd05134 RasGAP_RASA3 RASA3 (or 21.8 50 0.0013 12.9 4.0 15 166-180 90-104 (310) 46 COG1086 Predicted nucleoside-d 21.2 38 0.00097 13.7 0.8 24 340-363 484-516 (588) 47 TIGR02854 spore_II_GA sigma-E 20.7 53 0.0013 12.8 5.2 51 127-177 76-128 (320) No 1 >PRK09204 secY preprotein translocase subunit SecY; Reviewed Probab=100.00 E-value=0 Score=928.62 Aligned_cols=424 Identities=56% Similarity=0.959 Sum_probs=405.5 Q ss_pred CCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHH Q ss_conf 58898835878899999999999999850679898739889999873035537889986427702220468735478999 Q gi|254780241|r 12 LNFASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYIS 91 (444) Q Consensus 12 ~~~~~~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyIt 91 (444) .+++|+||+||||||++||++++++||+|++||+||+|.+++++..+ ++++++++|+|+|||++++|+|+|||+|||| T Consensus 3 ~~~~~~~~~~~Lr~ril~Tl~iL~iyrlG~~IplPGid~~~~~~~~~--~~~~l~~~~~fsGGa~~~~SifaLGI~PyIt 80 (427) T PRK09204 3 STLSNAFKIKELRKRILFTLGALIVFRLGSYIPVPGIDPAALAALFD--SGGILGLFNMFSGGALSRFSIFALGIMPYIS 80 (427) T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH--CCCHHHHHHHHHCCCHHCCHHHHHCHHHHHH T ss_conf 88999975799999999999999999984358889859999999874--3658999998612223116198845288999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 99999999852154786411463689999988699999999999999997235567622587504799999999999999 Q gi|254780241|r 92 ASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMF 171 (444) Q Consensus 92 ASIi~QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~~~~~~~~~~~~~~~il~L~aGs~i 171 (444) |||+||||+..+|+++|||||||+||||+|+||||+|+++|++||++++.++.+..+...+++..+++.++++|++||++ T Consensus 81 ASII~QLL~~~~p~l~~l~kege~Gr~ki~~~tr~Ltl~~A~iQs~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~aGs~~ 160 (427) T PRK09204 81 ASIIMQLLTVVIPKLEELKKEGEAGRRKINQYTRYLTLVLAVVQSIGIAAGLESGSGLVINGGIFFYLTIVITLTAGTMF 160 (427) T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 99999999874164776601358889999999999999999999999999833567532487199999999999999999 Q ss_pred HHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 99999987408898752036210146576788743333200123215899999999999999999886533232101101 Q gi|254780241|r 172 LVWLGEQITMRGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGSISTPLMLLIFSSTVAVIALVIFFERAQRRLLIQYPK 251 (444) Q Consensus 172 l~wl~e~It~~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~~~~~~~~~l~~~~~~l~vi~~iV~v~~~~rrIPi~y~~ 251 (444) +||+||+|||||||||+|++|++||++++|+++.+.++....+..+....++.+..++++++++||+|++|||||+|||| T Consensus 161 l~WL~e~It~~GIGnGiSLiI~~gIis~lp~~i~~~~~~~~~~~~~~~~~i~~~~~~~~ii~~vV~~~~~~rrIPvqyak 240 (427) T PRK09204 161 LMWLGEQITERGIGNGISLIIFAGIVAGLPSAIGQTFELARTGSLSILVFLLLIVLFLAVIAFVVFVEQAQRRIPVQYAK 240 (427) T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHH T ss_conf 99999998436878870799999998864899999999860576529999999999999999999864304541087677 Q ss_pred HHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH Q ss_conf 211664235643114442000023799999999986888887507777-2479998875306676316999999999999 Q gi|254780241|r 252 RQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSS-SPTWIVGLVDSLGHGRSFYMVLYSVFIVFFA 330 (444) Q Consensus 252 ~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~y~i~y~ilii~Fs 330 (444) |+.+++.++++++|+|+|+|||||||+||||+++++|++++++++..+ ..+|..++.+++++++|+|.++|++++++|| T Consensus 241 ~~~g~~~~~~~~sylPlKlN~aGvmPiIfAssll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~y~ilii~F~ 320 (427) T PRK09204 241 RQVGRKMYGGQSSYLPLKVNMAGVIPVIFASSILLFPATIAQFFGNTSGWSSWLQDIANYLSPGSPLYILLYALLIIFFT 320 (427) T ss_pred HHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 77435566787762004434556648999999999999999981777763079999998727885099999999999999 Q ss_pred HHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH Q ss_conf 99986237989999999963884476279857999999999999999999999999999999998488410025799999 Q gi|254780241|r 331 FFYTAIVFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLII 410 (444) Q Consensus 331 ~f~~~i~~~P~~iAe~L~k~g~~IpGiRPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~~~~~gGTslLI~ 410 (444) |||+++++||||+||||+|+|+||||+||||+|++||+|+++|+|++||+|++++|++|++++...+.+..|||||+||+ T Consensus 321 ~fy~~i~~np~~iAe~l~k~g~~IPGiRPG~~T~~yL~~vl~rit~~GaifL~~ia~~p~l~~~~~~~~~~~ggTslLI~ 400 (427) T PRK09204 321 FFYTAIQFNPEEIAENLKKSGGFIPGIRPGEQTAEYLDKVLTRLTLVGALYLAFIALLPELLQKALNVPFYFGGTSLLIV 400 (427) T ss_pred HHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE T ss_conf 99998746889999999987985789899931499999999999999899999999999999996387703565001200 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999998526564311 Q gi|254780241|r 411 VSVVLDTIVQIQGYLIAQQYEGVFKKS 437 (444) Q Consensus 411 Vgv~l~~~~qi~a~~~~~~Y~~~~~~~ 437 (444) |||++||+||+|||+.||+||+++||+ T Consensus 401 VgV~ldt~~qi~s~l~~~~Y~g~~~~~ 427 (427) T PRK09204 401 VGVALDTMKQIESQLMSRQYEGFLKKA 427 (427) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 152898999999999999888884269 No 2 >PRK12907 secY preprotein translocase subunit SecY; Reviewed Probab=100.00 E-value=0 Score=922.29 Aligned_cols=420 Identities=39% Similarity=0.687 Sum_probs=381.5 Q ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHH Q ss_conf 88988358788999999999999998506798987398899998730355378899864277022204687354789999 Q gi|254780241|r 13 NFASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYISA 92 (444) Q Consensus 13 ~~~~~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyItA 92 (444) +++|+||+||||||++||++++++||+|++||+||+|.++++. ++++++++++|+|+|||++++|+|+|||+||||| T Consensus 4 ~~~~~~~~~elr~rilfTl~iL~iyrlG~~IPiPgid~~~~~~---~~~~~~l~~~n~fsGGa~~~~SiFaLGI~PYItA 80 (434) T PRK12907 4 TISNFMRVAEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKV---QDQANVLGMLNVFGGGALQHFSIFAVGITPYITA 80 (434) T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH---HCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH T ss_conf 8999975799999999999999999961618989959999944---4123599999974063375424999655889999 Q ss_pred HHHHHHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 999999985-215478641146368999998869999999999999999723556--76225875047999999999999 Q gi|254780241|r 93 SIIVQLIAA-TVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNG--QGIVSDSDYFFVFSTIITLLGGT 169 (444) Q Consensus 93 SIi~QLL~~-~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~--~~~~~~~~~~~~~~~il~L~aGs 169 (444) ||+||||+. .+|+++||+||||+||||+++||||+|+++|++||++++.++++. .....++++...+.++++|+||| T Consensus 81 SIi~QLL~~~~~P~l~~l~keGe~Grkki~~~TR~lTl~la~iQs~~i~~~l~~~~~~~~~~~~~~~~~l~i~~~L~aGt 160 (434) T PRK12907 81 SIIVQLLQMDVIPKFSEWAKQGEMGRKKSAQFTRYFTIILAFIQAIGMSYGFNNIAGGQLITDQSWTTYLFIATVLTAGT 160 (434) T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHH T ss_conf 99999986261521899877478768999999999999999999999999862046764122661799999999999999 Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999874088987520362101465767887433332001232-----1589999999999999999988653323 Q gi|254780241|r 170 MFLVWLGEQITMRGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGSI-----STPLMLLIFSSTVAVIALVIFFERAQRR 244 (444) Q Consensus 170 ~il~wl~e~It~~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~~~~-----~~~~~l~~~~~~l~vi~~iV~v~~~~rr 244 (444) +++||+||+|||||||||+|++||+||++++|+.+.+.+.....+.. .....+++..+++++++++|++|++||| T Consensus 161 ~~lmWLge~IT~~GIGNG~SliIf~gIvs~lP~~i~~~~~~~~~~~~~~~~~~~i~~~l~~~~~l~ii~~iV~v~~a~rr 240 (434) T PRK12907 161 AFLLWLGEQITANGVGNGISMLIFAGLVAAIPNVANQIYLQQFQNAGDQLFMHIIKMLLIGLVILAIVVGVIYIQQAVRK 240 (434) T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999988997517688834777798876414999999999974145216899999999999999999999999998877 Q ss_pred HHHCCCHHHCCCCCC-CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 210110121166423-5643114442000023799999999986888887507777247999887530667631699999 Q gi|254780241|r 245 LLIQYPKRQVGNRMF-QDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSSPTWIVGLVDSLGHGRSFYMVLYS 323 (444) Q Consensus 245 IPi~y~~~~~~~~~~-~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~y~ 323 (444) ||+|||||..+++.+ +++++|+|+|+|+|||||+|||||++++|++++++++... +..|+..++++++|+|.++|+ T Consensus 241 IPvqyak~~~~~~~~~g~~~sylPlKlN~aGVmPiIFAssll~~P~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~y~ 317 (434) T PRK12907 241 IPIQYAKAVSGNNQYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIAQLFPDSS---VSKWLVANLDFAHPIGMTLYV 317 (434) T ss_pred HHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHCCCCCHHHHHHH T ss_conf 75652676347666567865035664155556389999999999999999857840---889999982789829999999 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CC Q ss_conf 9999999999862379899999999638844762798579999999999999999999999999999999984884--10 Q gi|254780241|r 324 VFIVFFAFFYTAIVFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVP--VS 401 (444) Q Consensus 324 ilii~Fs~f~~~i~~~P~~iAe~L~k~g~~IpGiRPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~~--~~ 401 (444) +++++|||||+++++||||+||||||+|+||||+||||+|++||+|+++|+|++||+||+++|++|.++....+.+ .. T Consensus 318 ~LIi~FsyFyt~i~~nP~eiAenlkK~G~fIPGiRPG~~T~~YL~~vl~rit~~GaifL~~ia~lP~i~~~~~~~~~~~~ 397 (434) T PRK12907 318 GLIVAFTYFYAFIQVNPEQMAENLKKQNGYVPGIRPGKSTEQYVTKILYRLTFIGAIFLGAISILPLVFTKIATLPPSAQ 397 (434) T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE T ss_conf 99999999999982484789999997698588989986579999999989889879999999999999999837886642 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0257999999999999999999999985265643110 Q gi|254780241|r 402 LSGTSLLIIVSVVLDTIVQIQGYLIAQQYEGVFKKSR 438 (444) Q Consensus 402 ~gGTslLI~Vgv~l~~~~qi~a~~~~~~Y~~~~~~~~ 438 (444) +||||+||+|||++||+||+|||+.+|||||++||+| T Consensus 398 ~GgTslLI~VgV~ldt~~Qi~s~l~~~~Y~g~lkk~~ 434 (434) T PRK12907 398 IGGTSLLIIVGVALETMKTLESQLVKRHYKGFIKKAN 434 (434) T ss_pred EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 6132034555759989999999999998677750369 No 3 >CHL00161 secY preprotein translocase subunit SecY; Validated Probab=100.00 E-value=0 Score=903.44 Aligned_cols=413 Identities=38% Similarity=0.643 Sum_probs=381.6 Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHH Q ss_conf 98835878899999999999999850679898739889999873035537889986427702220468735478999999 Q gi|254780241|r 15 ASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYISASI 94 (444) Q Consensus 15 ~~~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyItASI 94 (444) +|.||+||||||++||++++++||+|++||+||+|.+++++.. +++++++++|+|+|||++++|+|+|||+||||||| T Consensus 2 ~~~~k~~elr~kilfTl~il~iyrlG~~IpiPGid~~~~~~~~--~~~~~~~~~~~fsGGal~~~sIFaLGI~PyItASI 79 (417) T CHL00161 2 KQMITKDNLRKRLLTTLGLLLLIRLGTFIPVPGIDHDAFYQNI--SSNPLSNFLNIFSGGGFSTIGLFALGILPYINASI 79 (417) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH--HCCCHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHH T ss_conf 5145449999999999999999997151888983999999887--34639999999706127541799946788999999 Q ss_pred HHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 999998521547864114-6368999998869999999999999999723556762258750479999999999999999 Q gi|254780241|r 95 IVQLIAATVPSLENLKKE-GEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLV 173 (444) Q Consensus 95 i~QLL~~~~P~l~~l~ke-ge~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~~~~~~~~~~~~~~~il~L~aGs~il~ 173 (444) +||||+..