Query         gi|254780241|ref|YP_003064654.1| preprotein translocase subunit SecY [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 444
No_of_seqs    128 out of 1544
Neff          6.2 
Searched_HMMs 33803
Date          Tue May 24 02:12:25 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780241.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1rh5_A Preprotein translocase 100.0       0       0  735.3  22.4  395   13-438    13-435 (436)
  2 >2akh_Y Preprotein translocase 100.0       0       0  686.0  37.2  357   81-437     1-360 (360)
  3 >2zjs_Y Preprotein translocase 100.0       0       0  428.5  22.6  222  216-440     2-224 (224)
  4 >2zjs_Y Preprotein translocase 100.0       0       0  377.1  19.9  179   21-199     1-184 (184)
  5 >2ww9_A SEC sixty-one protein  100.0       0       0  358.7   9.6  209  221-443     6-249 (250)
  6 >3din_C Preprotein translocase 100.0       0       0  348.7   8.9  172   13-184     4-183 (183)
  7 >2wwb_A Protein transport prot 100.0       0       0  344.7  11.0  190  232-435     1-224 (225)
  8 >3din_C Preprotein translocase 100.0       0       0  341.6   9.9  178  214-398     2-179 (180)
  9 >2ww9_A SEC sixty-one protein  100.0       0       0  340.5   8.4  188   15-216    21-209 (215)
 10 >3dl8_G Preprotein translocase 100.0       0       0  339.0   8.5  172   13-184     4-181 (181)
 11 >3dl8_G Preprotein translocase  99.6 1.7E-16   5E-21  124.0  -1.2   62  235-359     1-62  (62)
 12 >2wwb_A Protein transport prot  99.3 9.4E-13 2.8E-17  100.1   4.7   75   67-146     2-76  (92)
 13 >3dl8_G Preprotein translocase  99.2 5.7E-12 1.7E-16   95.1   3.2   59  275-337     1-59  (59)
 14 >1t11_A Trigger factor, TF; he  80.4     1.7 4.9E-05   22.0   3.2   36  336-371    20-61  (120)
 15 >2nsc_A Trigger factor, TF; ch  59.2     6.7  0.0002   18.1   2.4   23  348-370    15-37  (89)
 16 >2d3o_1 Trigger factor, TF; ri  59.2     3.2 9.5E-05   20.1   0.8   24  349-372    35-58  (112)
 17 >1w26_A Trigger factor, TF; ch  58.4     4.8 0.00014   19.0   1.6   33  338-370    19-57  (117)
 18 >1p9y_A Trigger factor, TF; al  58.2     5.7 0.00017   18.5   1.9   35  338-372    22-62  (121)
 19 >3gty_X Trigger factor, TF; ch  52.5     8.9 0.00026   17.3   2.1   32  338-369    19-56  (108)
 20 >3ixz_B Potassium-transporting  40.6     7.2 0.00021   17.9   0.2   16    1-16      1-16  (290)
 21 >1zl8_A LIN-7; heterodimer, al  34.5      26 0.00076   14.4   2.3   23  105-127    15-37  (53)
 22 >1y74_A LIN 7 homolog B; L27 d  30.6      24  0.0007   14.6   1.5   24  105-128    13-36  (57)
 23 >1tvs_A Transactivator protein  21.6      20 0.00058   15.1  -0.3   23  340-362     7-29  (75)

No 1  
>>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} (A:)
Probab=100.00  E-value=0  Score=735.34  Aligned_cols=395  Identities=17%  Similarity=0.224  Sum_probs=354.8

Q ss_pred             CHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHH
Q ss_conf             88988358788999999999999998506798987398899998730355378899864277022204687354789999
Q gi|254780241|r   13 NFASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYISA   92 (444)
Q Consensus        13 ~~~~~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyItA   92 (444)
                      .+++.||++|+|+|++||++++++||+|++||+||+|++           .+.+++++++|||++++|+|+|||+|||||
T Consensus        13 ~~~~~~~~~~l~~ki~~Tl~il~iy~ig~~IplpGi~~~-----------~~~~~~~~~~g~a~~~~slf~LGI~P~ItA   81 (436)
T 1rh5_A           13 EVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQ-----------IPAIFEFWQTITASRIGTLITLGIGPIVTA   81 (436)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCC-----------CCSCCTTHHHHHTCCTTBTTTTTTHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-----------CCCHHHHHHHHHCCCCCHHHHHCHHHHHHH
T ss_conf             877988889788799999999999998336875888988-----------653789999872431042999772999999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999998521547864114636899999886999999999999999972355676225875047999999999999999
Q gi|254780241|r   93 SIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFL  172 (444)
Q Consensus        93 SIi~QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~~~~~~~~~~~~~~~il~L~aGs~il  172 (444)
                      ||+||||+..  +++++||+||+||+|+|++||++|+++|++||++++.++.     ..+.+..+++.++++|++|++++
T Consensus        82 sIi~QLl~~~--~l~~~~~~~~~gr~k~~~~tr~ltl~~a~iqa~~~~~~~~-----~~~~~~~~~~~~~~~L~~Gs~i~  154 (436)
T 1rh5_A           82 GIIMQLLVGS--GIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGA-----FGILTPLLAFLVIIQIAFGSIIL  154 (436)
T ss_dssp             HHHHHHHHHH--TTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-----SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHC--HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             9999999735--2767630267589999999999999999999999996221-----57886189999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999874088987520362101465767887433332001------232158999999999999999998865332321
Q gi|254780241|r  173 VWLGEQITMRGIGNGVSLIIFSGIVAGLPSSLVSVLELGRV------GSISTPLMLLIFSSTVAVIALVIFFERAQRRLL  246 (444)
Q Consensus       173 ~wl~e~It~~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~------~~~~~~~~l~~~~~~l~vi~~iV~v~~~~rrIP  246 (444)
                      +|+||+|||||+|||+|++|++||++++|+++.+.++....      +.......+..+..++++++++||+|+++||||
T Consensus       155 iwL~e~it~~GiGnG~SliI~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~Ip  234 (436)
T 1rh5_A          155 IYLDEIVSKYGIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIP  234 (436)
T ss_dssp             HHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHTTTTCCCGGGTHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             99999985028564528999999999988750150469999998874033218899999999999999999878742223


