Query gi|254780241|ref|YP_003064654.1| preprotein translocase subunit SecY [Candidatus Liberibacter asiaticus str. psy62] Match_columns 444 No_of_seqs 128 out of 1544 Neff 6.2 Searched_HMMs 33803 Date Tue May 24 02:12:25 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780241.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1rh5_A Preprotein translocase 100.0 0 0 735.3 22.4 395 13-438 13-435 (436) 2 >2akh_Y Preprotein translocase 100.0 0 0 686.0 37.2 357 81-437 1-360 (360) 3 >2zjs_Y Preprotein translocase 100.0 0 0 428.5 22.6 222 216-440 2-224 (224) 4 >2zjs_Y Preprotein translocase 100.0 0 0 377.1 19.9 179 21-199 1-184 (184) 5 >2ww9_A SEC sixty-one protein 100.0 0 0 358.7 9.6 209 221-443 6-249 (250) 6 >3din_C Preprotein translocase 100.0 0 0 348.7 8.9 172 13-184 4-183 (183) 7 >2wwb_A Protein transport prot 100.0 0 0 344.7 11.0 190 232-435 1-224 (225) 8 >3din_C Preprotein translocase 100.0 0 0 341.6 9.9 178 214-398 2-179 (180) 9 >2ww9_A SEC sixty-one protein 100.0 0 0 340.5 8.4 188 15-216 21-209 (215) 10 >3dl8_G Preprotein translocase 100.0 0 0 339.0 8.5 172 13-184 4-181 (181) 11 >3dl8_G Preprotein translocase 99.6 1.7E-16 5E-21 124.0 -1.2 62 235-359 1-62 (62) 12 >2wwb_A Protein transport prot 99.3 9.4E-13 2.8E-17 100.1 4.7 75 67-146 2-76 (92) 13 >3dl8_G Preprotein translocase 99.2 5.7E-12 1.7E-16 95.1 3.2 59 275-337 1-59 (59) 14 >1t11_A Trigger factor, TF; he 80.4 1.7 4.9E-05 22.0 3.2 36 336-371 20-61 (120) 15 >2nsc_A Trigger factor, TF; ch 59.2 6.7 0.0002 18.1 2.4 23 348-370 15-37 (89) 16 >2d3o_1 Trigger factor, TF; ri 59.2 3.2 9.5E-05 20.1 0.8 24 349-372 35-58 (112) 17 >1w26_A Trigger factor, TF; ch 58.4 4.8 0.00014 19.0 1.6 33 338-370 19-57 (117) 18 >1p9y_A Trigger factor, TF; al 58.2 5.7 0.00017 18.5 1.9 35 338-372 22-62 (121) 19 >3gty_X Trigger factor, TF; ch 52.5 8.9 0.00026 17.3 2.1 32 338-369 19-56 (108) 20 >3ixz_B Potassium-transporting 40.6 7.2 0.00021 17.9 0.2 16 1-16 1-16 (290) 21 >1zl8_A LIN-7; heterodimer, al 34.5 26 0.00076 14.4 2.3 23 105-127 15-37 (53) 22 >1y74_A LIN 7 homolog B; L27 d 30.6 24 0.0007 14.6 1.5 24 105-128 13-36 (57) 23 >1tvs_A Transactivator protein 21.6 20 0.00058 15.1 -0.3 23 340-362 7-29 (75) No 1 >>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} (A:) Probab=100.00 E-value=0 Score=735.34 Aligned_cols=395 Identities=17% Similarity=0.224 Sum_probs=354.8 Q ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHH Q ss_conf 88988358788999999999999998506798987398899998730355378899864277022204687354789999 Q gi|254780241|r 13 NFASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYISA 92 (444) Q Consensus 13 ~~~~~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyItA 92 (444) .+++.||++|+|+|++||++++++||+|++||+||+|++ .+.+++++++|||++++|+|+|||+||||| T Consensus 13 ~~~~~~~~~~l~~ki~~Tl~il~iy~ig~~IplpGi~~~-----------~~~~~~~~~~g~a~~~~slf~LGI~P~ItA 81 (436) T 1rh5_A 13 EVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQ-----------IPAIFEFWQTITASRIGTLITLGIGPIVTA 81 (436) T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCC-----------CCSCCTTHHHHHTCCTTBTTTTTTHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-----------CCCHHHHHHHHHCCCCCHHHHHCHHHHHHH T ss_conf 877988889788799999999999998336875888988-----------653789999872431042999772999999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 99999998521547864114636899999886999999999999999972355676225875047999999999999999 Q gi|254780241|r 93 SIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFL 172 (444) Q Consensus 93 SIi~QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~~~~~~~~~~~~~~~il~L~aGs~il 172 (444) ||+||||+.. +++++||+||+||+|+|++||++|+++|++||++++.