+|.++||||| ||+||||+++||||+|+++|++||++++.+++. ...+++..+.+.++++|+|||+++| T Consensus 80 I~QLL~~~~P~L~~l~ke~Ge~Grkki~~~tR~lTl~la~iQs~~~~~~l~~---~~~~~~~~~~~~~vl~LtaGt~~lm 156 (417) T CHL00161 80 IMQLLTKIIPSLEKLQKEEGELGRRKINKLTRYLTLGWALIQSIAISFWLKP---YAFNWNLLLVFEIVLALTTGAMIVM 156 (417) T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 9999998746599864303687899999999999999999999999998778---7458648999999999999999999 Q ss_pred HHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH Q ss_conf 99998740889875203621014657678874333320012321589999999999999999988653323210110121 Q gi|254780241|r 174 WLGEQITMRGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGSISTPLMLLIFSSTVAVIALVIFFERAQRRLLIQYPKRQ 253 (444) Q Consensus 174 wl~e~It~~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~~~~~~~~~l~~~~~~l~vi~~iV~v~~~~rrIPi~y~~~~ 253 (444) |+||+|||||||||+|++|++||++++|+++.+.+.... ++......++.++.++++++++|++|++|||||+|||||. T Consensus 157 WLge~IT~~GIGNG~SliIf~gIv~~~p~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~vV~~~~a~rrIPv~yak~~ 235 (417) T CHL00161 157 WLSELITEKGIGNGASLLIFINIVSGLPKNIKQKISEAN-LSITLISGLLLILLFLITILGIIFLQEGVRKIPIISAKQL 235 (417) T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHECCEEEEEEEHHHH T ss_conf 999899864958881899999999987999999998505-6303899999999999999999742130242334547665 Q ss_pred CCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 16642356431144420000237999999999868888875077772479998875306676316999999999999999 Q gi|254780241|r 254 VGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSSPTWIVGLVDSLGHGRSFYMVLYSVFIVFFAFFY 333 (444) Q Consensus 254 ~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~y~ilii~Fs~f~ 333 (444) .+++.+ ++++|+|+|+|+|||||+|||||++++|++++++.... ...|..+..+.+++++|+|.++|++++++||||| T Consensus 236 ~~~~~~-~~~sylPiKvN~aGVmPiIFAssll~~P~~i~~~~~~~-~~~~~~~~~~~~~~~~~~y~~~y~~LIi~Ft~Fy 313 (417) T CHL00161 236 GKSSSL-ASNSYLPLRLNQGGVMPIIFASALLVLPLYIANLGLLK-ILLPVLYLFLPFKPNKILYWILYFVLILFFSYFY 313 (417) T ss_pred CCCCCC-CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 456656-86412556543445648999999999999999975885-1378999985147887299999999999999999 Q ss_pred HHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHH Q ss_conf 8623798999999996388447627985799999999999999999999999999999999848841--00257999999 Q gi|254780241|r 334 TAIVFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPV--SLSGTSLLIIV 411 (444) Q Consensus 334 ~~i~~~P~~iAe~L~k~g~~IpGiRPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~~~--~~gGTslLI~V 411 (444) +++++||||+||||||+|+||||+||||+|++||+++++|+|++||+||+++|++|++++..++.+. .+||||+||+| T Consensus 314 t~i~~nP~eiAenl~k~G~~IpGiRPG~~T~~yL~~vl~rit~~GaifL~iia~~P~~~~~~~~~~~~~~~ggTslLI~V 393 (417) T CHL00161 314 SSLVLNPKDISENLKKMAVSIPGIRPGKETTKYLEKVLNRLTFLGALFLAFIALLPNIVEFVLNLSIFKGLGATSLLILV 393 (417) T ss_pred HHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH T ss_conf 99716899999999986981789899866899999999999999899999999999999998198622654253556568 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999985265643 Q gi|254780241|r 412 SVVLDTIVQIQGYLIAQQYEGVFK 435 (444) Q Consensus 412 gv~l~~~~qi~a~~~~~~Y~~~~~ 435 (444) ||++||+||+|||+.|||||++++ T Consensus 394 gV~ldt~~qI~s~l~~~~Y~g~l~ 417 (417) T CHL00161 394 GVAIDTTRQIQTYVISNNYENMRD 417 (417) T ss_pred HHHHHHHHHHHHHHHHHHCCHHCC T ss_conf 979989999999999965003119 No 4 >TIGR00967 3a0501s007 preprotein translocase, SecY subunit; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component. . From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) . The chaperone protein SecB is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion . The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains . Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export . Homologs of secY are found in archaebacteria . SecY is also encoded in the chloroplast genome of some algae where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0009306 protein secretion, 0016020 membrane. Probab=100.00 E-value=0 Score=873.14 Aligned_cols=407 Identities=47% Similarity=0.844 Sum_probs=367.5 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC-CHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH Q ss_conf 999999999999998506798987398899998730355-3788998642770222046873547899999999999852 Q gi|254780241|r 24 KSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSA-GIFGLFNMFSGGAVERMAVFSLGIMPYISASIIVQLIAAT 102 (444) Q Consensus 24 ~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~-~~~~~l~~~sGga~~~~sif~LGI~PyItASIi~QLL~~~ 102 (444) |+|++||+++|++||+|+|||+||||.++.++..+++.+ ++++++|+|+||++.++|+|+|||+||||||||||||+++ T Consensus 1 r~r~l~T~~~L~l~R~G~~IP~PG~~~~~~~~~~~~~~~~g~~~~ln~f~Gg~~~~~sifALGI~PYItASIi~QLL~~~ 80 (489) T TIGR00967 1 RERLLFTLGLLVLFRLGTFIPVPGIDAQAFQNSIQQNPSRGIFGLLNTFSGGALGQISIFALGISPYITASIILQLLTGD 80 (489) T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 93799999999999996025777643777766530365751889999850231444354553104378899999999987 Q ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCC-------CCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 1547864-1146368999998869999999999999999-72355-------6762258750479999999999999999 Q gi|254780241|r 103 VPSLENL-KKEGEQGRKVINQYTRYATVLLGILQAYGIA-VGLKN-------GQGIVSDSDYFFVFSTIITLLGGTMFLV 173 (444) Q Consensus 103 ~P~l~~l-~kege~gr~ki~~~tr~ltl~~a~iQs~~~~-~~l~~-------~~~~~~~~~~~~~~~~il~L~aGs~il~ 173 (444) +|+++++ +||||+||||++++|||+|+++|++||.+++ .+.+. ....+.|++..+++.++++|++||+++| T Consensus 81 v~~~~~~~~~ege~GR~K~~~~Try~tl~~A~~Qs~~~~~~~~~~gLf~~~~~~~~~~~~~~~~~~~~~~~Lt~Gs~~~m 160 (489) T TIGR00967 81 VPPLLTLQKKEGEIGRRKINQLTRYLTLILALIQSLGIVATGISPGLFNNMSSGGYVINPGLFFYLLIVIALTTGSMIVM 160 (489) T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 88887405465856699997657999999999999999999863431256556764333348999999999999899999 Q ss_pred HHHHHHHH-CCCCCCCHHHHCCCHHHHHHHHHHHHHHH-----------------------HCCCCC------CHHHHHH Q ss_conf 99998740-88987520362101465767887433332-----------------------001232------1589999 Q gi|254780241|r 174 WLGEQITM-RGIGNGVSLIIFSGIVAGLPSSLVSVLEL-----------------------GRVGSI------STPLMLL 223 (444) Q Consensus 174 wl~e~It~-~GIGnG~SLiI~~gIi~~lp~~l~~~~~~-----------------------~~~~~~------~~~~~l~ 223 (444) ||||+||| ||||||+||+||+||++++|+.+.+.++. ...+.. ......+ T Consensus 161 wl~E~It~G~GiGnGiSl~If~gI~~~iP~~l~~~~~~n~g~G~~y~w~~~~~f~lla~~~~~~~~~~~~~~~~~l~~~~ 240 (489) T TIGR00967 161 WLGEQITEGKGIGNGISLLIFAGIVATIPSALLQTYEVNNGEGIEYEWALIALFHLLAGIQSKVGDLANAFYRAWLSFLL 240 (489) T ss_pred HHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH T ss_conf 99867635812204048999999999989987642015665750200087875123320000114300245788999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCC--CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH Q ss_conf 999999999999988653323210110121166423--564311444200002379999999998688888750777724 Q gi|254780241|r 224 IFSSTVAVIALVIFFERAQRRLLIQYPKRQVGNRMF--QDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSSP 301 (444) Q Consensus 224 ~~~~~l~vi~~iV~v~~~~rrIPi~y~~~~~~~~~~--~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~~ 301 (444) .+.+++++++++||+|+++|||||||||++.+++.+ +++++|+|+|+|||||||||||||++.+|.+++++....... T Consensus 241 ~~~~~~~~~~~vvf~~~~~R~iPi~~ak~~~~~~~~~~~~~~~~lPlKln~aGViPvIFASa~~~~p~~i~~~~~~~~~~ 320 (489) T TIGR00967 241 VLLATVAVIAVVVFVQQARRKIPIQSAKRQGGRRSYERGSQSTYLPLKLNQAGVIPVIFASALLSLPATIAQFLNSNQGS 320 (489) T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEECCEECCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 99999999998875301377875543662034432000345300436873666304899999999999999975202565 Q ss_pred --------------------HHHHHHHHH---CC------CCCCHHHHHH----HHHHHHHHHHHHH-HCCCHHHHHHHH Q ss_conf --------------------799988753---06------6763169999----9999999999986-237989999999 Q gi|254780241|r 302 --------------------TWIVGLVDS---LG------HGRSFYMVLY----SVFIVFFAFFYTA-IVFNPKEAADNL 347 (444) Q Consensus 302 --------------------~~~~~~~~~---~~------~~~~~y~i~y----~ilii~Fs~f~~~-i~~~P~~iAe~L 347 (444) +|..|+.+. ++ +++|+|.++| +++|++|||||++ +++||||+|||| T Consensus 321 nl~~lLG~y~~~G~~~~~a~gg~~~~~~~~~~~~WmWW~~~~~~~~~~~Y~~~m~~lI~~F~~fY~~t~~~NP~~~A~Nl 400 (489) T TIGR00967 321 NLIALLGTYEISGTVNGRAVGGLAWFLNLILSLSWMWWEVLSKPLGIILYIIFMLILIIFFSYFYAETLQLNPEDLAKNL 400 (489) T ss_pred CCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHH T ss_conf 32100220047846795003678888751200670154113316899999999999999977665520344889999999 Q ss_pred HHCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC--CCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 963884476279857-99999999999999999999999999999999848-84--100257999999999999999999 Q gi|254780241|r 348 KKHGGFIPGIRPGDR-TALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTG-VP--VSLSGTSLLIIVSVVLDTIVQIQG 423 (444) Q Consensus 348 ~k~g~~IpGiRPG~~-T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~-~~--~~~gGTslLI~Vgv~l~~~~qi~a 423 (444) ||+|++|||+||||+ |+|||+|+++|+|++||+||+++|++|++++..++ +| ..+||||+||+|||++||++|+|+ T Consensus 401 kk~G~~IPG~RpG~~~T~~yl~~~l~RLt~~Gs~fLg~ia~~P~~~~~~~~~lp~~~~lGGTSlLI~VgVa~~t~~q~~~ 480 (489) T TIGR00967 401 KKQGMFIPGIRPGKEVTEKYLKRVLNRLTFVGSLFLGLIAILPNFLEAIGGVLPQSKGLGGTSLLIVVGVAIDTMKQLES 480 (489) T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 65386438645865799999976633578999999999999999999988642001122248999999999999999999 Q ss_pred HHHHHH--H Q ss_conf 999985--2 Q gi|254780241|r 424 YLIAQQ--Y 430 (444) Q Consensus 424 ~~~~~~--Y 430 (444) |+..++ | T Consensus 481 ~~~~~n~~y 489 (489) T TIGR00967 481 YLISRNSEY 489 (489) T ss_pred HHHHHHCCC T ss_conf 987642059 No 5 >COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Probab=100.00 E-value=0 Score=851.35 Aligned_cols=420 Identities=49% Similarity=0.834 Sum_probs=386.5 Q ss_pred CCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHH Q ss_conf 12588988358788999999999999998506798987398899998730355378899864277022204687354789 Q gi|254780241|r 10 SNLNFASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPY 89 (444) Q Consensus 10 ~~~~~~~~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~Py 89 (444) -...+++.+|.||+|||++||++++++||+|++||+||+|.++..+.++++.. ..