Q ss_pred             HCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCC--------HHHHHHHHHHCCC-----
Q ss_conf             011012116642356431144420000237999999999868888875077772--------4799988753066-----
Q gi|254780241|r  247 IQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSS--------PTWIVGLVDSLGH-----  313 (444)
Q Consensus       247 i~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~--------~~~~~~~~~~~~~-----  313 (444)
                      +||+|       .+++++|+|+|+||+|+||+||||+++++|++++++++....        .+|..++.+++++     
T Consensus       235 i~~~~-------~~~~~~~~PiKln~~GvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~~~~~~~~i~~yls~p~~~~  307 (436)
T 1rh5_A          235 LAHGR-------IKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAYYLSTPYGLS  307 (436)
T ss_dssp             CCCSS-------STTCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCBCSSSBSSSTTGGGCCCCSSS
T ss_pred             CCCCC-------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCHHH
T ss_conf             33432-------23444467755440124689999999985899988632036653345677745788999958841121


Q ss_pred             -------CCCHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHCCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf             -------763169999999999999998623-798999999996388447627985799-99999999999999999999
Q gi|254780241|r  314 -------GRSFYMVLYSVFIVFFAFFYTAIV-FNPKEAADNLKKHGGFIPGIRPGDRTA-LHIDYVLTRVTVVGAGYLVC  384 (444)
Q Consensus       314 -------~~~~y~i~y~ilii~Fs~f~~~i~-~~P~~iAe~L~k~g~~IpGiRPG~~T~-~yL~~v~~rit~~Ga~~l~~  384 (444)
                             +.++|.++|.+++++|++||+.++ +||||+||||+|+|++|||+||||+|. +||+|+++|+|++||+++++
T Consensus       308 ~~~~~~~~~~~y~~~~~~l~i~Fs~f~~~~~~~~p~~ia~~l~k~g~~IpGvrpg~~T~~~~L~~~i~~~t~~G~~~l~~  387 (436)
T 1rh5_A          308 SVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGF  387 (436)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             02357641278999999999999999999867887999999998598077879994149999998999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999999984884100257999999999999999999999985265643110
Q gi|254780241|r  385 VCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQIQGYLIAQQYEGVFKKSR  438 (444)
Q Consensus       385 la~~p~~~~~~~~~~~~~gGTslLI~Vgv~l~~~~qi~a~~~~~~Y~~~~~~~~  438 (444)
                      +|++|++++..+      ||||+||+|||++|++||+++++.+++|++++||.+
T Consensus       388 la~~p~~~~~~~------~gtsilI~V~v~~~~~~qi~~~~~~~~y~~~~~~~~  435 (436)
T 1rh5_A          388 LATIANFIGALG------GGTGVLLTVSIVYRMYEQLLRERTSELHPAIAKLLN  435 (436)
T ss_dssp             HHHHHHHHCCTT------CSHHHHHHHHHHHHHHHHHHTTCC------------
T ss_pred             HHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999998713------378799999999999999999999987289998717


No 2  
>>2akh_Y Preprotein translocase SECY subunit; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_Y (Y:41-400)
Probab=100.00  E-value=0  Score=685.95  Aligned_cols=357  Identities=50%  Similarity=0.901  Sum_probs=345.9

Q ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCCCHH
Q ss_conf             6873547899999999999852154786411463689999988699999999999999997235567---6225875047
Q gi|254780241|r   81 VFSLGIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQ---GIVSDSDYFF  157 (444)
Q Consensus        81 if~LGI~PyItASIi~QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~---~~~~~~~~~~  157 (444)
                      +|+|||+|||||||+||||+..+|+++|+|||||+||||+|++|||+|+++|++||++++.++++..   +...+++..+
T Consensus         1 lf~LGI~P~ItasIi~QlL~~~~p~l~~l~~~~~~gr~k~~~~tr~ltl~~a~iqa~~~~~~~~~~~~~~~~~~~~~~~~   80 (360)
T 2akh_Y            1 IFALGIMPYISASIIIQLLTVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAF   80 (360)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHH
T ss_conf             99974389999999999999876769998651754389999999999999999999999987623677554233783699


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999874088987520362101465767887433332001232158999999999999999998
Q gi|254780241|r  158 VFSTIITLLGGTMFLVWLGEQITMRGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGSISTPLMLLIFSSTVAVIALVIF  237 (444)
Q Consensus       158 ~~~~il~L~aGs~il~wl~e~It~~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~~~~~~~~~l~~~~~~l~vi~~iV~  237 (444)
                      .+.++++|++|+++++|+||+|||||+|||+|++|++||++++|+.+.+.++.....+.+....++.+..+++++++++|
T Consensus        81 ~~~~i~~L~~G~~i~~wL~e~i~~~GiGnG~SllI~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  160 (360)
T 2akh_Y           81 YFTAVVSLVTGTMFLMWLGEQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFLVLLLVAVLVFAVTFFVVF  160 (360)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEE
T ss_conf             99999999999999999888987537477815687899987889999998876126852499999999999999886046


Q ss_pred             HHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCH
Q ss_conf             86533232101101211664235643114442000023799999999986888887507777247999887530667631
Q gi|254780241|r  238 FERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSSPTWIVGLVDSLGHGRSF  317 (444)
Q Consensus       238 v~~~~rrIPi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (444)
                      +|+++||||+||+|++.+++.++++++|+|+|+||+||||+|||++++++|++++++++....++|..++.+++++++|+
T Consensus       161 ~~~~~~~Ipi~~~~~~~~~~~~~~~~~~iPiKln~agvmPiIfassll~~p~~i~~~l~~~~~~~~~~~i~~~~s~~~~~  240 (360)
T 2akh_Y          161 VERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGGTGWNWLTTISLYLQPGQPL  240 (360)
T ss_pred             EEECCCCCEEEEHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHH
T ss_conf             76411001122110015655456654534001278888899999999999999998732243178999999870899829


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             69999999999999998623798999999996388447627985799999999999999999999999999999999848
Q gi|254780241|r  318 YMVLYSVFIVFFAFFYTAIVFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTG  397 (444)
Q Consensus       318 y~i~y~ilii~Fs~f~~~i~~~P~~iAe~L~k~g~~IpGiRPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~  397 (444)
                      |.++|++++++|+|||+..++||||+||||+|+|++|||+||||+|+|||+|+++|++++||++++++|++|++++..++
T Consensus       241 ~~~~y~vlii~f~~~~~~~~~~p~~ia~~l~k~g~~IpGvrpg~~T~~~L~~~i~~~~~~G~i~l~~la~~p~~~~~~~~  320 (360)
T 2akh_Y          241 YVLLYASAIIFFCFFYTALVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLVGALYITFICLIPEFMRDAMK  320 (360)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999999999999999993789999999998589688989981359999999999999999999999999999999609