++. ..+.+..+++.++++|++|++++ T Consensus 82 sIi~QLl~~~--~l~~~~~~~~~gr~k~~~~tr~ltl~~a~iqa~~~~~~~~-----~~~~~~~~~~~~~~~L~~Gs~i~ 154 (436) T 1rh5_A 82 GIIMQLLVGS--GIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGA-----FGILTPLLAFLVIIQIAFGSIIL 154 (436) T ss_dssp HHHHHHHHHH--TTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-----SCCCCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHC--HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCCHHHHHHHHHHHHHHHHHH T ss_conf 9999999735--2767630267589999999999999999999999996221-----57886189999999999999999 Q ss_pred HHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999874088987520362101465767887433332001------232158999999999999999998865332321 Q gi|254780241|r 173 VWLGEQITMRGIGNGVSLIIFSGIVAGLPSSLVSVLELGRV------GSISTPLMLLIFSSTVAVIALVIFFERAQRRLL 246 (444) Q Consensus 173 ~wl~e~It~~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~------~~~~~~~~l~~~~~~l~vi~~iV~v~~~~rrIP 246 (444) +|+||+|||||+|||+|++|++||++++|+++.+.++.... +.......+..+..++++++++||+|+++|||| T Consensus 155 iwL~e~it~~GiGnG~SliI~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~Ip 234 (436) T 1rh5_A 155 IYLDEIVSKYGIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIP 234 (436) T ss_dssp HHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHTTTTCCCGGGTHHHHHHHHHHHHHHHHTTCEEEEE T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99999985028564528999999999988750150469999998874033218899999999999999999878742223 Q ss_pred HCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCC--------HHHHHHHHHHCCC----- Q ss_conf 011012116642356431144420000237999999999868888875077772--------4799988753066----- Q gi|254780241|r 247 IQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSS--------PTWIVGLVDSLGH----- 313 (444) Q Consensus 247 i~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~--------~~~~~~~~~~~~~----- 313 (444) +||+| .+++++|+|+|+||+|+||+||||+++++|++++++++.... .+|..++.+++++ T Consensus 235 i~~~~-------~~~~~~~~PiKln~~GvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~~~~~~~~i~~yls~p~~~~ 307 (436) T 1rh5_A 235 LAHGR-------IKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAYYLSTPYGLS 307 (436) T ss_dssp CCCSS-------STTCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCBCSSSBSSSTTGGGCCCCSSS T ss_pred CCCCC-------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCHHH T ss_conf 33432-------23444467755440124689999999985899988632036653345677745788999958841121 Q ss_pred -------CCCHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHCCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHH Q ss_conf -------763169999999999999998623-798999999996388447627985799-99999999999999999999 Q gi|254780241|r 314 -------GRSFYMVLYSVFIVFFAFFYTAIV-FNPKEAADNLKKHGGFIPGIRPGDRTA-LHIDYVLTRVTVVGAGYLVC 384 (444) Q Consensus 314 -------~~~~y~i~y~ilii~Fs~f~~~i~-~~P~~iAe~L~k~g~~IpGiRPG~~T~-~yL~~v~~rit~~Ga~~l~~ 384 (444) +.++|.++|.+++++|++||+.++ +||||+||||+|+|++|||+||||+|. +||+|+++|+|++||+++++ T Consensus 308 ~~~~~~~~~~~y~~~~~~l~i~Fs~f~~~~~~~~p~~ia~~l~k~g~~IpGvrpg~~T~~~~L~~~i~~~t~~G~~~l~~ 387 (436) T 1rh5_A 308 SVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGF 387 (436) T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 02357641278999999999999999999867887999999998598077879994149999998999999999999999 Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999984884100257999999999999999999999985265643110 Q gi|254780241|r 385 VCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQIQGYLIAQQYEGVFKKSR 438 (444) Q Consensus 385 la~~p~~~~~~~~~~~~~gGTslLI~Vgv~l~~~~qi~a~~~~~~Y~~~~~~~~ 438 (444) +|++|++++..