++|+|+|||++|+|+|+|||+|| T Consensus 6 ~~~~~~~~~~~~~l~kr~~fT~~~Livyrigs~IPvpGi~~~~~~~~~~~~~~--~~~~n~~~GGal~~~SIfaLGI~Py 83 (436) T COG0201 6 LPEVLSPKFKVPELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNSQRF--LILFNMFSGGALSRGSIFALGIMPY 83 (436) T ss_pred HHHHHCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH--HHHHHHHCCCCCCCCHHHHHCCHHH T ss_conf 67875501024889999999999999999807286898887899988886455--6888986165513464999755889 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCHHHHHHHHHHHH Q ss_conf 999999999985215478641146368999998869999999999999999723556--762258750479999999999 Q gi|254780241|r 90 ISASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNG--QGIVSDSDYFFVFSTIITLLG 167 (444) Q Consensus 90 ItASIi~QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~--~~~~~~~~~~~~~~~il~L~a 167 (444) ||||||||||+...|.++||+||||+||||+|++|||+|+++|++||++++.++.+. .+...+.+..+++.++++|++ T Consensus 84 ITASII~QLL~~~~p~l~~l~k~~e~gR~k~~~~tRyltlvla~iQa~~~~~~~~~~~~~~~~~~~~~~~~~l~il~L~~ 163 (436) T COG0201 84 ITASIIMQLLTVGSPILKKLDKEGEEGRRKIQQYTRYLTLVLAVIQALGVVLGGNNGGSPSDVGNGGIFFYLLIILQLTA 163 (436) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 89999999999877889998734854299999999999999999999999987103577653456513799999999999 Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999987408898752036210146576788743333200123--215899999999999999999886533232 Q gi|254780241|r 168 GTMFLVWLGEQITMRGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGS--ISTPLMLLIFSSTVAVIALVIFFERAQRRL 245 (444) Q Consensus 168 Gs~il~wl~e~It~~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~~~--~~~~~~l~~~~~~l~vi~~iV~v~~~~rrI 245 (444) ||+++|||||+|||||||||+||+|++||++++|+.+.+.++....+. .+....++.++.+++++.++||+|+++||| T Consensus 164 Gt~~lmwLgE~Itk~GIGnGiSLiIfagI~~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~ii~~vvyve~~~r~I 243 (436) T COG0201 164 GTMFLMWLGEQITKRGIGNGISLIIFAGIVASLPSAIFGIIGALPTGALFLSILFLLLLVLLTLAIIFLVVYVEQARRRI 243 (436) T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE T ss_conf 99999999988860484654599999999987489999899998613158889999999999999999999750007886 Q ss_pred HHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHCCCCCCHHHHHH Q ss_conf 1011012116642356431144420000237999999999868888875077772---4799988753066763169999 Q gi|254780241|r 246 LIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSS---PTWIVGLVDSLGHGRSFYMVLY 322 (444) Q Consensus 246 Pi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~y~i~y 322 (444) |+||+||+ .++++++|+|+|+|||||||+|||||++++|.+++++++.+.. ..|..++.+.+.++.|.|+.+| T Consensus 244 PI~y~~~~----~~~g~~s~lPlKln~agvIPvIfassll~~p~~i~~~l~~~~~~~~~~~~~~i~~~l~~~~~~y~~~y 319 (436) T COG0201 244 PIQYAKRQ----SYRGQSSYLPLKLNYAGVIPVIFASSLLLFPSTIAQFLGNGGLAYYLSPLTSISDALSPGSPVYIALY 319 (436) T ss_pred EHHHHHHH----HCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHH T ss_conf 34543544----14786744315752457758999999999999999982777632115634668976067869999999 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 99999999999862379899999999638844762798579999999999999999999999999999999984884100 Q gi|254780241|r 323 SVFIVFFAFFYTAIVFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSL 402 (444) Q Consensus 323 ~ilii~Fs~f~~~i~~~P~~iAe~L~k~g~~IpGiRPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~~~~~ 402 (444) ++++++|||||+++++||||+||||||+|+||||+||||+|+|||+|+++|+|++||+|++++|++|++++...+.+..+ T Consensus 320 ~~lii~Fs~Fy~~i~~np~~~A~~lkksG~~IPGiRpg~~te~yL~rvi~rlt~~Ga~~l~~iailp~l~~~~~~~~~~~ 399 (436) T COG0201 320 VVLIIFFSYFYTEIQFNPEEIAENLKKSGGFIPGIRPGKDTEKYLNRVIPRLTFIGALFLGLIAILPELLGTAGGVPFYF 399 (436) T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 99999999999998329999999999769928884997247999999999999999999999999999999850776033 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 257999999999999999999999985265643 Q gi|254780241|r 403 SGTSLLIIVSVVLDTIVQIQGYLIAQQYEGVFK 435 (444) Q Consensus 403 gGTslLI~Vgv~l~~~~qi~a~~~~~~Y~~~~~ 435 (444) ||||+||+|||++|+++|+|+|+.+++|+++.+ T Consensus 400 gGTslLI~V~V~l~~~~qi~~~l~~~~Y~~~~~ 432 (436) T COG0201 400 GGTSLLIVVGVALDTYEQIEAELLMEKYPGLRR 432 (436) T ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHHCHHHHH T ss_conf 670024006999999999999999851665775 No 6 >PRK12417 secY preprotein translocase subunit SecY; Reviewed Probab=100.00 E-value=0 Score=826.51 Aligned_cols=395 Identities=21% Similarity=0.383 Sum_probs=353.0 Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHH Q ss_conf 88358788999999999999998506798987398899998730355378899864277022204687354789999999 Q gi|254780241|r 16 SFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYISASII 95 (444) Q Consensus 16 ~~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyItASIi 95 (444) ++||+||||||++||++++++||+|++||+||+|.+++.+ +++++++++|+|+|||++|+|+|+|||+|||||||+ T Consensus 2 ~~f~~~eLrkrilfTl~il~iyRlG~~IpiPgi~~~~~~~----~~~~~~~~~~~fsGGal~~~siFaLGI~PYItASII 77 (399) T PRK12417 2 KKFEYKIIYKKILFTCFILFIYILGSNISIPFVSYNDMQG----GDESFFKLAISNMGGNLRTLNIFSLGLGPWMTSMII 77 (399) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH T ss_conf 7430089999999999999999953626899939999964----065699999998521187749999168889999999 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99998521547864114636899999886999999999999999972355676225875047999999999999999999 Q gi|254780241|r 96 VQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVWL 175 (444) Q Consensus 96 ~QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~~~~~~~~~~~~~~~il~L~aGs~il~wl 175 (444) ||||+. .+++++++++|++.+++|||+|+++|++||++++.++.+.. ..+....+.++++|+|||+++||+ T Consensus 78 ~QLLt~-----~~~~~~~~~~~~~~~~~~rylTv~la~iQs~~~~~~~~~~~----~~~~~~~~~~~~~L~aGt~~lmWL 148 (399) T PRK12417 78 LMLFSY-----RKRDKYMKQTSEEQHYRERILTLIIAVIQSLAVIHSYPSKE----GVSQTNILLTTLILVTGTYLLVWL 148 (399) T ss_pred HHHHHC-----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC----CCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 999806-----22346567403332322489999999999999998720336----765027999999999999999999 Q ss_pred HHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC Q ss_conf 99874088987520362101465767887433332001232158999999999999999998865332321011012116 Q gi|254780241|r 176 GEQITMRGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGSISTPLMLLIFSSTVAVIALVIFFERAQRRLLIQYPKRQVG 255 (444) Q Consensus 176 ~e~It~~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~~~~~~~~~l~~~~~~l~vi~~iV~v~~~~rrIPi~y~~~~~~ 255 (444) ||+||||||| |+|++|++||++++|+++.+.++... ....+.....++++.++|++|++|||||+||+++..+ T Consensus 149 gE~IT~kGIG-G~SliI~~gIi~~~p~~~~~~~~~~~------~~~~l~~~~~~v~i~~iv~~~~a~rrIPv~~~~~~~~ 221 (399) T PRK12417 149 ADLNARYGIG-GPMPIVMVSMIKSIFNDIMEYIDASH------IVIALLILLTLIALYLLLFIERSEYRIPYNDIMNHNR 221 (399) T ss_pred HHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHEEEEEEEEEEEEEHHHHHCC T ss_conf 8999834667-60599999999987999999999888------9999999999999998401361688876212434325 Q ss_pred CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 64235643114442000023799999999986888887507777-24799988753066763169999999999999998 Q gi|254780241|r 256 NRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSS-SPTWIVGLVDSLGHGRSFYMVLYSVFIVFFAFFYT 334 (444) Q Consensus 256 ~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~y~i~y~ilii~Fs~f~~ 334 (444) ++. .+|+|+|+|+|||||+|||||++++|++++++++... ...+..++.+++++++|+|.++|++++++|||||+ T Consensus 222 ~~~----~sylPlKvN~aGVmPiIFAssll~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~iLIi~FtyFyt 297 (399) T PRK12417 222 FKM----YSYLSIKVNPAGGIPIMYSMSLFVFPQYIIILILSIFPNNKGISDDMPMLSFGSPVGISVYLVLQMLLSYFFS 297 (399) T ss_pred CCC----CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 786----2156675245553189999999999999999951347774389999997189984799999999999999999 Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHH Q ss_conf 6237989999999963884476279857999999999999999999999999999999998488--41002579999999 Q gi|254780241|r 335 AIVFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGV--PVSLSGTSLLIIVS 412 (444) Q Consensus 335 ~i~~~P~~iAe~L~k~g~~IpGiRPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~--~~~~gGTslLI~Vg 412 (444) ++++||+|+||||||+|+||||+||||+|++||+|+++|+|++||+||+++|++|.++....+. ...+||||+||+|| T Consensus 298 ~i~~nP~~iAenLkK~G~fIpGIRPG~~T~~YL~~vl~rit~~GaifLaiia~lP~~~~~~~~~~~~~~~ggtslLI~Vg 377 (399) T PRK12417 298 FVLINTKQISKRMLKSGNYIEGIYPGKDTERYLNKIARRFCWFGGFFVAVIIGIPLYFTLFVPHLLTEIYFSGQFMVFVG 377 (399) T ss_pred HHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEEE T ss_conf 95118999999999779858898998647999999999999977999999999889999962420343332347178774 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999998526564 Q gi|254780241|r 413 VVLDTIVQIQGYLIAQQYEGVF 434 (444) Q Consensus 413 v~l~~~~qi~a~~~~~~Y~~~~ 434 (444) |++||+||+|||+.||||||++ T Consensus 378 Valdt~~Qies~l~~~~Y~gfl 399 (399) T PRK12417 378 MSFNIADEIRTYLYFDKYKPLL 399 (399) T ss_pred EEHHHHHHHHHHHHHHHCCCCC T ss_conf 3061899999999996427559 No 7 >PRK08568 preprotein translocase subunit SecY; Reviewed Probab=100.00 E-value=0 Score=776.79 Aligned_cols=394 Identities=24% Similarity=0.338 Sum_probs=335.0 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHH Q ss_conf 83587889999999999999985067989873988999987303553788998642770222046873547899999999 Q gi|254780241|r 17 FSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYISASIIV 96 (444) Q Consensus 17 ~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyItASIi~ 96 (444) -.|+++||||++||++++++||+|+|||+||||. ++.|.++++|+|+||+. .|+|+|||+||||||||| T Consensus 20 p~~~~~Lr~kilfTl~~l~vyrigs~IP~pGi~~---------~~~~~~~~~~~~~gga~--~SifaLGI~PyItASIIm 88 (466) T PRK08568 20 PERHVPFKEKLKWTAIVLILYFILTNIPLYGISQ---------ASQDLFELLRIIFAGAF--GTLLTLGIGPIVTAGIIL 88 (466) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------CCCCHHHHHHHHHCCHH--HHHHHHCCHHHHHHHHHH T ss_conf 9999988889999999999999805788999795---------75577899999866604--389993959999999999 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99985215478641146368999998869999999999999999723556762258750479999999999999999999 Q gi|254780241|r 97 QLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVWLG 176 (444) Q Consensus 97 QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~~~~~~~~~~~~~~~il~L~aGs~il~wl~ 176 (444) |||+ .|++++||||||+||||+|++|||+|+++|++||.+++.+..............+.+.++++|++||+++||+| T Consensus 89 QLL~--~~~l~~l~~~geeGR~ki~~~tR~ltv~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~ii~~L~aGt~~lmwLg 166 (466) T PRK08568 89 QLLV--GSKLINLDLSDPEDRAKFQGLQKLLAIVMIALEAAPFVLGGAFGPPTPLLAAGGIALLIFLQLALGGILIILLD 166 (466) T ss_pred HHHH--HCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9987--33076665437546999999999999999999999999988504666552048899999999999999999999 Q ss_pred HHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCC----------------CC------------HHHHHHHHHHH Q ss_conf 987408898752036210146576788743333200123----------------21------------58999999999 Q gi|254780241|r 177 EQITMRGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGS----------------IS------------TPLMLLIFSST 228 (444) Q Consensus 177 e~It~~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~~~----------------~~------------~~~~l~~~~~~ 228 (444) |+|||||||||+||+|++||++++++++.+......... .. ....