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             8410025799999999999999999999998526564311
Q gi|254780241|r  398 VPVSLSGTSLLIIVSVVLDTIVQIQGYLIAQQYEGVFKKS  437 (444)
Q Consensus       398 ~~~~~gGTslLI~Vgv~l~~~~qi~a~~~~~~Y~~~~~~~  437 (444)
                      .+..+||||++|+|+|++|++||+++++.+++|++++||+
T Consensus       321 ~~~~~~gt~ili~V~vi~~~~~qi~~~~~~~~y~~~~~~~  360 (360)
T 2akh_Y          321 VPFYFGGTSLLIVVVVIMDFMAQVQTLMMSSQYESALKKA  360 (360)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             8802637889999999999999999999899877873479


No 3  
>>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, protein transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y (Y:211-434)
Probab=100.00  E-value=0  Score=428.49  Aligned_cols=222  Identities=32%  Similarity=0.656  Sum_probs=211.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             21589999999999999999988653323210110121166423564311444200002379999999998688888750
Q gi|254780241|r  216 ISTPLMLLIFSSTVAVIALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFI  295 (444)
Q Consensus       216 ~~~~~~l~~~~~~l~vi~~iV~v~~~~rrIPi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~  295 (444)
                      .+....++.++.++++++++||+|+++||||+||+|+..+++.++++++|+|+|+||+||||+||||+++++|+++++++
T Consensus         2 ~~~~~~l~~~~~~l~~~~~~v~~~~~~~kIPi~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~   81 (224)
T 2zjs_Y            2 VNLVAFLFFLAFIVLAFAGMAAVQQAERRIPVQYARKVVGGRVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPF   81 (224)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECC-------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHCCCCCCCCCCEEEEEECCCCEEECHHHHHHHHHHHHHHHHCC
T ss_conf             31479999999999999999999974541201211331354345787403432022001423799999886478876304


Q ss_pred             CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             77772479998875306676316999999999999999862379899999999638844762798579999999999999
Q gi|254780241|r  296 DVSSSPTWIVGLVDSLGHGRSFYMVLYSVFIVFFAFFYTAIVFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTRVT  375 (444)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~y~i~y~ilii~Fs~f~~~i~~~P~~iAe~L~k~g~~IpGiRPG~~T~~yL~~v~~rit  375 (444)
                      ++.   .+..++.+++++++++|.++|++++++|+|||+.+++||||+||||+|||++|||+||||+|++||+|+++|+|
T Consensus        82 ~~~---~~~~~~~~~l~~~~~~~~i~y~~lii~f~~f~s~~~~~p~diAe~Lkk~g~~IpGirpG~~T~~yL~k~i~~~t  158 (224)
T 2zjs_Y           82 QDN---PVLQGIANFFNPTRPSGLFIEVLLVILFTYVYTAVQFDPKRIAESLREYGGFIPGIRPGEPTVKFLEHIVSRLT  158 (224)
T ss_dssp             TTC---HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHTTTTTEECTTBCSSHHHHHHHHHHHHHHH
T ss_pred             CCH---HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHH
T ss_conf             413---67888888617887469999999999999999997088899999999779884375898668999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999999999984884-10025799999999999999999999998526564311016
Q gi|254780241|r  376 VVGAGYLVCVCIFPEALIAVTGVP-VSLSGTSLLIIVSVVLDTIVQIQGYLIAQQYEGVFKKSRSK  440 (444)
Q Consensus       376 ~~Ga~~l~~la~~p~~~~~~~~~~-~~~gGTslLI~Vgv~l~~~~qi~a~~~~~~Y~~~~~~~~~~  440 (444)
                      ++||++++++|++|++++..++.+ ..+||||+||+||+++|++||+++++.+++|++++||+|.|
T Consensus       159 ~~Ga~~l~~ia~~p~l~~~~~~~~~~~~ggTslLI~Vgv~~~~~~qi~~~~~~~~Y~~~~k~~~~~  224 (224)
T 2zjs_Y          159 LWGALFLGLVTLLPQIIQNLTGIHSIAFSGIGLLIVVGVALDTLRQVESQLMLRSYEGFLSRGRLR  224 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCCGGGSSHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             999999999999999999983767636633878858999999999999999998707886324689


No 4  
>>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, protein transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y (Y:12-195)
Probab=100.00  E-value=0  Score=377.12  Aligned_cols=179  Identities=44%  Similarity=0.846  Sum_probs=171.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf             78899999999999999850679898739889999873035537889986427702220468735478999999999998
Q gi|254780241|r   21 KDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYISASIIVQLIA  100 (444)
Q Consensus        21 ~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyItASIi~QLL~  100 (444)
                      ||+|+|++||++++++||+|++||+||+|.+++++..+.++++++++++.++|||++|+|+|+|||+|||||||+||||+
T Consensus         1 ~el~~Ki~~Tl~~l~i~rlg~~IplpGi~~~~~~~~~~~~~~~~~~~~~~~sgga~~~~SifsLGI~P~ItasIi~QlL~   80 (184)
T 2zjs_Y            1 PELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEFLRTAQGGVFGIINLFSGGNFERFSIFALGIMPYITAAIIMQILV   80 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCBCTTBCHHHHHHHHHSSGGGTTHHHHHHTTSCGGGTBTTSSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88999999999999999996238899869999999987345307889998616653105299862489999999999998


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             52154786411463689999988699999999999999997235567-----6225875047999999999999999999
Q gi|254780241|r  101 ATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQ-----GIVSDSDYFFVFSTIITLLGGTMFLVWL  175 (444)
Q Consensus       101 ~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~-----~~~~~~~~~~~~~~il~L~aGs~il~wl  175 (444)
                      ..+|+++|+|||||+||||+|++|||+|+++|++||++++.++++.+     ....+++..+.+.++++|++|+++++|+
T Consensus        81 ~~~p~l~~~~~~~~~gr~k~~~~tr~ltl~~a~iqa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~i~~wl  160 (184)
T 2zjs_Y           81 TVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVAGIALLLWM  160 (184)
T ss_dssp             HHSHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             57310765321324469999999999999999999999999985057764014656804789999999999999999999


Q ss_pred             HHHHHHCCCCCCCHHHHCCCHHHH
Q ss_conf             998740889875203621014657
Q gi|254780241|r  176 GEQITMRGIGNGVSLIIFSGIVAG  199 (444)
Q Consensus       176 ~e~It~~GIGnG~SLiI~~gIi~~  199 (444)
                      ||+|||||+|||+|++|++||+++
T Consensus       161 ~e~it~~GiGnG~SliI~~~I~~~  184 (184)
T 2zjs_Y          161 AERITEYGIGNGTSLIIFAGIVVE  184 (184)
T ss_dssp             HHHHHHTSSSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             888765512667123443647874