+ ||||+||+|||++|++||+++++.+++|++++||.+ T Consensus 388 la~~p~~~~~~~------~gtsilI~V~v~~~~~~qi~~~~~~~~y~~~~~~~~ 435 (436) T 1rh5_A 388 LATIANFIGALG------GGTGVLLTVSIVYRMYEQLLRERTSELHPAIAKLLN 435 (436) T ss_dssp HHHHHHHHCCTT------CSHHHHHHHHHHHHHHHHHHTTCC------------ T ss_pred HHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 999999998713------378799999999999999999999987289998717 No 2 >>2akh_Y Preprotein translocase SECY subunit; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_Y (Y:41-400) Probab=100.00 E-value=0 Score=685.95 Aligned_cols=357 Identities=50% Similarity=0.901 Sum_probs=345.9 Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCCCHH Q ss_conf 6873547899999999999852154786411463689999988699999999999999997235567---6225875047 Q gi|254780241|r 81 VFSLGIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQ---GIVSDSDYFF 157 (444) Q Consensus 81 if~LGI~PyItASIi~QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~---~~~~~~~~~~ 157 (444) +|+|||+|||||||+||||+..+|+++|+|||||+||||+|++|||+|+++|++||++++.++++.. +...+++..+ T Consensus 1 lf~LGI~P~ItasIi~QlL~~~~p~l~~l~~~~~~gr~k~~~~tr~ltl~~a~iqa~~~~~~~~~~~~~~~~~~~~~~~~ 80 (360) T 2akh_Y 1 IFALGIMPYISASIIIQLLTVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAF 80 (360) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHH T ss_conf 99974389999999999999876769998651754389999999999999999999999987623677554233783699 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999999999874088987520362101465767887433332001232158999999999999999998 Q gi|254780241|r 158 VFSTIITLLGGTMFLVWLGEQITMRGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGSISTPLMLLIFSSTVAVIALVIF 237 (444) Q Consensus 158 ~~~~il~L~aGs~il~wl~e~It~~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~~~~~~~~~l~~~~~~l~vi~~iV~ 237 (444) .+.++++|++|+++++|+||+|||||+|||+|++|++||++++|+.+.+.++.....+.+....++.+..+++++++++| T Consensus 81 ~~~~i~~L~~G~~i~~wL~e~i~~~GiGnG~SllI~~~I~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 160 (360) T 2akh_Y 81 YFTAVVSLVTGTMFLMWLGEQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFLVLLLVAVLVFAVTFFVVF 160 (360) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEE T ss_conf 99999999999999999888987537477815687899987889999998876126852499999999999999886046 Q ss_pred HHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCH Q ss_conf 86533232101101211664235643114442000023799999999986888887507777247999887530667631 Q gi|254780241|r 238 FERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSSPTWIVGLVDSLGHGRSF 317 (444) Q Consensus 238 v~~~~rrIPi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (444) +|+++||||+||+|++.+++.++++++|+|+|+||+||||+|||++++++|++++++++....++|..++.+++++++|+ T Consensus 161 ~~~~~~~Ipi~~~~~~~~~~~~~~~~~~iPiKln~agvmPiIfassll~~p~~i~~~l~~~~~~~~~~~i~~~~s~~~~~ 240 (360) T 2akh_Y 161 VERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGGTGWNWLTTISLYLQPGQPL 240 (360) T ss_pred EEECCCCCEEEEHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHH T ss_conf 76411001122110015655456654534001278888899999999999999998732243178999999870899829 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 69999999999999998623798999999996388447627985799999999999999999999999999999999848 Q gi|254780241|r 318 YMVLYSVFIVFFAFFYTAIVFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTG 397 (444) Q Consensus 318 y~i~y~ilii~Fs~f~~~i~~~P~~iAe~L~k~g~~IpGiRPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~ 397 (444) |.