++.+..+ T Consensus 167 E~Ite~GIGNGiSLiIfagI~~~l~~~~~~~~~~~~~~~~~g~ip~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~li~~ 246 (466) T PRK08568 167 ELVSKWGIGSGISLFIAAGVSQQIFVGLFNWLTVPGGNLPVGFIPALIYAITSGNLTLAILLGGSGRNFLLPDLLGLIAT 246 (466) T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 88751181630899999999999888742533345554400389999999997301157999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCC--------C Q ss_conf 99999999886533232101101211664235643114442000023799999999986888887507777--------2 Q gi|254780241|r 229 VAVIALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSS--------S 300 (444) Q Consensus 229 l~vi~~iV~v~~~~rrIPi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~--------~ 300 (444) ++++..++|+|+++||||++|+| ++++++|+|+|+|+|||||+||||++++.|.++++++.... . T Consensus 247 v~v~~~vvy~~~~~~~IPv~~~~-------~~g~~~~iPlKln~aGViPiIFAssll~~~~~~~~~~~~~~~~~~~~~~~ 319 (466) T PRK08568 247 ILVFLLVVYLESMRVEIPLAHGR-------VRGARGRYPLKFIYVSVLPVILVRALQANIQLFGQLLQSIGIPILGTYSG 319 (466) T ss_pred HHHHHEEEEEECCEEEECCCCCC-------CCCCCCEECEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCC T ss_conf 99885167640114651123343-------47877501314304464469999999986999999988603056653057 Q ss_pred HHHHHHHHHHCCCCC------------CHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHCCCCCCCCCCCHHH-HHH Q ss_conf 479998875306676------------3169999999999999998623-79899999999638844762798579-999 Q gi|254780241|r 301 PTWIVGLVDSLGHGR------------SFYMVLYSVFIVFFAFFYTAIV-FNPKEAADNLKKHGGFIPGIRPGDRT-ALH 366 (444) Q Consensus 301 ~~~~~~~~~~~~~~~------------~~y~i~y~ilii~Fs~f~~~i~-~~P~~iAe~L~k~g~~IpGiRPG~~T-~~y 366 (444) .++..++..++++.. .+|.++|++++++|+|||+.++ +||||+||||||+|++|||+|||++| ++| T Consensus 320 ~~~~~gi~~y~~p~~~~~~~~~~p~~~~~Y~~~~~~l~i~Fs~fy~~i~~~nP~~iAenLkk~G~~IPGiRpg~~t~e~y 399 (466) T PRK08568 320 GQPVSGLVYYLSPPNSIYDWIADPLRAVIYALFMIVLSILFAIFWVETAGLDAKDQARQLQNSGMQIPGFRRSPKVIEKV 399 (466) T ss_pred CCCCHHHHHHHCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHH T ss_conf 78617899985787634566523057899999999999999999999827898999999998698165689996409999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999848841002579999999999999999999999852656431 Q gi|254780241|r 367 IDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQIQGYLIAQQYEGVFKK 436 (444) Q Consensus 367 L~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~~~~~gGTslLI~Vgv~l~~~~qi~a~~~~~~Y~~~~~~ 436 (444) |+|+++|+|++||+|++++|++|++++.++ ||||+||+|||++||++|+|+|+.||+|+++.+. T Consensus 400 L~~vi~rlT~~Gaifl~~ia~lp~~~~~~~------gGTslLI~VgValdt~~qi~s~~~~~~Y~~l~~~ 463 (466) T PRK08568 400 LKRYIPPVTVIGGAIVGLLAVLADLLGALG------GGTGLLLTVSIVYQYYEEIAREQLMEMYPLLRRF 463 (466) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 998899999999999999999999998730------2688999999999999999999999880899987 No 8 >pfam00344 SecY eubacterial secY protein. Probab=100.00 E-value=0 Score=653.10 Aligned_cols=334 Identities=50% Similarity=0.817 Sum_probs=306.6 Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCCCCCC Q ss_conf 46873547899999999999852154786411463689999988699999999999999997235567----62258750 Q gi|254780241|r 80 AVFSLGIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQ----GIVSDSDY 155 (444) Q Consensus 80 sif~LGI~PyItASIi~QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~----~~~~~~~~ 155 (444) |+|+|||+|||||||+||||+.+.|+++|+|||||+||||+|++|||+|+++|++||++++.++.+.. ....+.+. T Consensus 1 Slf~LGI~P~ItAsIi~QLL~~~~p~l~~l~~~g~~gr~k~~~~tr~ltl~~a~iqa~~~~~~~~~~~~~~~~~~~~~~~ 80 (340) T pfam00344 1 SIFALGIGPYITASIIMQLLTVVGPKLEKLDKEGEEGRKKIQQYTRYLTLVLALIQAIGIVLGLGSYGAFSNGIVLGVGF 80 (340) T ss_pred CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH T ss_conf 94450668999999999999988677999853287669999999999999999999999999986147655554356309 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHH Q ss_conf 479999999999999999999987408898752036210146576788743333200123--215899999999999999 Q gi|254780241|r 156 FFVFSTIITLLGGTMFLVWLGEQITMRGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGS--ISTPLMLLIFSSTVAVIA 233 (444) Q Consensus 156 ~~~~~~il~L~aGs~il~wl~e~It~~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~~~--~~~~~~l~~~~~~l~vi~ 233 (444) .+.+.++++|++|++++||+||+|||||+|||+|++|++||++++|+++.+.+....... .+....++.+..++++++ T Consensus 81 ~~~~~~vl~L~~Gs~i~~wL~e~It~~GiGnGiSLiI~~gI~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~i~~ 160 (340) T pfam00344 81 LNLLLIVLQLTAGTMFLMWLGELITKYGIGNGISLIIFAGIVSSIPWAIINLFSLLSSGGGLLSILYLLLLLIATLAVIL 160 (340) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999974387776189999999999999999999987326661028999999999999999 Q ss_pred HHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC Q ss_conf 99988653323210110121166423564311444200002379999999998688888750777724799988753066 Q gi|254780241|r 234 LVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSSPTWIVGLVDSLGH 313 (444) Q Consensus 234 ~iV~v~~~~rrIPi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~ 313 (444) ++||+|+++||||+||+|+..++ .+++++|+|+|+||+||||+||||+++++|+++++++.+..++.+..++.+++++ T Consensus 161 ~~v~~~~~~~~IPi~~~~~~~~~--~~~~~~~lPiKln~agvmPiIfassll~~p~~i~~~l~~~~~~~~~~~l~~~~~~ 238 (340) T pfam00344 161 LVVYLQEARRRIPIQYAKRVVGG--GRGQSSYLPIKLNYAGVIPIIFASSLLANPQTIAQFLGSSFPLWPVSGLAYYLPI 238 (340) T ss_pred HHHHHCCCEEEEEEEEHHHHCCC--CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC T ss_conf 99985003578765330001346--7886415446523444438999999999999999996304740079999998387 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 76316999999999999999862379899999999638844762798579999999999999999999999999999999 Q gi|254780241|r 314 GRSFYMVLYSVFIVFFAFFYTAIVFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALI 393 (444) Q Consensus 314 ~~~~y~i~y~ilii~Fs~f~~~i~~~P~~iAe~L~k~g~~IpGiRPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~ 393 (444) +.++|.++|.+++++|+|||+++++||||+||||+|+|++|||+||||+|++||+|+++|+|++||++++++|++|++++ T Consensus 239 ~~~~y~~~~~~lii~Fs~f~~~~~~~p~~iAe~l~k~g~~IpGiRpG~~T~~yL~k~i~~~t~~G~~~l~~la~~p~~~~ 318 (340) T pfam00344 239 GSPVYILFYIVLIIFFSYFYTAIGFNPKDIAENLKKSGGFIPGIRPGKSTEKYLNRVIPRLTFIGAIFLGLLAVLPDLLG 318 (340) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 74899999999999999999996578899999999869861484898579999999999999999999999999999999 Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 98488410025799999999999999 Q gi|254780241|r 394 AVTGVPVSLSGTSLLIIVSVVLDTIV 419 (444) Q Consensus 394 ~~~~~~~~~gGTslLI~Vgv~l~~~~ 419 (444) ..+ .+||||+||+|||++||+| T Consensus 319 ~~~----~~gGtslLI~V~v~~~~~~ 340 (340) T pfam00344 319 ALG----GFGGTSLLIAVGVALDTYE 340 (340) T ss_pred HHH----CCCHHHHHHHHHHHHHHCC T ss_conf 842----7527767888786785039 No 9 >TIGR02920 secY_rel translocase, putative; InterPro: IPR014269 Members of this entry are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY.. Probab=100.00 E-value=0 Score=542.21 Aligned_cols=396 Identities=26% Similarity=0.453 Sum_probs=331.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH Q ss_conf 89999999999999985067989873988999987303553788998642770222046873547899999999999852 Q gi|254780241|r 23 LKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYISASIIVQLIAAT 102 (444) Q Consensus 23 l~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyItASIi~QLL~~~ 102 (444) +-||++||+++++||.+|++||+||+|.. +++++.+++.++.+..+++||++++.|+|+||++|++||+|++||++.. T Consensus 2 ~~Kk~lfT~fil~IY~lG~~I~iPfv~~s--~~~~~~~~~~f~~~~~~~~GGnl~~l~IFSlGL~P~m~sMiil~L~s~~ 79 (403) T TIGR02920 2 IYKKILFTCFILIIYVLGSYIPIPFVEVS--KKDMKGKKNSFFKLAIANTGGNLSTLSIFSLGLGPWMSSMIILQLFSFK 79 (403) T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCC--HHHCCCCCCCHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHCCC T ss_conf 00588999999999997155555751032--4341444540888878771664015115564213688999999984431 Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHH Q ss_conf 15478641146368999998869999999999999999723556-762258750479999-9999999999999999874 Q gi|254780241|r 103 VPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNG-QGIVSDSDYFFVFST-IITLLGGTMFLVWLGEQIT 180 (444) Q Consensus 103 ~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~-~~~~~~~~~~~~~~~-il~L~aGs~il~wl~e~It 180 (444) +-+|-....+|.-+.-+|+||+++|++||++++..+.+. +++..+ ..+.+ ++.|+|||+++.||||+++ T Consensus 80 -----~~~g~~~~s~~~~~~~~~~LTLiI~~IQ~~~~~~~~~~~r~~~~~~----~~~L~n~liL~tGt~l~VWL~d~N~ 150 (403) T TIGR02920 80 -----KSDGLSAQSQKEQQYRERVLTLIIAIIQSLAVIHSFTNKRNGLSDI----NMLLLNILILVTGTLLLVWLADLNA 150 (403) T ss_pred -----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf -----0046443478999999999999999999999999876644114589----9999999999998999998983435 Q ss_pred HCCCCCCCHHHHCCCHHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCC Q ss_conf 088987520362101465-7678874333320012321589999999999999999988653323210110121166423 Q gi|254780241|r 181 MRGIGNGVSLIIFSGIVA-GLPSSLVSVLELGRVGSISTPLMLLIFSSTVAVIALVIFFERAQRRLLIQYPKRQVGNRMF 259 (444) Q Consensus 181 ~~GIGnG~SLiI~~gIi~-~lp~~l~~~~~~~~~~~~~~~~~l~~~~~~l~vi~~iV~v~~~~rrIPi~y~~~~~~~~~~ 259 (444) +||+| |+-.+++++++. ++|+-..+.++..+.+..+.....+..+.+++......++|++|+|||+. + .+.... T Consensus 151 ~YGig-G~~~ivl~S~~~G~~~nI~~~~~e~~~~~~~~~~~I~L~i~l~l~~~f~L~f~e~~~Yri~v~--~--~~~~~~ 225 (403) T TIGR02920 151 KYGIG-GSMPIVLVSILKGAINNIPSDVFELLQTSYIWILLIALLILLLLVALFLLAFIERAEYRIPVN--D--ISLHNR 225 (403) T ss_pred CCCCC-CCHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE--C--CCCCCC T ss_conf 57655-448898877874023412678775312341289999999999999999999886410010120--3--365321 Q ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 564311444200002379999999998688888750777724-7999887530667631699999999999999986237 Q gi|254780241|r 260 QDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSSP-TWIVGLVDSLGHGRSFYMVLYSVFIVFFAFFYTAIVF 338 (444) Q Consensus 260 ~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~y~i~y~ilii~Fs~f~~~i~~ 338 (444) .+..||+|+|+||||.||.|.+.|++++|+++..+++.-.++ ..++...+.++.++|.+..+|.++.++|+||++++++ T Consensus 226 ~~~~sYl~~klNpAG~m~~M~~~s~l~~p~~~~~l~g~~F~~~s~i~~~~~~f~f~~~~Gi~iYl~~~~~Ls~~f~fv~i 305 (403) T TIGR02920 226 LNLKSYLPIKLNPAGGMAYMVVMSLLMLPKYIIILLGRIFPNSSDINSLVKEFSFSSPVGILIYLILQMLLSYFFTFVNI 305 (403) T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 13552341001511333899999999999999999998723773400022503427741779999999999999997528 Q ss_pred CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHH Q ss_conf 989999999963884476279857999999999999999999999999999999998488--410025799999999999 Q gi|254780241|r 339 NPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGV--PVSLSGTSLLIIVSVVLD 416 (444) Q Consensus 339 ~P~~iAe~L~k~g~~IpGiRPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~--~~~~gGTslLI~Vgv~l~ 416 (444) ||||+||+++|||.||||+||||||+|||+|.+.|++++||++.+++++.|.+..-..+- ....=.+-++..