No 5  
>>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phosphoprotein, signal sequence, membrane, ribosome, cytoplasm; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A (A:241-490)
Probab=100.00  E-value=0  Score=358.74  Aligned_cols=209  Identities=15%  Similarity=0.144  Sum_probs=180.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             99999999999999998865332321011012116642356431144420000237999999999868888875077772
Q gi|254780241|r  221 MLLIFSSTVAVIALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSS  300 (444)
Q Consensus       221 ~l~~~~~~l~vi~~iV~v~~~~rrIPi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~  300 (444)
                      .++.++.++++++++||+|+++||||+||+|       .+++++|+|+|+||+|+||+|||++++++|++++++++....
T Consensus         6 ~l~~~~~~i~~~~~~v~~q~~~~~IPi~~~~-------~~~~~~~~PiKln~agvmPiIfa~sll~~~~~i~~~l~~~~~   78 (250)
T 2ww9_A            6 NLTTTIIVLAIAIIVCYLQSVRVELPIRSTR-------ARGTNNVYPIKLLYTGCLSVLFSYTILFYIHIFAFVLIQLVA   78 (250)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCCEECCCBCSS-------SSSBCCCCEECHHHHTHHHHHHHHHHHHHCSSSCSTTTHHHH
T ss_pred             HHHHHHHHHHHHEEEEEEEEEEEEECCCCCC-------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999998872799964337984032143-------357774021014533430799999999879999999987621


Q ss_pred             H----HHHHHHH------------------HHC------------CCCCCHHHHHHHHHHHHHHHHHHHHC-CCHHHHHH
Q ss_conf             4----7999887------------------530------------66763169999999999999998623-79899999
Q gi|254780241|r  301 P----TWIVGLV------------------DSL------------GHGRSFYMVLYSVFIVFFAFFYTAIV-FNPKEAAD  345 (444)
Q Consensus       301 ~----~~~~~~~------------------~~~------------~~~~~~y~i~y~ilii~Fs~f~~~i~-~~P~~iAe  345 (444)
                      +    ++..+..                  .++            .++.++|.++|++++++|++||+.+. .||||+||
T Consensus        79 ~~~~~~~l~~~~~~~~~~~~~~~~~~~gl~~yl~~p~~~~~~~~~~~~~~~y~~~~~~l~i~Fs~f~~~i~~~~pkdia~  158 (250)
T 2ww9_A           79 KNEPTHIICKIMGHYENANNLLAVPTFPLSLLAPPTSFFKGVTQQPLTFITYSAFILVTGIWFADKWQAISGSSARDVAL  158 (250)
T ss_dssp             HCCCCSSSCTTSBCCSCCSSSSCSCSSBSCCSSCCCCSSCCCCSCSHHHHHHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             22406899999875156677655664331122687313334330415899999999999999999999970899999999


Q ss_pred             HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99963884476279857999999999999999999999999999999998488410025799999999999999999999
Q gi|254780241|r  346 NLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQIQGYL  425 (444)
Q Consensus       346 ~L~k~g~~IpGiRPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~~~~~gGTslLI~Vgv~l~~~~qi~a~~  425 (444)
                      ||+|+|++|||+||| +|++||+|+++|+|++||++++++|++|++++..+      +|||+||+||+++|++||++++.
T Consensus       159 ~L~k~g~~IpG~Rp~-~t~~yL~k~i~~~t~~G~~~l~~la~~p~ll~~~~------~gtsiLI~V~v~~~~~~qi~~~~  231 (250)
T 2ww9_A          159 EFKDQGITLMGRREQ-NVAKELNKVIPIAAVTGASVLSLITVIGESLGLKG------KAAGIVVGIAGGFSLLEVITIEY  231 (250)
T ss_dssp             HHHHHHHTSSSCCCC-CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS------SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999869957798983-37999998899999999999999999999997502------55558999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCC
Q ss_conf             998526564311016777
Q gi|254780241|r  426 IAQQYEGVFKKSRSKKKN  443 (444)
Q Consensus       426 ~~~~Y~~~~~~~~~~~~~  443 (444)
                      .+++|++++||...|++.
T Consensus       232 ~~~~y~~~l~~~~~~~~~  249 (250)
T 2ww9_A          232 QQSGGQSALNQVLGVPGA  249 (250)
T ss_dssp             HTTCSSCSTTSSCCCCCC
T ss_pred             HHHHHHHHHHHHCCCCCC
T ss_conf             998648999986388689


No 6  
>>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP- binding, cytoplasm, inner membrane, nucleotide-binding; HET: ADP; 4.50A {Thermotoga maritima MSB8} (C:1-183)
Probab=100.00  E-value=0  Score=348.75  Aligned_cols=172  Identities=41%  Similarity=0.794  Sum_probs=161.0

Q ss_pred             CHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC-----CCCHHHHHHHHCCCCHHHHHHHHHCCH
Q ss_conf             889883587889999999999999985067989873988999987303-----553788998642770222046873547
Q gi|254780241|r   13 NFASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSK-----SAGIFGLFNMFSGGAVERMAVFSLGIM   87 (444)
Q Consensus        13 ~~~~~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~-----~~~~~~~l~~~sGga~~~~sif~LGI~   87 (444)
                      .+++.||++|+|+|++||++++++||+|++||+||+|.+++.+.++++     +++++++++.++|||++|+|+|+|||+
T Consensus         4 ~~~~~~~~~~l~~Kil~Tl~il~iyr~g~~IplpGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGga~~~~sif~LGI~   83 (183)
T 3din_C            4 AFKNAFKIPELRDRIIFTFLALIVFRMGIYIPVPGLNLEAWGEIFRRIAETAGVAGILSFYDVFTGGALSRFSVFTMSVT   83 (183)
T ss_dssp             ----CCSCSCCSSHHHHHHHHHHHHHHHHSCSSCCCCC--------------------CTTHHHHCSSSSCCCSSSSSHH
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHCCHHHHHHH
T ss_conf             89999757899999999999999999725288998598999999997540244201888998751422420509986348


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCCCHHHHHHHHH
Q ss_conf             89999999999985215478641146368999998869999999999999999723556---762258750479999999
Q gi|254780241|r   88 PYISASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNG---QGIVSDSDYFFVFSTIIT  164 (444)
Q Consensus        88 PyItASIi~QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~---~~~~~~~~~~~~~~~il~  164 (444)
                      |||||||+||+|+..+|+++|+|||||+||+|+|++|||+|+++|++||++++.++++.   .+...+++..+++.++++
T Consensus        84 P~ItAsIi~QlL~~~~p~l~~l~~~~~~gr~k~~~~tr~ltl~~a~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (183)
T 3din_C           84 PYITASIILQLLASVMPSLKEMLREGEEGRKKFAKYTRRLTLLIGGFQAFFVSFSLARSNPDMVAPGVNVLQFTVLSTMS  163 (183)
T ss_dssp             HHHHHHHHHHHHHHHSCSSSSCSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             99999999999985214343113446466899999999999999999999999998606987446657416899999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999999999998740889
Q gi|254780241|r  165 LLGGTMFLVWLGEQITMRGI  184 (444)
Q Consensus       165 L~aGs~il~wl~e~It~~GI  184 (444)
                      |++||++++|+||+||||||
T Consensus       164 lv~Gs~il~wL~e~It~~GI  183 (183)
T 3din_C          164 MLAGTMFLLWLGERITEKGI  183 (183)
T ss_dssp             HHHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999888742