++|++++++|+|||+..++||||+||||+|+|++|||+||||+|+|||+|+++|++++||++++++|++|++++..++ T Consensus 241 ~~~~y~vlii~f~~~~~~~~~~p~~ia~~l~k~g~~IpGvrpg~~T~~~L~~~i~~~~~~G~i~l~~la~~p~~~~~~~~ 320 (360) T 2akh_Y 241 YVLLYASAIIFFCFFYTALVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLVGALYITFICLIPEFMRDAMK 320 (360) T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999999999993789999999998589688989981359999999999999999999999999999999609 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 8410025799999999999999999999998526564311 Q gi|254780241|r 398 VPVSLSGTSLLIIVSVVLDTIVQIQGYLIAQQYEGVFKKS 437 (444) Q Consensus 398 ~~~~~gGTslLI~Vgv~l~~~~qi~a~~~~~~Y~~~~~~~ 437 (444) .+..+||||++|+|+|++|++||+++++.+++|++++||+ T Consensus 321 ~~~~~~gt~ili~V~vi~~~~~qi~~~~~~~~y~~~~~~~ 360 (360) T 2akh_Y 321 VPFYFGGTSLLIVVVVIMDFMAQVQTLMMSSQYESALKKA 360 (360) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 8802637889999999999999999999899877873479 No 3 >>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, protein transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y (Y:211-434) Probab=100.00 E-value=0 Score=428.49 Aligned_cols=222 Identities=32% Similarity=0.656 Sum_probs=211.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 21589999999999999999988653323210110121166423564311444200002379999999998688888750 Q gi|254780241|r 216 ISTPLMLLIFSSTVAVIALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFI 295 (444) Q Consensus 216 ~~~~~~l~~~~~~l~vi~~iV~v~~~~rrIPi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~ 295 (444) .+....++.++.++++++++||+|+++||||+||+|+..+++.++++++|+|+|+||+||||+||||+++++|+++++++ T Consensus 2 ~~~~~~l~~~~~~l~~~~~~v~~~~~~~kIPi~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~ 81 (224) T 2zjs_Y 2 VNLVAFLFFLAFIVLAFAGMAAVQQAERRIPVQYARKVVGGRVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPF 81 (224) T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEECC-------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHTTC T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHCCCCCCCCCCEEEEEECCCCEEECHHHHHHHHHHHHHHHHCC T ss_conf 31479999999999999999999974541201211331354345787403432022001423799999886478876304 Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 77772479998875306676316999999999999999862379899999999638844762798579999999999999 Q gi|254780241|r 296 DVSSSPTWIVGLVDSLGHGRSFYMVLYSVFIVFFAFFYTAIVFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTRVT 375 (444) Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~y~i~y~ilii~Fs~f~~~i~~~P~~iAe~L~k~g~~IpGiRPG~~T~~yL~~v~~rit 375 (444) ++. .+..++.+++++++++|.++|++++++|+|||+.+++||||+||||+|||++|||+||||+|++||+|+++|+| T Consensus 82 ~~~---~~~~~~~~~l~~~~~~~~i~y~~lii~f~~f~s~~~~~p~diAe~Lkk~g~~IpGirpG~~T~~yL~k~i~~~t 158 (224) T 2zjs_Y 82 QDN---PVLQGIANFFNPTRPSGLFIEVLLVILFTYVYTAVQFDPKRIAESLREYGGFIPGIRPGEPTVKFLEHIVSRLT 158 (224) T ss_dssp TTC---HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHTTTTTEECTTBCSSHHHHHHHHHHHHHHH T ss_pred CCH---HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHH T ss_conf 413---67888888617887469999999999999999997088899999999779884375898668999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999999999999999999984884-10025799999999999999999999998526564311016 Q gi|254780241|r 376 VVGAGYLVCVCIFPEALIAVTGVP-VSLSGTSLLIIVSVVLDTIVQIQGYLIAQQYEGVFKKSRSK 440 (444) Q Consensus 376 ~~Ga~~l~~la~~p~~~~~~~~~~-~~~gGTslLI~Vgv~l~~~~qi~a~~~~~~Y~~~~~~~~~~ 440 (444) ++||++++++|++|++++..