++.... T Consensus 306 n~~~~sk~f~ksG~Yi~gi~PG~~T~ryLn~~~~~~~~fG~~~~a~~~g~Plyf~Lf~~~L~~~~~~~~~~~m~~~~~~~ 385 (403) T TIGR02920 306 NPKEKSKSFRKSGNYIPGIKPGKDTQRYLNRLARRICWFGGVLVAILLGIPLYFALFVPHLLTEAYIPGQFIMITGMSFN 385 (403) T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHH T ss_conf 85899999852788178988996068898889899988889998899876234321561110002221343454223210 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 999999999998526564 Q gi|254780241|r 417 TIVQIQGYLIAQQYEGVF 434 (444) Q Consensus 417 ~~~qi~a~~~~~~Y~~~~ 434 (444) ..||+++++..++|+.++ T Consensus 386 I~d~i~~~l~~~~Y~~~l 403 (403) T TIGR02920 386 IADEIRAILYFDKYKPLL 403 (403) T ss_pred HHHHHHHHHHHCCCCCCC T ss_conf 255676442000345469 No 10 >PTZ00219 Sec61 protein; Provisional Probab=100.00 E-value=0 Score=458.63 Aligned_cols=382 Identities=19% Similarity=0.265 Sum_probs=313.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 58788999999999999998506798987398899998730355378899864277022204687354789999999999 Q gi|254780241|r 19 RAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYISASIIVQL 98 (444) Q Consensus 19 ~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyItASIi~QL 98 (444) |+..+++|++||...+++|.+++++|++|+. .+++.|.+.+++...+ .+++|+++|||+|.+|||++||| T Consensus 23 ~~v~f~~Kl~wT~~~l~iylv~s~iPLyGi~--------~~~~~Dpf~~~R~i~A--s~~GTLmeLGIgPIVTa~ii~QL 92 (472) T PTZ00219 23 RKVPFKEMLLWTGVSLFVFLVCCQIPLYGAV--------TSKSSDPFYWMRVILA--SNRGTLMELGISPIVTSSMVMQL 92 (472) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC--------CCCCCCHHHHHHHHHC--CCCCCHHHHCCHHHHHHHHHHHH T ss_conf 8897677799999999999998087645446--------8888885999999981--57776788484378899999999 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 98521547864114636899999886999999999999999972355676225875047999999999999999999998 Q gi|254780241|r 99 IAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVWLGEQ 178 (444) Q Consensus 99 L~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~~~~~~~~~~~~~~~il~L~aGs~il~wl~e~ 178 (444) |++. ++.|+|.+.++||+.+|..||.++++++++||.+++.+-.+++ ..+.+....+.+++||+.|++++++|||. T Consensus 93 L~G~--kiI~vd~~~~edr~lfq~~QKllaii~~~~eA~~~V~sG~yg~--~~~~g~~~~~liilQL~~~giivilLDEl 168 (472) T PTZ00219 93 LAGS--KIIDVDQSLKEDRDLFQGAQKLLGLLITLGEAVAYVISGMYGD--ISEIGTFKAILIILQLFFAGVVVILLDEL 168 (472) T ss_pred HHHC--CEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8418--8155389986789999999999999999999999971033578--00233799999999999999999999999 Q ss_pred HHH-CCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCC------CCCCHH-----------------------HHHHHHHHH Q ss_conf 740-88987520362101465767887433332001------232158-----------------------999999999 Q gi|254780241|r 179 ITM-RGIGNGVSLIIFSGIVAGLPSSLVSVLELGRV------GSISTP-----------------------LMLLIFSST 228 (444) Q Consensus 179 It~-~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~------~~~~~~-----------------------~~l~~~~~~ 228 (444) ++| ||+|+|+||+|.+|++.++.|...+....... |..-.. .-+.-+..+ T Consensus 169 v~KG~G~GSGisLFIaa~v~~~i~w~~fsp~~~~~~~g~e~eGa~~~~~~~l~~~~~~~~~l~~af~r~~lpnl~~li~T 248 (472) T PTZ00219 169 LQKGYGLGSGISLFIATNICETILWKAFSPTTINTDKGTEFEGALISLFYCLFTKSNKISALKEAFYRSHAPNVTNLLAT 248 (472) T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 86366603589999999999999998648530368888765333999999998077527789988742257419999999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-------- Q ss_conf 999999998865332321011012116642356431144420000237999999999868888875077772-------- Q gi|254780241|r 229 VAVIALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSS-------- 300 (444) Q Consensus 229 l~vi~~iV~v~~~~rrIPi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~-------- 300 (444) ++++..+||+|..+.+||+.++| ++|.+..+|+|+.|+++||+||++++++....+.+.+....+ T Consensus 249 i~vf~~vvYlq~~rVeiPi~s~r-------~RG~~~~yPIkLlYtS~iPvIl~~al~sni~~~s~~l~~~~~~~~~~~lL 321 (472) T PTZ00219 249 ALVFLIVIYLQGFRVDLSVKYQS-------VRGQQGTYPIKLFYTSNIPIILQTALVSNLYFFSQLLYRRFKNNLLVNIL 321 (472) T ss_pred HHHHHHHHHHHCCEEEEEECCCC-------CCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCC T ss_conf 99999999871356998632465-------68766422067610067519999999999999999999757864000003 Q ss_pred -----------HHHHHHHHHHCCCCC--------CHHHHHH----HHHHHHHHHHHHHHC-CCHHHHHHHHHHCCCCCCC Q ss_conf -----------479998875306676--------3169999----999999999998623-7989999999963884476 Q gi|254780241|r 301 -----------PTWIVGLVDSLGHGR--------SFYMVLY----SVFIVFFAFFYTAIV-FNPKEAADNLKKHGGFIPG 356 (444) Q Consensus 301 -----------~~~~~~~~~~~~~~~--------~~y~i~y----~ilii~Fs~f~~~i~-~~P~~iAe~L~k~g~~IpG 356 (444) ...+.++..+++|.. |++.++| ...+.+|+.+|.++. .+|||+|||++++|..||| T Consensus 322 G~~~~~~~~g~~~Pv~Gl~yYlspP~s~~~~~~dPi~~iiy~~f~i~~~~~Fs~~Wve~sG~s~kdvAkql~~~g~~ipG 401 (472) T PTZ00219 322 GQWQETDSHGTSIPIGGIAYYISPPNSFKDIVNDPIHTLVYISFVLVSCAVFSKTWIEVSGSSAKDVAKQLRDQQIGMVG 401 (472) T ss_pred EEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC T ss_conf 12024577888663330589964996788886364478999999999999999999996098989999999974897798 Q ss_pred CCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 27985-799999999999999999999999999999999848841002579999999999999999999999 Q gi|254780241|r 357 IRPGD-RTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQIQGYLIA 427 (444) Q Consensus 357 iRPG~-~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~~~~~gGTslLI~Vgv~l~~~~qi~a~~~~ 427 (444) .|..+ .-+|.|+|+++.+|++||++++++|+..++++... +||++|+.|++++++++++..+..+ T Consensus 402 ~R~~~~~~~k~L~ryIP~aa~~Gg~~vG~Lav~Ad~lG~~G------sGtGiLLaV~iiy~~yE~~~~E~~~ 467 (472) T PTZ00219 402 YRDSPPSLTKVFNRYIPTAAAFGGMCIGALTILADFLGALG------SGTGILLAVTIIYQYYEMLVKEQER 467 (472) T ss_pred CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC------CHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 55674569999845564999999999999999999855876------4277999999999999999999986 No 11 >KOG1373 consensus Probab=100.00 E-value=0 Score=364.43 Aligned_cols=385 Identities=20% Similarity=0.295 Sum_probs=311.8 Q ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 35878899999999999999850679898739889999873035537889986427702220468735478999999999 Q gi|254780241|r 18 SRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYISASIIVQ 97 (444) Q Consensus 18 ~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyItASIi~Q 97 (444) .++.+.|+|++||.+.+++|.++++||++|+. ++.++|.+.+++... |.+|.++++|||.|.+|+|.+|| T Consensus 24 erk~pf~eK~~wt~i~~~iflv~~QiPLyGi~--------ssdt~DP~yw~Rvil--asnrgTLMelGisPivtSglimQ 93 (476) T KOG1373 24 ERKLPFREKLLWTAISLLIFLVCSQIPLYGIM--------SSDTADPFYWMRVIL--ASNRGTLMELGISPIVTSGLIMQ 93 (476) T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC--------CCCCCCHHHHHHHHH--HCCCCCHHHHCCCHHHHHHHHHH T ss_conf 10284899999999999999998305414544--------677777089999998--04876332216653667889999 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99852154786411463689999988699999999999999997235567622587504799999999999999999999 Q gi|254780241|r 98 LIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVWLGE 177 (444) Q Consensus 98 LL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~~~~~~~~~~~~~~~il~L~aGs~il~wl~e 177 (444) +|++. ++.|.+-+-++||.-+|..||.+++++++.|+..++.+-.++. ..|-+....+.++++|.....+++.||| T Consensus 94 lLag~--kiIeV~~~~~~DR~Lfn~aQKl~~iii~vgqa~~yV~tG~yG~--p~dLg~~~clLii~QL~~Agiiv~lLdE 169 (476) T KOG1373 94 LLAGS--KIIEVNFNIKEDRELFNGAQKLFAIIITVGQAVVYVMTGMYGS--PSDLGVGICLLIILQLFFAGIIVILLDE 169 (476) T ss_pred HHCCC--CEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--HHHCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 97148--1898468865559999999999999999998898755045689--2442415789999999985689999999 Q ss_pred HHHH-CCCCCCCHHHHCCCHHHHHHHHHHHHHHH------HCCCCCCHHH-----------------------HHHHHHH Q ss_conf 8740-88987520362101465767887433332------0012321589-----------------------9999999 Q gi|254780241|r 178 QITM-RGIGNGVSLIIFSGIVAGLPSSLVSVLEL------GRVGSISTPL-----------------------MLLIFSS 227 (444) Q Consensus 178 ~It~-~GIGnG~SLiI~~gIi~~lp~~l~~~~~~------~~~~~~~~~~-----------------------~l~~~~~ 227 (444) +++| ||+|||+||+|.+|||.++.|.-.+.-.. ...|+.-... .+.-+.. T Consensus 170 llqKGyGlgSGislfiatnice~ivwkaFsptti~tGrg~efeGAvIalfhll~tr~~k~~al~eAF~RqnLPNl~nl~a 249 (476) T KOG1373 170 LLQKGYGLGSGISLFIATNICESIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRKDKVRALREAFYRQNLPNLTNLLA 249 (476) T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCEECHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHH T ss_conf 99836686764143658889989999743864886278853005799999999853007999999997753616899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH----- Q ss_conf 999999999886533232101101211664235643114442000023799999999986888887507777247----- Q gi|254780241|r 228 TVAVIALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSSPT----- 302 (444) Q Consensus 228 ~l~vi~~iV~v~~~~rrIPi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~~~----- 302 (444) +++++++++|+|..+.++|+.++| ++|+.+.+|+|+.|.++||||+.|++.+....+.|++....+.+ T Consensus 250 tvlif~iViYlQgfRVeLPirS~r-------~RG~~~~yPIKL~YTsn~pIilqsalvsni~~isqll~~k~~~n~~v~l 322 (476) T KOG1373 250 TVLIFLIVIYLQGFRVELPIRSTR-------ARGQYGSYPIKLFYTSNMPIILQSALVSNIFVISQLLYKKFPGNFLVRL 322 (476) T ss_pred HHHHHHHHHHCCCEEEEEEECCHH-------CCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 999999985111318983202012-------0566786324776527838999999999999999999865787669988 Q ss_pred --------------HHHHHHHHCCCC--------CCHHHHHHHHHHH----HHHHHHHHHC-CCHHHHHHHHHHCCCCCC Q ss_conf --------------999887530667--------6316999999999----9999998623-798999999996388447 Q gi|254780241|r 303 --------------WIVGLVDSLGHG--------RSFYMVLYSVFIV----FFAFFYTAIV-FNPKEAADNLKKHGGFIP 355 (444) Q Consensus 303 --------------~~~~~~~~~~~~--------~~~y~i~y~ilii----~Fs~f~~~i~-~~P~~iAe~L~k~g~~Ip 355 (444) ...++..++.|. .|+..++|.+++. +|+--|.++. -+|+|+|++||+++..++ T Consensus 323 lG~w~~~~~~~~~~p~~glsyy~~pp~s~~~~~~dPi~~i~Yi~fml~sca~FsktWievSgsSarDvAkqlKeQ~mvm~ 402 (476) T KOG1373 323 LGVWEDSEGGGRSMPVSGLSYYITPPESFGEALQDPIHFLVYIVFMLGSCALFSKTWIEVSGSSARDVAKQLKEQQMVMR 402 (476) T ss_pred EEEEECCCCCCCCCCCCCCEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEC T ss_conf 87542379985223156505744884777778628526789999999999998868999709997999999874665535 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 627985799999999999999999999999999999999848841002579999999999999999999999852 Q gi|254780241|r 356 GIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQIQGYLIAQQY 430 (444) Q Consensus 356 GiRPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~~~~~gGTslLI~Vgv~l~~~~qi~a~~~~~~Y 430 (444) |+|.. .+.+-|+|+++...++||.+++.+.+..++++... +||+++..|.+++++++..+-+...+.