No 7  
>>2wwb_A Protein transport protein SEC61 subunit alpha isoform 1; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} (A:252-476)
Probab=100.00  E-value=0  Score=344.67  Aligned_cols=190  Identities=19%  Similarity=0.278  Sum_probs=166.6

Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH-----
Q ss_conf             999998865332321011012116642356431144420000237999999999868888875077772479998-----
Q gi|254780241|r  232 IALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSSPTWIVG-----  306 (444)
Q Consensus       232 i~~iV~v~~~~rrIPi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~-----  306 (444)
                      ++++||+|+++||||++|+|       .+++++|+|+|+||+|+||+|||++++++|++++++++.....++...     
T Consensus         1 f~~~v~~~~~~~~IPi~~~~-------~~~~~~~lPiKln~~GvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~l~~~   73 (225)
T 2wwb_A            1 FAVVIYFQGFRVDLPIKSAR-------YRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTW   73 (225)
T ss_dssp             HHHHHHHHHCCBCCCCCBCS-------SSSBCSCCCBCTTTSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHCSS
T ss_pred             HHHHHHHHEEEEEECCCCCC-------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             97643321036774144333-------46876666743343232109999999987999999972137530577876655


Q ss_pred             ----------------HHHHCCC------------CCCHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHCCCCCCCC
Q ss_conf             ----------------8753066------------763169999999999999998623-79899999999638844762
Q gi|254780241|r  307 ----------------LVDSLGH------------GRSFYMVLYSVFIVFFAFFYTAIV-FNPKEAADNLKKHGGFIPGI  357 (444)
Q Consensus       307 ----------------~~~~~~~------------~~~~y~i~y~ilii~Fs~f~~~i~-~~P~~iAe~L~k~g~~IpGi  357 (444)
                                      +..++.+            +.++|.++|++++++|++||+.+. +||||+||||+|+|++|||+
T Consensus        74 ~~~~~~~~~~~~~~~g~~yYl~~p~~~~~~~~~p~~~~iy~~~~~~l~i~Fs~~~~~i~~~~pk~iA~~lkk~g~~IpG~  153 (225)
T 2wwb_A           74 SDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGH  153 (225)
T ss_dssp             STTCSCTTSSSCCSSSHHHHTSCCSSSSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTTCCC
T ss_pred             HHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC
T ss_conf             20023565556610045655168634888875430369999999999999999999960899999999999869927898


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             798579999999999999999999999999999999984884100257999999999999999999999985265643
Q gi|254780241|r  358 RPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQIQGYLIAQQYEGVFK  435 (444)
Q Consensus       358 RPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~~~~~gGTslLI~Vgv~l~~~~qi~a~~~~~~Y~~~~~  435 (444)
                      |||+ |+|||+|+++|+|++||++++++|++|++++..+      +|||+||+|||++|++||+++++.+++|++++|
T Consensus       154 Rpg~-t~~~L~~~i~~~t~~G~~~l~~la~~p~~~~~~~------~gtsilI~V~v~~~~~~~i~~~~~~~~y~~~~~  224 (225)
T 2wwb_A          154 RETS-MVHELNRYIPTAAAFGGLCIGALSVLADFLGAIG------SGTGILLAVTIIYQYFEIFVKEQSEVGSMGALL  224 (225)
T ss_dssp             CTTT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSS------CHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCSC
T ss_pred             CCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             9972-4999999999999999999999999999998704------478799999999999999999986567555205


No 8  
>>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP- binding, cytoplasm, inner membrane, nucleotide-binding; HET: ADP; 4.50A {Thermotoga maritima MSB8} (C:208-387)
Probab=100.00  E-value=0  Score=341.58  Aligned_cols=178  Identities=33%  Similarity=0.735  Sum_probs=166.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             23215899999999999999999886533232101101211664235643114442000023799999999986888887
Q gi|254780241|r  214 GSISTPLMLLIFSSTVAVIALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMG  293 (444)
Q Consensus       214 ~~~~~~~~l~~~~~~l~vi~~iV~v~~~~rrIPi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~  293 (444)
                      ++.+....++.++.++++++++||+|+++||||+||+|+..++++++++++|+|+|+||+||||+||||+++++|+++++
T Consensus         2 g~~~~~~~l~~~~~~~~i~~~~v~~~~~~~kIPi~~~~~~~~~~~~~~~~~yiPiKln~agvmPiIfassll~~p~~i~~   81 (180)
T 3din_C            2 GGLNLLEWIFLIAVALITIFGIILVQQAERRITIQYARRVTGRRVYGGASTYLPIKVNQGGVIPIIFASAIVSIPSAIAS   81 (180)
T ss_dssp             CCSCTHHHHHHHHHHHHHHHHHTTTCCBCCCCCCCBTTTBCCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             00017999999999999999999999999876422001002533357866512211568875699999999855899998


Q ss_pred             HHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             50777724799988753066763169999999999999998623798999999996388447627985799999999999
Q gi|254780241|r  294 FIDVSSSPTWIVGLVDSLGHGRSFYMVLYSVFIVFFAFFYTAIVFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTR  373 (444)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~y~i~y~ilii~Fs~f~~~i~~~P~~iAe~L~k~g~~IpGiRPG~~T~~yL~~v~~r  373 (444)
                      +++...       +.+.+++++|+|.++|++++++|+|||+..++||||+||||+|+|++|||+||||+|+|||+|+++|
T Consensus        82 ~l~~~~-------~~~~~~~~~~~~~~~y~~liiff~~~~~~~~~~pkdiAe~L~k~g~~IpGvRpG~~T~~yL~~~i~~  154 (180)
T 3din_C           82 ITNNET-------LKNLFRAGGFLYLLIYGLLVFFFTYFYSVVIFDPREISENIRKYGGYIPGLRPGRSTEQYLHRVLNR  154 (180)
T ss_dssp             SSTTCC-------CCCCSSTTHHHHHHHHHHHHHHHHHHHHTCTTHHHHHTTSCCCCBCSSCCCCCTTHHHHHHHHHHHH
T ss_pred             HCCCCC-------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             717730-------1231378871689999999999999999980677999999998697716989975689999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9999999999999999999998488
Q gi|254780241|r  374 VTVVGAGYLVCVCIFPEALIAVTGV  398 (444)
Q Consensus       374 it~~Ga~~l~~la~~p~~~~~~~~~  398 (444)
                      +|++||++++++|++|++++.++++
T Consensus       155 ~t~~G~i~l~~ia~~p~l~~~~~~~  179 (180)
T 3din_C          155 VTFIGAVFLVVIALLPYLVQGAIKV  179 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999999999999999999986388