++.+ ..+||||+||+||+++|++||+++++.+++|++++||+|.| T Consensus 159 ~~Ga~~l~~ia~~p~l~~~~~~~~~~~~ggTslLI~Vgv~~~~~~qi~~~~~~~~Y~~~~k~~~~~ 224 (224) T 2zjs_Y 159 LWGALFLGLVTLLPQIIQNLTGIHSIAFSGIGLLIVVGVALDTLRQVESQLMLRSYEGFLSRGRLR 224 (224) T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCCGGGSSHHHHHHHHHHHHHHHHHHHHHHHC------------ T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 999999999999999999983767636633878858999999999999999998707886324689 No 4 >>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, protein transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y (Y:12-195) Probab=100.00 E-value=0 Score=377.12 Aligned_cols=179 Identities=44% Similarity=0.846 Sum_probs=171.8 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 78899999999999999850679898739889999873035537889986427702220468735478999999999998 Q gi|254780241|r 21 KDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYISASIIVQLIA 100 (444) Q Consensus 21 ~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyItASIi~QLL~ 100 (444) ||+|+|++||++++++||+|++||+||+|.+++++..+.++++++++++.++|||++|+|+|+|||+|||||||+||||+ T Consensus 1 ~el~~Ki~~Tl~~l~i~rlg~~IplpGi~~~~~~~~~~~~~~~~~~~~~~~sgga~~~~SifsLGI~P~ItasIi~QlL~ 80 (184) T 2zjs_Y 1 PELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEFLRTAQGGVFGIINLFSGGNFERFSIFALGIMPYITAAIIMQILV 80 (184) T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCBCTTBCHHHHHHHHHSSGGGTTHHHHHHTTSCGGGTBTTSSTTHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHHH T ss_conf 88999999999999999996238899869999999987345307889998616653105299862489999999999998 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 52154786411463689999988699999999999999997235567-----6225875047999999999999999999 Q gi|254780241|r 101 ATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQ-----GIVSDSDYFFVFSTIITLLGGTMFLVWL 175 (444) Q Consensus 101 ~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~-----~~~~~~~~~~~~~~il~L~aGs~il~wl 175 (444) ..+|+++|+|||||+||||+|++|||+|+++|++||++++.++++.+ ....+++..+.+.++++|++|+++++|+ T Consensus 81 ~~~p~l~~~~~~~~~gr~k~~~~tr~ltl~~a~iqa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~i~~wl 160 (184) T 2zjs_Y 81 TVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVAGIALLLWM 160 (184) T ss_dssp HHSHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHHHHHHHHHHHHHH T ss_pred HCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 57310765321324469999999999999999999999999985057764014656804789999999999999999999 Q ss_pred HHHHHHCCCCCCCHHHHCCCHHHH Q ss_conf 998740889875203621014657 Q gi|254780241|r 176 GEQITMRGIGNGVSLIIFSGIVAG 199 (444) Q Consensus 176 ~e~It~~GIGnG~SLiI~~gIi~~ 199 (444) ||+|||||+|||+|++|++||+++ T Consensus 161 ~e~it~~GiGnG~SliI~~~I~~~ 184 (184) T 2zjs_Y 161 AERITEYGIGNGTSLIIFAGIVVE 184 (184) T ss_dssp HHHHHHTSSSCHHHHHHHHHHHHT T ss_pred HHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 888765512667123443647874 No 5 >>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phosphoprotein, signal sequence, membrane, ribosome, cytoplasm; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A (A:241-490) Probab=100.00 E-value=0 Score=358.74 Aligned_cols=209 Identities=15% Similarity=0.144 Sum_probs=180.