HHsearch alignment of GI: 254780241 and MMDB domain: 2wwb_A_252-476

>2wwb_A (A:252-476) Protein transport protein SEC61 subunit alpha isoform 1; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=100.00  E-value=0  Score=344.67  Aligned_cols=190  Identities=19%  Similarity=0.278  Sum_probs=166.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH-----
Q ss_conf             999998865332321011012116642356431144420000237999999999868888875077772479998-----
Q gi|254780241|r  232 IALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSSPTWIVG-----  306 (444)
Q Consensus       232 i~~iV~v~~~~rrIPi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~-----  306 (444)
                      ++++||+|+++||||++|+|       .+++++|+|+|+||+|+||+|||++++++|++++++++.....++...     
T Consensus         1 f~~~v~~~~~~~~IPi~~~~-------~~~~~~~lPiKln~~GvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~l~~~   73 (225)
T 2wwb_A            1 FAVVIYFQGFRVDLPIKSAR-------YRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTW   73 (225)
T ss_dssp             HHHHHHHHHCCBCCCCCBCS-------SSSBCSCCCBCTTTSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHCSS
T ss_pred             HHHHHHHHEEEEEECCCCCC-------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             97643321036774144333-------46876666743343232109999999987999999972137530577876655


Q ss_pred             ----------------HHHHCCC------------CCCHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHCCCCCCCC
Q ss_conf             ----------------8753066------------763169999999999999998623-79899999999638844762
Q gi|254780241|r  307 ----------------LVDSLGH------------GRSFYMVLYSVFIVFFAFFYTAIV-FNPKEAADNLKKHGGFIPGI  357 (444)
Q Consensus       307 ----------------~~~~~~~------------~~~~y~i~y~ilii~Fs~f~~~i~-~~P~~iAe~L~k~g~~IpGi  357 (444)
                                      +..++.+            +.++|.++|++++++|++||+.+. +||||+||||+|+|++|||+
T Consensus        74 ~~~~~~~~~~~~~~~g~~yYl~~p~~~~~~~~~p~~~~iy~~~~~~l~i~Fs~~~~~i~~~~pk~iA~~lkk~g~~IpG~  153 (225)
T 2wwb_A           74 SDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGH  153 (225)
T ss_dssp             STTCSCTTSSSCCSSSHHHHTSCCSSSSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTTCCC
T ss_pred             HHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC
T ss_conf             20023565556610045655168634888875430369999999999999999999960899999999999869927898


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             798579999999999999999999999999999999984884100257999999999999999999999985265643
Q gi|254780241|r  358 RPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQIQGYLIAQQYEGVFK  435 (444)
Q Consensus       358 RPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~~~~~gGTslLI~Vgv~l~~~~qi~a~~~~~~Y~~~~~  435 (444)
                      |||+ |+|||+|+++|+|++||++++++|++|++++..+      +|||+||+|||++|++||+++++.+++|++++|
T Consensus       154 Rpg~-t~~~L~~~i~~~t~~G~~~l~~la~~p~~~~~~~------~gtsilI~V~v~~~~~~~i~~~~~~~~y~~~~~  224 (225)
T 2wwb_A          154 RETS-MVHELNRYIPTAAAFGGLCIGALSVLADFLGAIG------SGTGILLAVTIIYQYFEIFVKEQSEVGSMGALL  224 (225)
T ss_dssp             CTTT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSS------CHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCSC
T ss_pred             CCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             9972-4999999999999999999999999999998704------478799999999999999999986567555205