No 9  
>>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phosphoprotein, signal sequence, membrane, ribosome, cytoplasm; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A (A:1-215)
Probab=100.00  E-value=0  Score=340.50  Aligned_cols=188  Identities=18%  Similarity=0.194  Sum_probs=168.9

Q ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHH
Q ss_conf             98835878899999999999999850679898739889999873035537889986427702220468735478999999
Q gi|254780241|r   15 ASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYISASI   94 (444)
Q Consensus        15 ~~~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyItASI   94 (444)
                      ++.||++|+|+|++||++++++||+| +||+||+|.++.+       +.+.++++.++|||++|+|+|+|||+|||||||
T Consensus        21 ~~~~~~~~l~~ki~~T~~il~iy~lg-~IplpGi~~~~~~-------~~~~~~~~~~~g~a~~~~slf~LGI~P~ItasI   92 (215)
T 2ww9_A           21 ELPFEKLPFDDKIVYTIFAGLIYLFA-QFPLVGLPKATTP-------NVNDPIYFLRGVFGCEPRTLLEFGLFPNISSGL   92 (215)
T ss_dssp             CCCCCCCCSHHHHHHHHHHHHHTTCC-SSCCSCHHHHTTT-------CSSCCCTTTHHHHTCCSSSTTSSTTHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCCCCCHHHHH-------HHCCHHHHHHHHHCCCHHHHHHHCHHHHHHHHH
T ss_conf             48888998888999999999999851-4687997855643-------011569999997331110599977399999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999852154786411463689999988699999999999999997235567622587504799999999999999999
Q gi|254780241|r   95 IVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVW  174 (444)
Q Consensus        95 i~QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~~~~~~~~~~~~~~~il~L~aGs~il~w  174 (444)
                      +||||+.  |+++++|||+|+||+|+|++||++|+++|++||++++....    ...+.+..+++.++++|++|+++++|
T Consensus        93 i~QlL~~--~~l~~~~~~~~~gr~k~~~~tr~lti~~a~iqs~~~~~~~~----~~~~~~~~~~~~~~l~L~~Gs~i~~w  166 (215)
T 2ww9_A           93 ILQLLAG--LKVIKVNFKIQSDRELFQSLTKVFAIVQYVILTNIFIFAGY----FGDDLSVVQIGLINFQLVGAGIFTTL  166 (215)
T ss_dssp             HHHHHHH--HTSSCCCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----SSCCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH--CHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999863--60766261367679999999999999999999999999975----16674315789999999757899999


Q ss_pred             HHHHHHH-CCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             9998740-88987520362101465767887433332001232
Q gi|254780241|r  175 LGEQITM-RGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGSI  216 (444)
Q Consensus       175 l~e~It~-~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~~~~  216 (444)
                      +||+||| ||+|||+|++|++||++++|+++.+.+.....++.
T Consensus       167 l~e~It~~yGiGnGiSliI~~~I~~~i~~~~~~~~~~~~~~~~  209 (215)
T 2ww9_A          167 LAEVIDKGFGFSSGAMIINTVVIATNLVADTFGVSQIKVGEDD  209 (215)
T ss_dssp             HHHHHHTTSSSSCHHHHHHHHHHHHHHHHHHTCCCCCCCCSSC
T ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCC
T ss_conf             9988715545014689999999999999863042020246764


No 10 
>>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} (G:1-181)
Probab=100.00  E-value=0  Score=338.96  Aligned_cols=172  Identities=38%  Similarity=0.800  Sum_probs=161.8

Q ss_pred             CHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHH
Q ss_conf             88988358788999999999999998506798987398899998730355378899864277022204687354789999
Q gi|254780241|r   13 NFASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYISA   92 (444)
Q Consensus        13 ~~~~~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyItA   92 (444)
                      .+++.||+||+|+|++||++++++||+|++||+||+|.+++++..+.++++..+++++++|||++|+|+|+|||+|||||
T Consensus         4 ~~~~~~~~~~l~~Kil~Tl~il~iyrlg~~Iplpgvd~~~~~~~~~~~~~~~~~~~~~~sgga~~~~SifsLGI~P~ItA   83 (181)
T 3dl8_G            4 YLKALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEALRDFLKAFEGSVFALYDIFSGGNLGRLTVFALGVMPYISA   83 (181)
T ss_dssp             ----CCSCCCCHHHHHHHHHHHHHHHHHHHCSSCCCC---------------CCSSSSSSCCSSSCCCSSSSSHHHHHHH
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCHHCCCHHHHCCHHHHHH
T ss_conf             89988576999999999999999999852288998699999999874355389999997042153041887165889999


Q ss_pred             HHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCCCHHHHHHHHHHH
Q ss_conf             999999985215478641-1463689999988699999999999999997235567-----6225875047999999999
Q gi|254780241|r   93 SIIVQLIAATVPSLENLK-KEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQ-----GIVSDSDYFFVFSTIITLL  166 (444)
Q Consensus        93 SIi~QLL~~~~P~l~~l~-kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~-----~~~~~~~~~~~~~~il~L~  166 (444)
                      ||+||||+...|.++|++ ||||+||||+|++|||+|+++|++||++++.++.+..     ....+++..+++.++++|+
T Consensus        84 sIi~Qll~~~~~~~~~~~~~eg~~gr~k~~~~tr~ltl~ia~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  163 (181)
T 3dl8_G           84 SIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLV  163 (181)
T ss_dssp             HHHHHHHHHHSSCSSSCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCCSSSTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHH
T ss_conf             99999998514317763124446789999999999999999999999999962035766540231750999999999999


Q ss_pred             HHHHHHHHHHHHHHHCCC
Q ss_conf             999999999998740889
Q gi|254780241|r  167 GGTMFLVWLGEQITMRGI  184 (444)
Q Consensus       167 aGs~il~wl~e~It~~GI  184 (444)
                      +|+++++|+||+||||||
T Consensus       164 aGs~~~iwL~e~it~~GI  181 (181)
T 3dl8_G          164 AGTMFLVWIADRITEKGI  181 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHCC
T ss_conf             999999999999987255