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 99999999999999998865332321011012116642356431144420000237999999999868888875077772 Q gi|254780241|r 221 MLLIFSSTVAVIALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSS 300 (444) Q Consensus 221 ~l~~~~~~l~vi~~iV~v~~~~rrIPi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~ 300 (444) .++.++.++++++++||+|+++||||+||+| .+++++|+|+|+||+|+||+|||++++++|++++++++.... T Consensus 6 ~l~~~~~~i~~~~~~v~~q~~~~~IPi~~~~-------~~~~~~~~PiKln~agvmPiIfa~sll~~~~~i~~~l~~~~~ 78 (250) T 2ww9_A 6 NLTTTIIVLAIAIIVCYLQSVRVELPIRSTR-------ARGTNNVYPIKLLYTGCLSVLFSYTILFYIHIFAFVLIQLVA 78 (250) T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEECCCBCSS-------SSSBCCCCEECHHHHTHHHHHHHHHHHHHCSSSCSTTTHHHH T ss_pred HHHHHHHHHHHHEEEEEEEEEEEEECCCCCC-------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 9999999998872799964337984032143-------357774021014533430799999999879999999987621 Q ss_pred H----HHHHHHH------------------HHC------------CCCCCHHHHHHHHHHHHHHHHHHHHC-CCHHHHHH Q ss_conf 4----7999887------------------530------------66763169999999999999998623-79899999 Q gi|254780241|r 301 P----TWIVGLV------------------DSL------------GHGRSFYMVLYSVFIVFFAFFYTAIV-FNPKEAAD 345 (444) Q Consensus 301 ~----~~~~~~~------------------~~~------------~~~~~~y~i~y~ilii~Fs~f~~~i~-~~P~~iAe 345 (444) + ++..+.. .++ .++.++|.++|++++++|++||+.+. .||||+|| T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~~~~~~~gl~~yl~~p~~~~~~~~~~~~~~~y~~~~~~l~i~Fs~f~~~i~~~~pkdia~ 158 (250) T 2ww9_A 79 KNEPTHIICKIMGHYENANNLLAVPTFPLSLLAPPTSFFKGVTQQPLTFITYSAFILVTGIWFADKWQAISGSSARDVAL 158 (250) T ss_dssp HCCCCSSSCTTSBCCSCCSSSSCSCSSBSCCSSCCCCSSCCCCSCSHHHHHHHHHHHHHHHHHHHHHHHSCSSCHHHHHH T ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH T ss_conf 22406899999875156677655664331122687313334330415899999999999999999999970899999999 Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99963884476279857999999999999999999999999999999998488410025799999999999999999999 Q gi|254780241|r 346 NLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQIQGYL 425 (444) Q Consensus 346 ~L~k~g~~IpGiRPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~~~~~gGTslLI~Vgv~l~~~~qi~a~~ 425 (444) ||+|+|++|||+||| +|++||+|+++|+|++||++++++|++|++++..+ +|||+||+||+++|++||++++. T Consensus 159 ~L~k~g~~IpG~Rp~-~t~~yL~k~i~~~t~~G~~~l~~la~~p~ll~~~~------~gtsiLI~V~v~~~~~~qi~~~~ 231 (250) T 2ww9_A 159 EFKDQGITLMGRREQ-NVAKELNKVIPIAAVTGASVLSLITVIGESLGLKG------KAAGIVVGIAGGFSLLEVITIEY 231 (250) T ss_dssp HHHHHHHTSSSCCCC-CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS------SHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999869957798983-37999998899999999999999999999997502------55558999999999999999999 Q ss_pred HHHHHHHHHHHHHCCCCC Q ss_conf 998526564311016777 Q gi|254780241|r 426 IAQQYEGVFKKSRSKKKN 443 (444) Q Consensus 426 ~~~~Y~~~~~~~~~~~~~ 443 (444) .+++|++++||...|++. T Consensus 232 ~~~~y~~~l~~~~~~~~~ 249 (250) T 2ww9_A 232 QQSGGQSALNQVLGVPGA 249 (250) T ss_dssp HTTCSSCSTTSSCCCCCC T ss_pred HHHHHHHHHHHHCCCCCC T ss_conf 998648999986388689 No 6 >>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP- binding, cytoplasm, inner membrane, nucleotide-binding; HET: ADP; 4.50A {Thermotoga maritima MSB8} (C:1-183) Probab=100.00 E-value=0 Score=348.75 Aligned_cols=172 Identities=41% Similarity=0.794 Sum_probs=161.0 Q ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHC-----CCCHHHHHHHHCCCCHHHHHHHHHCCH Q ss_conf 889883587889999999999999985067989873988999987303-----553788998642770222046873547 Q gi|254780241|r 13 NFASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSK-----SAGIFGLFNMFSGGAVERMAVFSLGIM 87 (444) Q Consensus 13 ~~~~~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~-----~~~~~~~l~~~sGga~~~~sif~LGI~ 87 (444) .