+ T Consensus 403 G~RE~-n~~keLnr~IPtAA~~Gg~~igaltV~~d~lgaiG------sgtgIlla~t~iyqy~E~~~kE~~~~~g 470 (476) T KOG1373 403 GHRET-NMAKELNRYIPTAAAFGGLCIGALTVLADLLGAIG------SGTGILLAVTIIYQYFEIFAKEQAQEGG 470 (476) T ss_pred CCCHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC------CCCEEEEEHHHHHHHHHHHHHHHHHCCC T ss_conf 73025-69999986446788761269989999998754026------7751787458799999999999861178 No 12 >pfam10559 Plug_translocon Plug domain of Sec61p. The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side.The plug is unlikely to be important for sealing the translocation pore in yeast but it plays a role in stabilising Sec61p during translocon formation. The domain runs from residues 52-74. Probab=86.40 E-value=0.12 Score=29.60 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=26.4 Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCC Q ss_conf 99985067989873988999987303553788998642770 Q gi|254780241|r 35 IVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGA 75 (444) Q Consensus 35 ~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga 75 (444) ++|.++++||++|++ .++++|.+.++++..+++ T Consensus 1 ~lYli~s~iPLyGi~--------~~~~~D~f~~~r~i~As~ 33 (35) T pfam10559 1 LLYLVLSQIPLYGLV--------SSDSSDPFYWLRAILASN 33 (35) T ss_pred CEEEEEECCCCCEEE--------CCCCCCCHHHHHHHHHHC T ss_conf 979998456210362--------278888489999987513 No 13 >pfam05697 Trigger_N Bacterial trigger factor protein (TF). In the E. coli cytosol, a fraction of the newly synthesized proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide Probab=80.18 E-value=2 Score=21.84 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=24.3 Q ss_pred CCCHHHHHHHHHH------CCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 3798999999996------388447627985799999999999 Q gi|254780241|r 337 VFNPKEAADNLKK------HGGFIPGIRPGDRTALHIDYVLTR 373 (444) Q Consensus 337 ~~~P~~iAe~L~k------~g~~IpGiRPG~~T~~yL~~v~~r 373 (444) .++++++.+.+.+ ..+.|||+||||.-..-+++-... T Consensus 18 ~i~~~~~~~~~~~~~~~~~k~~~ipGFRkGKvP~~ii~k~~g~ 60 (144) T pfam05697 18 EVPAEEVEEAVDKALKELAKKVKIPGFRKGKVPRSVVKKRYGK 60 (144) T ss_pred EECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH T ss_conf 9989999999999999998108899978998899999999879 No 14 >pfam03248 Rer1 Rer1 family. RER1 family protein are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex. Probab=80.15 E-value=4.2 Score=19.79 Aligned_cols=114 Identities=22% Similarity=0.326 Sum_probs=56.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC--CCHHHH-HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHH Q ss_conf 6763169999999999999998623--798999-99999638844762798579999999999999999999999-9999 Q gi|254780241|r 313 HGRSFYMVLYSVFIVFFAFFYTAIV--FNPKEA-ADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVC-VCIF 388 (444) Q Consensus 313 ~~~~~y~i~y~ilii~Fs~f~~~i~--~~P~~i-Ae~L~k~g~~IpGiRPG~~T~~yL~~v~~rit~~Ga~~l~~-la~~ 388 (444) ....+|++.|++=|...+-|-.+++ .||+-- .|+-.+.|...|- |.+++=+-++++. +-..+|=+..-+. +|.+ T Consensus 45 ~~~g~YiV~Y~LgIylLnlfi~FLtPk~dp~l~~~~e~~~~g~~LP~-~~~~EFRPFiRrL-PEFkFW~s~tka~~ia~~ 122 (175) T pfam03248 45 LVQGWYVVSYALGIYLLNLFLAFLTPKFDPELEQEDEDVEEGPSLPT-RNDDEFRPFIRRL-PEFKFWYSATRATVIALF 122 (175) T ss_pred HHCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHH T ss_conf 83432520398999999999998396778310001024445778898-7765447632477-088999999999999999 Q ss_pred HHHHHHHHCCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999848841002579999---999999999999999999852656 Q gi|254780241|r 389 PEALIAVTGVPVSLSGTSLLI---IVSVVLDTIVQIQGYLIAQQYEGV 433 (444) Q Consensus 389 p~~~~~~~~~~~~~gGTslLI---~Vgv~l~~~~qi~a~~~~~~Y~~~ 433 (444) .++. ..+++|..-- +|. ++=.++.-.|||+ ++...+|-++ T Consensus 123 ~TfF-~~fDiPVFWP---iLl~Yfi~Lf~~TmkrqI~-HMiKYrYvPf 165 (175) T pfam03248 123 CTFF-SFFDVPVFWP---ILLMYFIVLFFLTMRRQIK-HMIKYKYVPF 165 (175) T ss_pred HHHH-HHCCCCHHHH---HHHHHHHHHHHHHHHHHHH-HHHHHCCCCC T ss_conf 9988-7528860478---9999999999999999999-9985487664 No 15 >TIGR00814 stp serine transporter; InterPro: IPR004694 The Hydroxy/Aromatic Amino Acid Permease (HAAAP) family includes well characterised aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This group is specific for hydroxy amino acid transporters and includes the serine permease, SdaC and threonine permease, TdcC, of Escherichia coli.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane. Probab=77.03 E-value=5.2 Score=19.20 Aligned_cols=20 Identities=15% Similarity=0.079 Sum_probs=15.4 Q ss_pred HHCCHHHHHHHHHHHHHHHH Q ss_conf 73547899999999999852 Q gi|254780241|r 83 SLGIMPYISASIIVQLIAAT 102 (444) Q Consensus 83 ~LGI~PyItASIi~QLL~~~ 102 (444) .-|+.|.+.++|+.==++-. T Consensus 30 ~~G~w~l~~maiia~P~Ty~ 49 (419) T TIGR00814 30 LGGLWVLVLMAIIAYPLTYF 49 (419) T ss_pred CCCHHHHHHHHHHHHHHHHH T ss_conf 24589999999999999999 No 16 >PRK01490 tig trigger factor; Provisional Probab=73.30 E-value=3.2 Score=20.58 Aligned_cols=12 Identities=8% Similarity=0.476 Sum_probs=6.9 Q ss_pred HHCCCCCCCCCC Q ss_conf 850679898739 Q gi|254780241|r 38 RFGTYIPLPSID 49 (444) Q Consensus 38 rlg~~IPlPGid 49 (444) .+...+-+||.. T Consensus 34 ~~~k~~~ipGFR 45 (435) T PRK01490 34 KLAKTVRIPGFR 45 (435) T ss_pred HHHCCCCCCCCC T ss_conf 986528889989 No 17 >pfam04923 Ninjurin Ninjurin. Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation and function in some tissues. Probab=72.54 E-value=6.7 Score=18.48 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=25.3 Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999998521-547864114636899999886999999999 Q gi|254780241|r 89 YISASIIVQLIAATV-PSLENLKKEGEQGRKVINQYTRYATVLLGI 133 (444) Q Consensus 89 yItASIi~QLL~~~~-P~l~~l~kege~gr~ki~~~tr~ltl~~a~ 133 (444) .+..||++|++.+.. --..+++-+.++.+++.+.+--+.|.+..+ T Consensus 51 Li~~SivLQv~vgilli~~~~~ni~~~~~~~~~~~lNn~~~~~vfi 96 (116) T pfam04923 51 LISVSLVLQVVVGVLLIIISRYNLNNVEEQRRLDRLNNLTTIGVFI 96 (116) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999763246578889999998799999999 No 18 >TIGR00945 tatC twin arginine-targeting protein translocase TatC; InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the Escherichia coli mttB gene (TATC) . A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the Escherichia coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon , .. Probab=66.79 E-value=4.7 Score=19.47 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=21.9 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 87889999999999999985067989 Q gi|254780241|r 20 AKDLKSRIVFTIIALIVYRFGTYIPL 45 (444) Q Consensus 20 ~~el~~Kil~Tl~il~iyrlg~~IPl 45 (444) ..|||+|+++.+..+.+-.++++.=. T Consensus 5 L~ELR~Rll~~~~~~~~~~~~~f~~~ 30 (226) T TIGR00945 5 LEELRKRLLISLIAVLVAFVISFYFA 30 (226) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 89999999999999999999999999 No 19 >TIGR00858 bioF 8-amino-7-oxononanoate synthase; InterPro: IPR004723 8-amino-7-oxononanoate synthase (2.3.1.47 from EC) is involved in biotin biosynthesis. Synonym(s): AONS, 8-amino-7-ketopelargonate synthase, 7-keto-8-amino-pelargonic acid synthetase, 7-KAP synthetase; GO: 0008710 8-amino-7-oxononanoate synthase activity, 0009102 biotin biosynthetic process. Probab=62.59 E-value=4.5 Score=19.62 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=19.3 Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHH Q ss_conf 899999999638844762798579 Q gi|254780241|r 340 PKEAADNLKKHGGFIPGIRPGDRT 363 (444) Q Consensus 340 P~~iAe~L~k~g~~IpGiRPG~~T 363 (444) .=++||.|+++|.+++.||| || T Consensus 328 al~~a~~L~~~G~~v~AIRP--PT 349 (378) T TIGR00858 328 ALALAEELQEQGIFVGAIRP--PT 349 (378) T ss_pred HHHHHHHHHHCCCEEECCCC--CC T ss_conf 99999999877947910258--88 No 20 >TIGR00915 2A0602 RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; InterPro: IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 is involved in toxin production and resistance processes.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane. Probab=61.39 E-value=11 Score=17.07 Aligned_cols=146 Identities=19% Similarity=0.322 Sum_probs=84.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC--CHHHCCCCCC--CC---------CCCEEEEEECCC--HHH------HHHHHHH Q ss_conf 9999999999998865332321011--0121166423--56---------431144420000--237------9999999 Q gi|254780241|r 225 FSSTVAVIALVIFFERAQRRLLIQY--PKRQVGNRMF--QD---------DVSYLPLKLNTA--GVV------PSIFASS 283 (444) Q Consensus 225 ~~~~l~vi~~iV~v~~~~rrIPi~y--~~~~~~~~~~--~~---------~~sylPiKin~a--Gvm------PiIfass 283 (444) +..-+++==.+|.||+-||=+.-.. ||--..+++- .| ...++|+.+-.. |.| .|..|++ T Consensus 402 LAIGLlVDDAIVVVEnVER~m~~e~L~P~EAt~~~M~qi~GA~vgi~~VL~aVf~P~AFFgG~~G~iY~QFsiTIv~am~ 481 (1058) T TIGR00915 402 LAIGLLVDDAIVVVENVERIMAEEGLPPKEATKKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMA 481 (1058) T ss_pred HHHHHEEECEEEEEECEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH T ss_conf 87741022518998231577605878848999998876326788888999877654331787735014658999999999 Q ss_pred H------HHHHHHHHHHHCCC-------CCHHHHHHHHHHCC--------------CCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 9------98688888750777-------72479998875306--------------676316999999999999999862 Q gi|254780241|r 284 L------LLLPATIMGFIDVS-------SSPTWIVGLVDSLG--------------HGRSFYMVLYSVFIVFFAFFYTAI 336 (444) Q Consensus 284 l------l~~p~~i~~~~~~~-------~~~~~~~~~~~~~~--------------~~~~~y~i~y~ilii~Fs~f~~~i 336 (444) | ..-|..++.++.+. ....+..|+...|+ .....|+++|++++..-.|+|..+ T Consensus 482 LSvlvALilTPALCAt~LK~~~kg~h~~~k~GFFgWFNr~F~~~~~~Y~~~V~~~l~~~~r~l~~Y~ll~~g~~~Lf~r~ 561 (1058) T TIGR00915 482 LSVLVALILTPALCATMLKPIEKGEHHEKKGGFFGWFNRMFDRSTNGYENVVGKILKRRLRYLLVYVLLVGGMVFLFVRL 561 (1058) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEC T ss_conf 99999998458889987156667887000456413677766553201226899986057504356777898576420007 Q ss_pred --CCCHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHH Q ss_conf --3798999999996388447627-985799999999999999 Q gi|254780241|r 337 --VFNPKEAADNLKKHGGFIPGIR-PGDRTALHIDYVLTRVTV 376 (444) Q Consensus 337 --~~~P~~iAe~L~k~g~~IpGiR-PG~~T~~yL~~v~~rit~ 376 (444) .|=|+| ++|.++--|+ |--.|+++=++++..++- T Consensus 562 PtsFLP~E------DQG~~~~~vQ~P~G~t~e~T~~Vl~~v~~ 598 (1058) T TIGR00915 562 PTSFLPEE------DQGVLMTIVQLPAGATAERTQKVLAQVEK 598 (1058) T ss_pred CCCCCCCC------CCCEEEEEEECCCCCCHHHHHHHHHHHHH T ss_conf 74448887------86069999986898655789999999999 No 21 >pfam07330 DUF1467 Protein of unknown function (DUF1467). This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown. Probab=58.41 E-value=13 Score=16.75 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=32.9 Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 6388447627985799999999999999999999999999 Q gi|254780241|r 349 KHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIF 388 (444) Q Consensus 349 k~g~~IpGiRPG~~T~~yL~~v~~rit~~Ga~~l~~la~~ 388 (444) +.|..+||--||-|..-.+.|....-|.+.++.-+++..