No 11 
>>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} (G:232-271,G:331-352)
Probab=99.56  E-value=1.7e-16  Score=124.03  Aligned_cols=62  Identities=52%  Similarity=1.047  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf             99886533232101101211664235643114442000023799999999986888887507777247999887530667
Q gi|254780241|r  235 VIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSSPTWIVGLVDSLGHG  314 (444)
Q Consensus       235 iV~v~~~~rrIPi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~  314 (444)
                      +||+|+++||||||||||+.++++++++++|||+|+|+||.                                       
T Consensus         1 VV~ve~A~RRIPIQYAkR~~G~k~~~gqssyLPLKIN~AG~---------------------------------------   41 (62)
T 3dl8_G            1 IVYVQEAERRIPIQYPGRQVGRQLYAGRKTYLPIKINPAGI---------------------------------------   41 (62)
T ss_dssp             HTCSCCCCCCCCCBCSSSCBCCCCCCCCCCCCCCCCCCCCT---------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC---------------------------------------
T ss_conf             99998762008767566663132357875055542340016---------------------------------------


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf             631699999999999999986237989999999963884476279
Q gi|254780241|r  315 RSFYMVLYSVFIVFFAFFYTAIVFNPKEAADNLKKHGGFIPGIRP  359 (444)
Q Consensus       315 ~~~y~i~y~ilii~Fs~f~~~i~~~P~~iAe~L~k~g~~IpGiRP  359 (444)
                                              ||-|.||||.|.|+||||+||
T Consensus        42 ------------------------~~~~~~~~~~~~~~~~~~~~~   62 (62)
T 3dl8_G           42 ------------------------NPVELAENLHKAGAFIPGVRP   62 (62)
T ss_dssp             ------------------------HHHHHHHTCCCCBSSSBCCCC
T ss_pred             ------------------------CHHHHHHHHHHCCCCCCCCCC
T ss_conf             ------------------------889999999986986789598


No 12 
>>2wwb_A Protein transport protein SEC61 subunit alpha isoform 1; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} (A:63-154)
Probab=99.34  E-value=9.4e-13  Score=100.11  Aligned_cols=75  Identities=20%  Similarity=0.322  Sum_probs=63.8

Q ss_pred             HHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99864277022204687354789999999999985215478641146368999998869999999999999999723556
Q gi|254780241|r   67 LFNMFSGGAVERMAVFSLGIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNG  146 (444)
Q Consensus        67 ~l~~~sGga~~~~sif~LGI~PyItASIi~QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~  146 (444)
                      +++...  |.+|+|+++|||+|++|||++||+|++.  ++.+.|.+ +++|..+|..||.++++++++||.+++.+-..+
T Consensus         2 w~R~i~--As~~GTLmeLGI~PIVTasiilQlL~g~--kli~vd~~-~~dr~lfq~~QKll~~i~~~~ea~~~V~sG~~g   76 (92)
T 2wwb_A            2 WMRVIL--ASNRGTLMELGISPIVTSGLIMQLLAGA--KIIEVGDT-PKDRALFNGAQKLFGMIITIGQSIVYVMTGMYG   76 (92)
T ss_dssp             HHHHHH--CSSCSSSCSSSSTHHHHHHHHHHHHHHH--CCCSCCSS-SSCSSCHHHHHHHHHHHHHHHHHHHHHHHTSSC
T ss_pred             HHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             998742--3222049997659999999999999717--11033205-365999999999999999999999999860266


No 13 
>>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} (G:272-330)
Probab=99.21  E-value=5.7e-12  Score=95.11  Aligned_cols=59  Identities=46%  Similarity=0.922  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             379999999998688888750777724799988753066763169999999999999998623
Q gi|254780241|r  275 VVPSIFASSLLLLPATIMGFIDVSSSPTWIVGLVDSLGHGRSFYMVLYSVFIVFFAFFYTAIV  337 (444)
Q Consensus       275 vmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~y~ilii~Fs~f~~~i~  337 (444)
                      |||+|||||++++|.+++++.++.    |..++.+.+++++|+|.++|++||++|||||+.+.
T Consensus         1 ViPiIFAssil~~P~ti~~~~~~~----~~~~i~~~f~~~~~~y~~~y~~LIi~FtyFYt~iv   59 (59)
T 3dl8_G            1 VIPIIFAQALLLIPSTLLNFVQNP----FIKVIADMFQPGAIFYNFLYVTFIVFFTYFYTAVL   59 (59)
T ss_dssp             SSHHHHHHHHHHHHHHHHHSCSSC----CCCTTTTTTTTTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             679999999998999999984167----89999998378983499999999999999999976


No 14 
>>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} (A:1-120)
Probab=80.37  E-value=1.7  Score=21.96  Aligned_cols=36  Identities=14%  Similarity=0.194  Sum_probs=24.6

Q ss_pred             HCCCHHHHHHHHHH------CCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             23798999999996------3884476279857999999999
Q gi|254780241|r  336 IVFNPKEAADNLKK------HGGFIPGIRPGDRTALHIDYVL  371 (444)
Q Consensus       336 i~~~P~~iAe~L~k------~g~~IpGiRPG~~T~~yL~~v~  371 (444)
                      +.++++++.+.+.|      ..+.|||+|||+.-...+++..
T Consensus        20 v~v~~~~~~~~~~k~~~~~~k~~~ipGFRkGKvP~~ii~~~~   61 (120)
T 1t11_A           20 ITVPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMY   61 (120)
T ss_dssp             EEECHHHHHHHHHHHHHHHHTTCCCTTSCSSCCCHHHHHHHH
T ss_pred             EEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf             998799999999999999971188899899988899999998


No 15 
>>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A (A:21-109)
Probab=59.22  E-value=6.7  Score=18.11  Aligned_cols=23  Identities=22%  Similarity=0.219  Sum_probs=17.1

Q ss_pred             HHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             96388447627985799999999
Q gi|254780241|r  348 KKHGGFIPGIRPGDRTALHIDYV  370 (444)
Q Consensus       348 ~k~g~~IpGiRPG~~T~~yL~~v  370 (444)
                      -+....|||+|||+.-..-+++.
T Consensus        15 ~~~~~~ipGFRkGKvP~~~i~k~   37 (89)
T 2nsc_A           15 LNQRVEIPGFRKGRIPKNVLKMK   37 (89)
T ss_dssp             HHTTCCCTTSCTTCCCHHHHHHH
T ss_pred             HHHHCCCCCCCCCCCCHHHHHHH
T ss_conf             98638899987998899999999


No 16 
>>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7 (1:)
Probab=59.19  E-value=3.2  Score=20.14  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=18.0

Q ss_pred             HCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             638844762798579999999999
Q gi|254780241|r  349 KHGGFIPGIRPGDRTALHIDYVLT  372 (444)
Q Consensus       349 k~g~~IpGiRPG~~T~~yL~~v~~  372 (444)
                      +..+.|||+|||+.-.+.+++...
T Consensus        35 ~k~~kipGFRkGKvP~~ii~k~~g   58 (112)
T 2d3o_1           35 ARDVRVPGFRPGKAPRKVIENRVG   58 (112)
T ss_dssp             HTTSCBTTBCTTCCCSTTHHHHTT
T ss_pred             HHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf             851889997798885899998856


