HHsearch alignment of GI: 254780241 and MMDB domain: 2ww9_A_1-215
>2ww9_A (A:1-215) SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phosphoprotein, signal sequence, membrane, ribosome, cytoplasm; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Probab=100.00 E-value=0 Score=340.50 Aligned_cols=188 Identities=18% Similarity=0.194 Sum_probs=168.9
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf 98835878899999999999999850679898739889999873035537889986427702220468735478999999
Q gi|254780241|r 15 ASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYISASI 94 (444)
Q Consensus 15 ~~~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyItASI 94 (444)
++.||++|+|+|++||++++++||+| +||+||+|.++.+ +.+.++++.++|||++|+|+|+|||+|||||||
T Consensus 21 ~~~~~~~~l~~ki~~T~~il~iy~lg-~IplpGi~~~~~~-------~~~~~~~~~~~g~a~~~~slf~LGI~P~ItasI 92 (215)
T 2ww9_A 21 ELPFEKLPFDDKIVYTIFAGLIYLFA-QFPLVGLPKATTP-------NVNDPIYFLRGVFGCEPRTLLEFGLFPNISSGL 92 (215)
T ss_dssp CCCCCCCCSHHHHHHHHHHHHHTTCC-SSCCSCHHHHTTT-------CSSCCCTTTHHHHTCCSSSTTSSTTHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCCCCCHHHHH-------HHCCHHHHHHHHHCCCHHHHHHHCHHHHHHHHH
T ss_conf 48888998888999999999999851-4687997855643-------011569999997331110599977399999999
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999852154786411463689999988699999999999999997235567622587504799999999999999999
Q gi|254780241|r 95 IVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVW 174 (444)
Q Consensus 95 i~QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~~~~~~~~~~~~~~~il~L~aGs~il~w 174 (444)
+||||+. |+++++|||+|+||+|+|++||++|+++|++||++++.... ...+.+..+++.++++|++|+++++|
T Consensus 93 i~QlL~~--~~l~~~~~~~~~gr~k~~~~tr~lti~~a~iqs~~~~~~~~----~~~~~~~~~~~~~~l~L~~Gs~i~~w 166 (215)
T 2ww9_A 93 ILQLLAG--LKVIKVNFKIQSDRELFQSLTKVFAIVQYVILTNIFIFAGY----FGDDLSVVQIGLINFQLVGAGIFTTL 166 (215)
T ss_dssp HHHHHHH--HTSSCCCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----SSCCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--CHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999863--60766261367679999999999999999999999999975----16674315789999999757899999
Q ss_pred HHHHHHH-CCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9998740-88987520362101465767887433332001232
Q gi|254780241|r 175 LGEQITM-RGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGSI 216 (444)
Q Consensus 175 l~e~It~-~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~~~~ 216 (444)
+||+||| ||+|||+|++|++||++++|+++.+.+.....++.
T Consensus 167 l~e~It~~yGiGnGiSliI~~~I~~~i~~~~~~~~~~~~~~~~ 209 (215)
T 2ww9_A 167 LAEVIDKGFGFSSGAMIINTVVIATNLVADTFGVSQIKVGEDD 209 (215)
T ss_dssp HHHHHHTTSSSSCHHHHHHHHHHHHHHHHHHTCCCCCCCCSSC
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCC
T ss_conf 9988715545014689999999999999863042020246764