+++.||++|+|+|++||++++++||+|++||+||+|.+++.+.++++ +++++++++.++|||++|+|+|+|||+ T Consensus 4 ~~~~~~~~~~l~~Kil~Tl~il~iyr~g~~IplpGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGga~~~~sif~LGI~ 83 (183) T 3din_C 4 AFKNAFKIPELRDRIIFTFLALIVFRMGIYIPVPGLNLEAWGEIFRRIAETAGVAGILSFYDVFTGGALSRFSVFTMSVT 83 (183) T ss_dssp ----CCSCSCCSSHHHHHHHHHHHHHHHHSCSSCCCCC--------------------CTTHHHHCSSSSCCCSSSSSHH T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHCCHHHHHHH T ss_conf 89999757899999999999999999725288998598999999997540244201888998751422420509986348 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCCCHHHHHHHHH Q ss_conf 89999999999985215478641146368999998869999999999999999723556---762258750479999999 Q gi|254780241|r 88 PYISASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNG---QGIVSDSDYFFVFSTIIT 164 (444) Q Consensus 88 PyItASIi~QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~---~~~~~~~~~~~~~~~il~ 164 (444) |||||||+||+|+..+|+++|+|||||+||+|+|++|||+|+++|++||++++.++++. .+...+++..+++.++++ T Consensus 84 P~ItAsIi~QlL~~~~p~l~~l~~~~~~gr~k~~~~tr~ltl~~a~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (183) T 3din_C 84 PYITASIILQLLASVMPSLKEMLREGEEGRKKFAKYTRRLTLLIGGFQAFFVSFSLARSNPDMVAPGVNVLQFTVLSTMS 163 (183) T ss_dssp HHHHHHHHHHHHHHHSCSSSSCSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCCSSHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH T ss_conf 99999999999985214343113446466899999999999999999999999998606987446657416899999999 Q ss_pred HHHHHHHHHHHHHHHHHCCC Q ss_conf 99999999999998740889 Q gi|254780241|r 165 LLGGTMFLVWLGEQITMRGI 184 (444) Q Consensus 165 L~aGs~il~wl~e~It~~GI 184 (444) |++||++++|+||+|||||| T Consensus 164 lv~Gs~il~wL~e~It~~GI 183 (183) T 3din_C 164 MLAGTMFLLWLGERITEKGI 183 (183) T ss_dssp HHHHHHHHHHHHHHHTTTTC T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999888742 No 7 >>2wwb_A Protein transport protein SEC61 subunit alpha isoform 1; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} (A:252-476) Probab=100.00 E-value=0 Score=344.67 Aligned_cols=190 Identities=19% Similarity=0.278 Sum_probs=166.6 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH----- Q ss_conf 999998865332321011012116642356431144420000237999999999868888875077772479998----- Q gi|254780241|r 232 IALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSSPTWIVG----- 306 (444) Q Consensus 232 i~~iV~v~~~~rrIPi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~----- 306 (444) ++++||+|+++||||++|+| .+++++|+|+|+||+|+||+|||++++++|++++++++.....++... T Consensus 1 f~~~v~~~~~~~~IPi~~~~-------~~~~~~~lPiKln~~GvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~l~~~ 73 (225) T 2wwb_A 1 FAVVIYFQGFRVDLPIKSAR-------YRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTW 73 (225) T ss_dssp HHHHHHHHHCCBCCCCCBCS-------SSSBCSCCCBCTTTSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHCSS T ss_pred HHHHHHHHEEEEEECCCCCC-------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH T ss_conf 97643321036774144333-------46876666743343232109999999987999999972137530577876655 Q ss_pred ----------------HHHHCCC------------CCCHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHCCCCCCCC Q ss_conf ----------------8753066------------763169999999999999998623-79899999999638844762 Q gi|254780241|r 307 ----------------LVDSLGH------------GRSFYMVLYSVFIVFFAFFYTAIV-FNPKEAADNLKKHGGFIPGI 357 (444) Q Consensus 307 ----------------~~~~~~~------------~~~~y~i~y~ilii~Fs~f~~~i~-~~P~~iAe~L~k~g~~IpGi 357 (444) +..