+ T Consensus 31 e~~~vv~Gt~~gAP~~p~l~kK~~~TT~is~vi~~i~~~i 70 (85) T pfam07330 31 EDGEVVPGTDPGAPVNPRLKRKALWTTIISAVIWALIYLI 70 (85) T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 3577567889999976038999999999999999999999 No 22 >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR); InterPro: IPR005291 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are integral membrane proteins and they are involved in the transport of chloride ions. Many of these proteins are the cystis fibrosis transmembrane conductor regulators (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.; GO: 0005254 chloride channel activity, 0006811 ion transport, 0016020 membrane. Probab=58.19 E-value=13 Score=16.73 Aligned_cols=91 Identities=16% Similarity=0.297 Sum_probs=53.2 Q ss_pred HHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH Q ss_conf 99986237989999999963884476279857999--9999999999999999999999999999984884100257999 Q gi|254780241|r 331 FFYTAIVFNPKEAADNLKKHGGFIPGIRPGDRTAL--HIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLL 408 (444) Q Consensus 331 ~f~~~i~~~P~~iAe~L~k~g~~IpGiRPG~~T~~--yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~~~~~gGTslL 408 (444) |-|-+.+ +++=||+++.-. +=|++ |+++--...=||+|+|+.+++++|+-+..-.-+---|+..|-- T Consensus 276 YcWEe~M---E~iI~~iRQ~El--------~LTRK~a~~RYF~SsafFFSg~~Vv~~svvPyAl~~gI~LRrIFTT~Syc 344 (1534) T TIGR01271 276 YCWEEAM---EKIIENIRQDEL--------KLTRKVAYVRYFSSSAFFFSGFFVVFLSVVPYALIKGIILRRIFTTISYC 344 (1534) T ss_pred ECHHHHH---HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH T ss_conf 1148899---999876312345--------54423210112335889999999999987558875510333567789999 Q ss_pred HHH------------HHHHHHH---HHHHHHHHHHHHHH Q ss_conf 999------------9999999---99999999985265 Q gi|254780241|r 409 IIV------------SVVLDTI---VQIQGYLIAQQYEG 432 (444) Q Consensus 409 I~V------------gv~l~~~---~qi~a~~~~~~Y~~ 432 (444) |+. -..+|+. ++|+-++..+.|+. T Consensus 345 ~VLRMtvTRQ~P~aiQ~WYDsLg~i~KI~dfL~K~EyK~ 383 (1534) T TIGR01271 345 IVLRMTVTRQFPSAIQTWYDSLGAITKIQDFLQKEEYKT 383 (1534) T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEE T ss_conf 999988753150478888778999999998624464126 No 23 >TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative; InterPro: IPR011744 This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme .. Probab=51.72 E-value=16 Score=16.06 Aligned_cols=57 Identities=28% Similarity=0.401 Sum_probs=41.0 Q ss_pred CHHHHHHH--HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHH Q ss_conf 85799999--999999999999999999---9999999998488------410025799999999999 Q gi|254780241|r 360 GDRTALHI--DYVLTRVTVVGAGYLVCV---CIFPEALIAVTGV------PVSLSGTSLLIIVSVVLD 416 (444) Q Consensus 360 G~~T~~yL--~~v~~rit~~Ga~~l~~l---a~~p~~~~~~~~~------~~~~gGTslLI~Vgv~l~ 416 (444) |++..|-| +|-.+|-.++|=...+++ ..+|++++...|+ |..|+=|=.||+|||.+- T Consensus 21 g~k~~RKl~Ar~~~~Rs~W~GlgMfGliGWsvAIPTLlG~A~GiWlD~hyPs~fSWTLtmli~Gv~~G 88 (100) T TIGR02230 21 GDKEERKLKARKDADRSVWLGLGMFGLIGWSVAIPTLLGVALGIWLDKHYPSSFSWTLTMLIVGVVVG 88 (100) T ss_pred CCHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH T ss_conf 84033447753078600003125753888999988899998733211468987038999999999874 No 24 >COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones] Probab=50.20 E-value=7.8 Score=18.08 Aligned_cols=14 Identities=29% Similarity=0.280 Sum_probs=8.7 Q ss_pred HHHHHHHHHCCCCC Q ss_conf 99999999638844 Q gi|254780241|r 341 KEAADNLKKHGGFI 354 (444) Q Consensus 341 ~~iAe~L~k~g~~I 354 (444) ++...+++.+|... T Consensus 315 ~~~~~~l~~~~~~~ 328 (441) T COG0544 315 KQALQQLQQQGIDS 328 (441) T ss_pred HHHHHHHHHCCCCH T ss_conf 99999988626524 No 25 >cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes. Probab=48.19 E-value=18 Score=15.71 Aligned_cols=14 Identities=21% Similarity=0.043 Sum_probs=4.9 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999987 Q gi|254780241|r 166 LGGTMFLVWLGEQI 179 (444) Q Consensus 166 ~aGs~il~wl~e~I 179 (444) ++..++--=|++.| T Consensus 94 ~G~~YL~~tL~~~I 107 (333) T cd05135 94 VGMPHLHEPLLPEI 107 (333) T ss_pred HHHHHHHHHHHHHH T ss_conf 88999999999999 No 26 >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein; InterPro: IPR011918 This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins .. Probab=44.86 E-value=21 Score=15.39 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=22.8 Q ss_pred HHHHCCCCCCHHHHHHHHHHH----HHHHHHHHHCC---CHHHHHHHHHHC Q ss_conf 875306676316999999999----99999986237---989999999963 Q gi|254780241|r 307 LVDSLGHGRSFYMVLYSVFIV----FFAFFYTAIVF---NPKEAADNLKKH 350 (444) Q Consensus 307 ~~~~~~~~~~~y~i~y~ilii----~Fs~f~~~i~~---~P~~iAe~L~k~ 350 (444) +...++.+..-=+++|.++.= -.|--|.++|= =.+.+.|=|+.. T Consensus 268 ~aG~mSaG~Lg~Fv~YA~~vAgs~g~LSEVwGElQrAaGAaERl~ELL~~~ 318 (576) T TIGR02204 268 LAGKMSAGELGQFVLYAVMVAGSIGALSEVWGELQRAAGAAERLIELLQAK 318 (576) T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 247778454899999999999889899999999998531689999985357 No 27 >PRK10517 magnesium-transporting ATPase MgtA; Provisional Probab=44.26 E-value=21 Score=15.33 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=19.1 Q ss_pred HHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9998488-41002579999999999999999999999852 Q gi|254780241|r 392 LIAVTGV-PVSLSGTSLLIIVSVVLDTIVQIQGYLIAQQY 430 (444) Q Consensus 392 ~~~~~~~-~~~~gGTslLI~Vgv~l~~~~qi~a~~~~~~Y 430 (444) +..+++. +...+--..++.+...+=..-|+.-....|+| T Consensus 858 ~~~~~~~~~lp~~~~~~l~~i~~~~~~~~e~~K~~~~rr~ 897 (900) T PRK10517 858 LASYLQLQALPLSYFPWLVAILAGYMTLTQLVKGFYSRRY 897 (900) T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECC T ss_conf 7875167138889999999999999999999999840002 No 28 >TIGR02876 spore_yqfD sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown .. Probab=43.49 E-value=15 Score=16.27 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=32.1 Q ss_pred CCCCCHHHHHHHHHHHHHH-HHHH-H--HC----CCHHHHHHHHHHCCCCCCCCC Q ss_conf 6676316999999999999-9998-6--23----798999999996388447627 Q gi|254780241|r 312 GHGRSFYMVLYSVFIVFFA-FFYT-A--IV----FNPKEAADNLKKHGGFIPGIR 358 (444) Q Consensus 312 ~~~~~~y~i~y~ilii~Fs-~f~~-~--i~----~~P~~iAe~L~k~g~~IpGiR 358 (444) +++-.+|+.++++.++++| +.|. + +. ..|.+|+++|+++|.. ||++ T Consensus 84 r~~~~~G~L~f~~~~~~lS~fiW~IdvrI~g~~~~~~~~i~~~L~~~G~k-~Gv~ 137 (406) T TIGR02876 84 RPGILIGILLFLAIVYLLSTFIWKIDVRITGVKGETEYEIRKELKEMGIK-PGVK 137 (406) T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHCCCC-CCCC T ss_conf 50076689999999998617558999997279997789999999855875-6832 No 29 >cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3. Probab=41.58 E-value=23 Score=15.07 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=6.7 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999874 Q gi|254780241|r 165 LLGGTMFLVWLGEQIT 180 (444) Q Consensus 165 L~aGs~il~wl~e~It 180 (444) +++-.++--=|++.|. T Consensus 89 ~~G~~YL~~tL~~~I~ 104 (313) T cd05394 89 IVGKHYLKVTLKPVLD 104 (313) T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9889999999999999 No 30 >TIGR01522 ATPase-IIA2_Ca calcium-transporting P-type ATPase, PMR1-type; InterPro: IPR006413 This family describes the P-type ATPase responsible for translocating calcium ions across the golgi membrane of fungi and animals , , and is of particular importance in the sarcoplasmic reticulum of skeletal and cardiac muscle in vertebrates . The calcium P-type ATPases have been characterised as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump represented by IPR006408 from INTERPRO. ; GO: 0005388 calcium-transporting ATPase activity, 0006816 calcium ion transport, 0016021 integral to membrane. Probab=41.30 E-value=15 Score=16.27 Aligned_cols=89 Identities=20% Similarity=0.382 Sum_probs=58.1 Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH-HHHHHCCC--------CHHHHHHHHCCCCHHHHHHHHHCC Q ss_conf 883587889999999999999985067989873988999-98730355--------378899864277022204687354 Q gi|254780241|r 16 SFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYS-KAFQSKSA--------GIFGLFNMFSGGAVERMAVFSLGI 86 (444) Q Consensus 16 ~~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~-~~~~~~~~--------~~~~~l~~~sGga~~~~sif~LGI 86 (444) +--=+++|-+|++.+.++|++-=+--|+ ..++ +.--.... =||+++|+++--+ +.=|+|++|+ T Consensus 720 ~~ilt~~l~~k~l~sA~iIv~gT~~vF~-------~~m~eDg~vt~RDTTMTFTCFVFFDMFNALAcRs-~TKSvFeiG~ 791 (856) T TIGR01522 720 DKILTKDLLKKVLVSAVIIVVGTLLVFV-------KEMQEDGVVTARDTTMTFTCFVFFDMFNALACRS-ETKSVFEIGF 791 (856) T ss_pred CCCCCHHHHHHHHHHHEEEEEEEEEEEE-------EEHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHC-CCCCEEEECC T ss_conf 8637889999998720223564354766-------1033167858888865100110323555675330-7853465124 Q ss_pred HH------HHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 78------999999999998521547864114 Q gi|254780241|r 87 MP------YISASIIVQLIAATVPSLENLKKE 112 (444) Q Consensus 87 ~P------yItASIi~QLL~~~~P~l~~l~ke 112 (444) -- =+-+||+=|+++.-+|+||+.=|. T Consensus 792 fSNrMF~yAvG~Sl~GQl~vvY~pplQ~vFqT 823 (856) T TIGR01522 792 FSNRMFNYAVGGSLIGQLLVVYVPPLQSVFQT 823 (856) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH T ss_conf 02258999999999999998734756640221 No 31 >pfam08006 DUF1700 Protein of unknown function (DUF1700). This family contains many hypothetical bacterial proteins and two putative membrane proteins. Probab=37.52 E-value=27 Score=14.67 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=6.3 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999999 Q gi|254780241|r 165 LLGGTMFLVWLGE 177 (444) Q Consensus 165 L~aGs~il~wl~e 177 (444) ...+..+..|.+- T Consensus 102 ~~~~~il~l~i~~ 114 (181) T pfam08006 102 ILILLVLSLWIIG 114 (181) T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999999 No 32 >cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern. Probab=34.21 E-value=30 Score=14.33 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=6.9 Q ss_pred HHHCCHHHHHHHHHHHHH Q ss_conf 873547899999999999 Q gi|254780241|r 82 FSLGIMPYISASIIVQLI 99 (444) Q Consensus 82 f~LGI~PyItASIi~QLL 99 (444) -..=|.|--.-+=+-|+| T Consensus 44 ~e~~VLp~~~y~~l~~lL 61 (395) T cd05137 44 EENFVLPSNNYEKLEELL 61 (395) T ss_pred CCEEEECHHHHHHHHHHH T ss_conf 422750655422899998 No 33 >cd05395 RasGAP_RASA4 Ras GTPase activating-like 4 protein (RASAL4), also known as Ca2+ -promoted Ras inactivator (CAPRI), is a member of the GAP1 family. Members of the GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL4, like RASAL, is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to a receptor-mediated elevation in the concentration of intracellular free Ca2+ ([Ca2+]i). However, unlike RASAL, RASAL4 does not sense oscillations in [Ca2+]i. Probab=33.88 E-value=30 Score=14.30 Aligned_cols=16 Identities=19% Similarity=0.492 Sum_probs=6.8 Q ss_pred HHHHHHHHHHCCCHHH Q ss_conf 9999999862379899 Q gi|254780241|r 327 VFFAFFYTAIVFNPKE 342 (444) Q Consensus 327 i~Fs~f~~~i~~~P~~ 342 (444) ++|=-|+.--.+||+- T Consensus 203 FiFLRFfcPAILsPkL 218 (337) T cd05395 203 FLCLRFFSPAIMSPKL 218 (337) T ss_pred HHHHHHHHHHHCCHHH T ss_conf 9999996267459776 No 34 >TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases , . However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity . It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ and other members of this family turned out to be erroneous , .; GO: 0009024 tagatose-6-phosphate kinase activity, 0019402 galactitol metabolic process. Probab=33.28 E-value=9.9 Score=17.42 Aligned_cols=14 Identities=43% Similarity=0.714 Sum_probs=11.4 Q ss_pred HHHHHCCCCCCCCC Q ss_conf 99985067989873 Q gi|254780241|r 35 IVYRFGTYIPLPSI 48 (444) Q Consensus 35 ~iyrlg~~IPlPGi 48 (444) ..