HHsearch alignment of GI: 254780241 and MMDB domain: 2wwb_A_252-476
>2wwb_A (A:252-476) Protein transport protein SEC61 subunit alpha isoform 1; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=100.00 E-value=0 Score=344.67 Aligned_cols=190 Identities=19% Similarity=0.278 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH-----
Q ss_conf 999998865332321011012116642356431144420000237999999999868888875077772479998-----
Q gi|254780241|r 232 IALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSSPTWIVG----- 306 (444)
Q Consensus 232 i~~iV~v~~~~rrIPi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~----- 306 (444)
++++||+|+++||||++|+| .+++++|+|+|+||+|+||+|||++++++|++++++++.....++...
T Consensus 1 f~~~v~~~~~~~~IPi~~~~-------~~~~~~~lPiKln~~GvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~l~~~ 73 (225)
T 2wwb_A 1 FAVVIYFQGFRVDLPIKSAR-------YRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTW 73 (225)
T ss_dssp HHHHHHHHHCCBCCCCCBCS-------SSSBCSCCCBCTTTSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHCSS
T ss_pred HHHHHHHHEEEEEECCCCCC-------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 97643321036774144333-------46876666743343232109999999987999999972137530577876655
Q ss_pred ----------------HHHHCCC------------CCCHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHCCCCCCCC
Q ss_conf ----------------8753066------------763169999999999999998623-79899999999638844762
Q gi|254780241|r 307 ----------------LVDSLGH------------GRSFYMVLYSVFIVFFAFFYTAIV-FNPKEAADNLKKHGGFIPGI 357 (444)
Q Consensus 307 ----------------~~~~~~~------------~~~~y~i~y~ilii~Fs~f~~~i~-~~P~~iAe~L~k~g~~IpGi 357 (444)
+..++.+ +.++|.++|++++++|++||+.+. +||||+||||+|+|++|||+
T Consensus 74 ~~~~~~~~~~~~~~~g~~yYl~~p~~~~~~~~~p~~~~iy~~~~~~l~i~Fs~~~~~i~~~~pk~iA~~lkk~g~~IpG~ 153 (225)
T 2wwb_A 74 SDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGH 153 (225)
T ss_dssp STTCSCTTSSSCCSSSHHHHTSCCSSSSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTTCCC
T ss_pred HHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC
T ss_conf 20023565556610045655168634888875430369999999999999999999960899999999999869927898
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 798579999999999999999999999999999999984884100257999999999999999999999985265643
Q gi|254780241|r 358 RPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQIQGYLIAQQYEGVFK 435 (444)
Q Consensus 358 RPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~~~~~gGTslLI~Vgv~l~~~~qi~a~~~~~~Y~~~~~ 435 (444)
|||+ |+|||+|+++|+|++||++++++|++|++++..+ +|||+||+|||++|++||+++++.+++|++++|
T Consensus 154 Rpg~-t~~~L~~~i~~~t~~G~~~l~~la~~p~~~~~~~------~gtsilI~V~v~~~~~~~i~~~~~~~~y~~~~~ 224 (225)
T 2wwb_A 154 RETS-MVHELNRYIPTAAAFGGLCIGALSVLADFLGAIG------SGTGILLAVTIIYQYFEIFVKEQSEVGSMGALL 224 (225)
T ss_dssp CTTT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSS------CHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCSC
T ss_pred CCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9972-4999999999999999999999999999998704------478799999999999999999986567555205