No 17 
>>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} (A:1-117)
Probab=58.41  E-value=4.8  Score=19.01  Aligned_cols=33  Identities=12%  Similarity=0.077  Sum_probs=20.9

Q ss_pred             CCHHHHHHHH------HHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             7989999999------96388447627985799999999
Q gi|254780241|r  338 FNPKEAADNL------KKHGGFIPGIRPGDRTALHIDYV  370 (444)
Q Consensus       338 ~~P~~iAe~L------~k~g~~IpGiRPG~~T~~yL~~v  370 (444)
                      ++++++.+.+      .+....|||+|||+.-...+++.
T Consensus        19 v~~~~~~~~~~~~~~~~~k~~~ipGFRkGKvP~~ii~~~   57 (117)
T 1w26_A           19 IAADSIETAVKSELVNVAKKVRIDGFRKGKVPXNIVAQR   57 (117)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHTTCGGGCCSSSCHHHHHHH
T ss_pred             ECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf             979999999999999986608779989998889999999


No 18 
>>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} (A:)
Probab=58.18  E-value=5.7  Score=18.54  Aligned_cols=35  Identities=14%  Similarity=0.119  Sum_probs=22.3

Q ss_pred             CCHHHHHHHHH------HCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             79899999999------638844762798579999999999
Q gi|254780241|r  338 FNPKEAADNLK------KHGGFIPGIRPGDRTALHIDYVLT  372 (444)
Q Consensus       338 ~~P~~iAe~L~------k~g~~IpGiRPG~~T~~yL~~v~~  372 (444)
                      ++++++.+.+.      +....|||+|||+.-...+++-..
T Consensus        22 v~~~~~~~~~~k~~~~~~k~~kipGFRkGKvP~~ii~~~~~   62 (121)
T 1p9y_A           22 IAADSIETAVKSELVNVAKKVRIDGLRKGKVPMNIVAQRYG   62 (121)
T ss_dssp             ECHHHHHHHHHHHHHHHHTTCCCTTSCTTCSCHHHHHHHHH
T ss_pred             ECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             98999999999999999833888997889889999999985


No 19 
>>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} PDB: 3gu0_A (X:1-108)
Probab=52.50  E-value=8.9  Score=17.31  Aligned_cols=32  Identities=25%  Similarity=0.326  Sum_probs=19.7

Q ss_pred             CCHHHHHHHHH------HCCCCCCCCCCCHHHHHHHHH
Q ss_conf             79899999999------638844762798579999999
Q gi|254780241|r  338 FNPKEAADNLK------KHGGFIPGIRPGDRTALHIDY  369 (444)
Q Consensus       338 ~~P~~iAe~L~------k~g~~IpGiRPG~~T~~yL~~  369 (444)
                      +.++++.+.+.      +..+-|||+|+|+.-...+++
T Consensus        19 v~~~e~~~~~~~~~~~~~k~~~ipGFRkGKvP~~~i~k   56 (108)
T 3gty_X           19 FGAEEIAQAEDKAVRYLNQRVEIPGFRKGRIPKNVLKM   56 (108)
T ss_dssp             CCTTHHHHHHHHHHHHHHTSCCCCC--CCCCCSHHHHT
T ss_pred             ECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf             86999999999999998471777999999789999999


No 20 
>>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} (B:)
Probab=40.59  E-value=7.2  Score=17.88  Aligned_cols=16  Identities=19%  Similarity=0.156  Sum_probs=9.3

Q ss_pred             CCCHHHHHHCCCCHHH
Q ss_conf             9652778751258898
Q gi|254780241|r    1 MASAVEQFVSNLNFAS   16 (444)
Q Consensus         1 ~~~~~~~~~~~~~~~~   16 (444)
                      ||...||-+.+.+..+
T Consensus         1 ~~~~~ek~~~~~~~~~   16 (290)
T 3ixz_B            1 MAALQEKKSCSQRMEE   16 (290)
T ss_pred             CCHHHHHHHHHHHHHH
T ss_conf             9327665668888888


No 21 
>>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specificity, signaling, protein binding; NMR {Caenorhabditis elegans} (A:)
Probab=34.47  E-value=26  Score=14.36  Aligned_cols=23  Identities=17%  Similarity=0.307  Sum_probs=19.5

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             47864114636899999886999
Q gi|254780241|r  105 SLENLKKEGEQGRKVINQYTRYA  127 (444)
Q Consensus       105 ~l~~l~kege~gr~ki~~~tr~l  127 (444)
                      -++++|++||.--.|++..+|.|
T Consensus        15 LlekLq~sgevp~~KL~aLqkVL   37 (53)
T 1zl8_A           15 LMEHVQKTGEVNNAKLASLQQVL   37 (53)
T ss_dssp             HHHHHGGGSSSTHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             99999886999869999999999


No 22 
>>1y74_A LIN 7 homolog B; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} (A:)
Probab=30.64  E-value=24  Score=14.58  Aligned_cols=24  Identities=25%  Similarity=0.360  Sum_probs=19.9

Q ss_pred             HHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             478641146368999998869999
Q gi|254780241|r  105 SLENLKKEGEQGRKVINQYTRYAT  128 (444)
Q Consensus       105 ~l~~l~kege~gr~ki~~~tr~lt  128 (444)
                      -++++|+.||.-..|++..+|.|-
T Consensus        13 Lle~LQ~sgevp~~KL~aLqkVLq   36 (57)
T 1y74_A           13 LLERLQRSGELPPQKLQALQRVLQ   36 (57)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             999998869998399999999999


No 23 
>>1tvs_A Transactivator protein; transcription regulation; NMR {Equine infectious anemia virus} (A:)
Probab=21.63  E-value=20  Score=15.10  Aligned_cols=23  Identities=39%  Similarity=0.719  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf             89999999963884476279857
Q gi|254780241|r  340 PKEAADNLKKHGGFIPGIRPGDR  362 (444)
Q Consensus       340 P~~iAe~L~k~g~~IpGiRPG~~  362 (444)
                      |...-|||+|+.+-+||.--|++
T Consensus         7 p~taeenlqkssggvpg~ntG~q   29 (75)
T 1tvs_A            7 PGTAEENLQKSSGGVPGQNTGGQ   29 (75)
T ss_dssp             TTTHHHHTTCCCCCCCCCCCSSS
T ss_pred             CCCHHHHHHHCCCCCCCCCCCCC
T ss_conf             86278887651699988777765


Done!