|.+||-+|+||= T Consensus 164 p~YVIGTEVPvPGG 177 (430) T TIGR02810 164 PVYVIGTEVPVPGG 177 (430) T ss_pred CCEEEEEEECCCCC T ss_conf 50365102248878 No 35 >PRK08470 adenylosuccinate lyase; Provisional Probab=27.63 E-value=39 Score=13.63 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=22.2 Q ss_pred HHHHHHHHCCCHHHHHHHHHHCCCCCCC Q ss_conf 9999986237989999999963884476 Q gi|254780241|r 329 FAFFYTAIVFNPKEAADNLKKHGGFIPG 356 (444) Q Consensus 329 Fs~f~~~i~~~P~~iAe~L~k~g~~IpG 356 (444) +.....-+.+||+.+.+||...+++|-- T Consensus 327 ~~~vl~~L~V~~~rM~~NL~~t~gli~s 354 (442) T PRK08470 327 LNNVIENLVVYPENMMKNLNLTGGLVFS 354 (442) T ss_pred HHHHHCCCEECHHHHHHHHHHHCCHHHH T ss_conf 9987603788689999999986682799 No 36 >TIGR00115 tig trigger factor; InterPro: IPR005215 The trigger factor is found in several prokaryotes, and is involved in protein export. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. It acts as a chaperone by maintaining the newly synthesised protein in an open conformation. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity .; GO: 0015031 protein transport. Probab=27.60 E-value=21 Score=15.29 Aligned_cols=32 Identities=13% Similarity=0.082 Sum_probs=18.0 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88447627985799999999999999999999 Q gi|254780241|r 351 GGFIPGIRPGDRTALHIDYVLTRVTVVGAGYL 382 (444) Q Consensus 351 g~~IpGiRPG~~T~~yL~~v~~rit~~Ga~~l 382 (444) ...|||+|+||-=..-.+.-..|.-+.-++-- T Consensus 41 ~v~I~GFR~GKVP~~l~~qr~~~AEL~~~~~q 72 (475) T TIGR00115 41 KVKIDGFRKGKVPRNLVEQRYGKAELLASIKQ 72 (475) T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 00358635788786999854116899999999 No 37 >pfam05313 Pox_P21 Poxvirus P21 membrane protein. The P21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localize on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that P21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene). Probab=27.41 E-value=39 Score=13.61 Aligned_cols=12 Identities=50% Similarity=0.545 Sum_probs=4.8 Q ss_pred HHHHHHHCCCCC Q ss_conf 999874088987 Q gi|254780241|r 175 LGEQITMRGIGN 186 (444) Q Consensus 175 l~e~It~~GIGn 186 (444) ++-||...|=|| T Consensus 104 l~~qi~~~~~~~ 115 (190) T pfam05313 104 LSMQIINPGNGN 115 (190) T ss_pred HHHHEECCCCCC T ss_conf 987204688876 No 38 >TIGR01373 soxB sarcosine oxidase, beta subunit family; InterPro: IPR006278 These sequences represent the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) forms that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process. Probab=26.79 E-value=25 Score=14.88 Aligned_cols=10 Identities=20% Similarity=0.335 Sum_probs=6.1 Q ss_pred CCCHHHHHHH Q ss_conf 0002379999 Q gi|254780241|r 271 NTAGVVPSIF 280 (444) Q Consensus 271 n~aGvmPiIf 280 (444) -+-|..|++= T Consensus 304 aQrG~l~~~e 313 (407) T TIGR01373 304 AQRGNLPILE 313 (407) T ss_pred ECCCCHHHHH T ss_conf 0128807899 No 39 >pfam10151 DUF2359 Uncharacterized conserved protein (DUF2359). This is a 450 amino acid region of a family of proteins conserved from insects to humans. The mouse protein, Q8BM55, is annotated as being a putative Vitamin K-dependent carboxylation gamma-carboxyglutamic (GLA) domain containing protein, but this could not be confirmed. The function is not known. Probab=25.69 E-value=42 Score=13.41 Aligned_cols=43 Identities=26% Similarity=0.243 Sum_probs=18.0 Q ss_pred HHHHHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999985215478--64114636899999886999999999999 Q gi|254780241|r 94 IIVQLIAATVPSLE--NLKKEGEQGRKVINQYTRYATVLLGILQA 136 (444) Q Consensus 94 Ii~QLL~~~~P~l~--~l~kege~gr~ki~~~tr~ltl~~a~iQs 136 (444) |.+|++....|++- ++.|.-|--|.--|+-.+-|++.+|+.|+ T Consensus 5 i~LQai~~~~Pki~t~NLak~~~Lr~S~QNR~~~cLsILWAlGQa 49 (469) T pfam10151 5 ICIQAVLQDKPKIVTSNLDKYLELLRSHQSRPKKCLTIMWALGQA 49 (469) T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC T ss_conf 999999636938788617889999986515625379999981356 No 40 >pfam07438 DUF1514 Protein of unknown function (DUF1514). This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown. Probab=24.90 E-value=43 Score=13.32 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=19.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 79999999999999999999999852 Q gi|254780241|r 405 TSLLIIVSVVLDTIVQIQGYLIAQQY 430 (444) Q Consensus 405 TslLI~Vgv~l~~~~qi~a~~~~~~Y 430 (444) .-+||+.|..-|-.+++||...++.| T Consensus 11 I~LLI~lssnS~~~~ei~AL~Y~N~Y 36 (66) T pfam07438 11 ILLLICLSSNSDRAREIQALRYINDY 36 (66) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999998321689999999999999 No 41 >PRK07380 adenylosuccinate lyase; Provisional Probab=24.55 E-value=44 Score=13.28 Aligned_cols=87 Identities=13% Similarity=0.073 Sum_probs=41.0 Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 43114442000023799999999986888887507------777247999887530667631699999999999999986 Q gi|254780241|r 262 DVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFID------VSSSPTWIVGLVDSLGHGRSFYMVLYSVFIVFFAFFYTA 335 (444) Q Consensus 262 ~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~------~~~~~~~~~~~~~~~~~~~~~y~i~y~ilii~Fs~f~~~ 335 (444) -+|-+|=|-||....-+.=.+..+ +......+. ......|- ..+...+..+.. ....+ --......- T Consensus 261 GSStMPhKrNPi~~E~i~~lar~~--r~~~~~~l~~~~~~hERD~~~s~---~Er~~lp~~~~~-~~~~l-~~~~~ll~~ 333 (431) T PRK07380 261 GSSAMPHKRNPIRSERLSGLARVL--RSYVVAALENVALWHERDISHSS---VERVMLPDCSIL-LHFML-REMTDLVKN 333 (431) T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCCHHHH---HHHHHHHHHHHH-HHHHH-HHHHHHHCC T ss_conf 128878562858899999999988--87578899750886067824345---478678899999-99999-999998606 Q ss_pred HCCCHHHHHHHHHHCCCCCC Q ss_conf 23798999999996388447 Q gi|254780241|r 336 IVFNPKEAADNLKKHGGFIP 355 (444) Q Consensus 336 i~~~P~~iAe~L~k~g~~Ip 355 (444) +.+||+.+.+||...+++|- T Consensus 334 L~V~~~~M~~Nl~~~~gli~ 353 (431) T PRK07380 334 LGVYPENMRRNMNIYGGVVF 353 (431) T ss_pred CEECHHHHHHHHHHHCCHHH T ss_conf 88979999999988278789 No 42 >KOG3802 consensus Probab=24.47 E-value=44 Score=13.27 Aligned_cols=14 Identities=21% Similarity=0.411 Sum_probs=8.4 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999998740 Q gi|254780241|r 168 GTMFLVWLGEQITM 181 (444) Q Consensus 168 Gs~il~wl~e~It~ 181 (444) --++-=||.|-=+. T Consensus 263 KPLL~KWLeEAes~ 276 (398) T KOG3802 263 KPLLEKWLEEAESR 276 (398) T ss_pred HHHHHHHHHHHHCC T ss_conf 79999999998603 No 43 >pfam12263 DUF3611 Protein of unknown function (DUF3611). This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important. Probab=24.20 E-value=45 Score=13.23 Aligned_cols=78 Identities=15% Similarity=0.288 Sum_probs=44.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH---HH Q ss_conf 763169999999999999998623798999999996388447627985-79999999999999999999999999---99 Q gi|254780241|r 314 GRSFYMVLYSVFIVFFAFFYTAIVFNPKEAADNLKKHGGFIPGIRPGD-RTALHIDYVLTRVTVVGAGYLVCVCI---FP 389 (444) Q Consensus 314 ~~~~y~i~y~ilii~Fs~f~~~i~~~P~~iAe~L~k~g~~IpGiRPG~-~T~~yL~~v~~rit~~Ga~~l~~la~---~p 389 (444) +..++.....+++.+|+.||++-- .+++|+|++. =|..||.| +|.+-|+.- --+...| .+++++.. .- T Consensus 56 ~~gl~la~~glv~l~~Si~~~fry---~rlg~~L~~~---~~~~rP~r~~~~r~lr~G-l~~nLvG-ml~allG~qa~vG 127 (183) T pfam12263 56 GIGLFLTIIGLIALGFSIFFAFRY---TRLGRRLRNP---DPAKRPSRADTVRLLRLG-LIINLLG-MFLALIGAQATVG 127 (183) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCC---CCCCCCCHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHH T ss_conf 089999999999999999999889---9999985558---887899889999999999-9999999-9999999999999 Q ss_pred HHHHHHHCCC Q ss_conf 9999984884 Q gi|254780241|r 390 EALIAVTGVP 399 (444) Q Consensus 390 ~~~~~~~~~~ 399 (444) .++......| T Consensus 128 ~L~~Kalsqp 137 (183) T pfam12263 128 ILLAKALSQP 137 (183) T ss_pred HHHHHHHCCC T ss_conf 9999997378 No 44 >TIGR00707 argD acetylornithine and succinylornithine aminotransferases; InterPro: IPR004636 This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from Escherichia coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (2.6.1.11 from EC), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism . Members of this family may also act on ornithine, like ornithine aminotransferase (2.6.1.13 from EC) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (2.6.1.17 from EC, DapC, an enzyme of lysine biosynthesis) . ; GO: 0008483 transaminase activity, 0006525 arginine metabolic process. Probab=21.86 E-value=31 Score=14.28 Aligned_cols=15 Identities=40% Similarity=0.842 Sum_probs=11.4 Q ss_pred HHHHH-CCCCCCCHHH Q ss_conf 98740-8898752036 Q gi|254780241|r 177 EQITM-RGIGNGVSLI 191 (444) Q Consensus 177 e~It~-~GIGnG~SLi 191 (444) |.+|- ||+|||..+= T Consensus 250 Di~T~AKgLGgG~PiG 265 (402) T TIGR00707 250 DIITLAKGLGGGVPIG 265 (402) T ss_pred HHHHHHHHHHCCCHHH T ss_conf 3875405552782022 No 45 >cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A. Probab=21.77 E-value=50 Score=12.93 Aligned_cols=15 Identities=27% Similarity=0.140 Sum_probs=6.0 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 999999999999874 Q gi|254780241|r 166 LGGTMFLVWLGEQIT 180 (444) Q Consensus 166 ~aGs~il~wl~e~It 180 (444) ++..++--=|++.|+ T Consensus 90 ~G~~YL~~tL~~~I~ 104 (310) T cd05134 90 AGMHYLQVTLKPIID 104 (310) T ss_pred HHHHHHHHHHHHHHH T ss_conf 828999999999999 No 46 >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] Probab=21.17 E-value=38 Score=13.69 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=11.3 Q ss_pred HHHHHHHHHHCC---------CCCCCCCCCHHH Q ss_conf 899999999638---------844762798579 Q gi|254780241|r 340 PKEAADNLKKHG---------GFIPGIRPGDRT 363 (444) Q Consensus 340 P~~iAe~L~k~g---------~~IpGiRPG~~T 363 (444) =.|+||+|-+.. -.+-|+||||+- T Consensus 484 I~dLAk~mi~l~g~~~~~dI~I~~~GlRpGEKl 516 (588) T COG1086 484 IIDLAKAMIELAGQTPPGDIAIKIIGLRPGEKL 516 (588) T ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHH T ss_conf 999999999981779988877699855875314 No 47 >TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA; InterPro: IPR005081 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA . ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 sporulation (sensu Bacteria). Probab=20.67 E-value=53 Score=12.79 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=22.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH--HHHHHHHHH Q ss_conf 999999999999997235567622587504799999999999--999999999 Q gi|254780241|r 127 ATVLLGILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGG--TMFLVWLGE 177 (444) Q Consensus 127 ltl~~a~iQs~~~~~~l~~~~~~~~~~~~~~~~~~il~L~aG--s~il~wl~e 177 (444) ...+.=++-|..++...-..............+..+..+++| .++...+.| T Consensus 76 ~~~~~KLl~S~li~~~~f~~~~~~~~~k~~~~Fy~~~f~~gGgl~al~f~l~~ 128 (320) T TIGR02854 76 TSPIAKLLYSFLIIFIAFGKKSLRFFLKLLFLFYFVSFATGGGLFALHFFLAT 128 (320) T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 77899999999999997167667899999999999999987899999998826 Done!