++.+ +.++|.++|++++++|++||+.+. +||||+||||+|+|++|||+ T Consensus 74 ~~~~~~~~~~~~~~~g~~yYl~~p~~~~~~~~~p~~~~iy~~~~~~l~i~Fs~~~~~i~~~~pk~iA~~lkk~g~~IpG~ 153 (225) T 2wwb_A 74 SDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGH 153 (225) T ss_dssp STTCSCTTSSSCCSSSHHHHTSCCSSSSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTTCCC T ss_pred HHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC T ss_conf 20023565556610045655168634888875430369999999999999999999960899999999999869927898 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 798579999999999999999999999999999999984884100257999999999999999999999985265643 Q gi|254780241|r 358 RPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQIQGYLIAQQYEGVFK 435 (444) Q Consensus 358 RPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~~~~~gGTslLI~Vgv~l~~~~qi~a~~~~~~Y~~~~~ 435 (444) |||+ |+|||+|+++|+|++||++++++|++|++++..+ +|||+||+|||++|++||+++++.+++|++++| T Consensus 154 Rpg~-t~~~L~~~i~~~t~~G~~~l~~la~~p~~~~~~~------~gtsilI~V~v~~~~~~~i~~~~~~~~y~~~~~ 224 (225) T 2wwb_A 154 RETS-MVHELNRYIPTAAAFGGLCIGALSVLADFLGAIG------SGTGILLAVTIIYQYFEIFVKEQSEVGSMGALL 224 (225) T ss_dssp CTTT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSS------CHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCSC T ss_pred CCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 9972-4999999999999999999999999999998704------478799999999999999999986567555205 No 8 >>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP- binding, cytoplasm, inner membrane, nucleotide-binding; HET: ADP; 4.50A {Thermotoga maritima MSB8} (C:208-387) Probab=100.00 E-value=0 Score=341.58 Aligned_cols=178 Identities=33% Similarity=0.735 Sum_probs=166.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 23215899999999999999999886533232101101211664235643114442000023799999999986888887 Q gi|254780241|r 214 GSISTPLMLLIFSSTVAVIALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMG 293 (444) Q Consensus 214 ~~~~~~~~l~~~~~~l~vi~~iV~v~~~~rrIPi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~ 293 (444) ++.+....++.++.++++++++||+|+++||||+||+|+..++++++++++|+|+|+||+||||+||||+++++|+++++ T Consensus 2 g~~~~~~~l~~~~~~~~i~~~~v~~~~~~~kIPi~~~~~~~~~~~~~~~~~yiPiKln~agvmPiIfassll~~p~~i~~ 81 (180) T 3din_C 2 GGLNLLEWIFLIAVALITIFGIILVQQAERRITIQYARRVTGRRVYGGASTYLPIKVNQGGVIPIIFASAIVSIPSAIAS 81 (180) T ss_dssp CCSCTHHHHHHHHHHHHHHHHHTTTCCBCCCCCCCBTTTBCCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHTT T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 00017999999999999999999999999876422001002533357866512211568875699999999855899998 Q ss_pred HHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 50777724799988753066763169999999999999998623798999999996388447627985799999999999 Q gi|254780241|r 294 FIDVSSSPTWIVGLVDSLGHGRSFYMVLYSVFIVFFAFFYTAIVFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTR 373 (444) Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~y~i~y~ilii~Fs~f~~~i~~~P~~iAe~L~k~g~~IpGiRPG~~T~~yL~~v~~r 373 (444) +++... +.+.+++++|+|.++|++++++|+|||+..++||||+||||+|+|++|||+||||+|+|||+|+++| T Consensus 82 ~l~~~~-------~~~~~~~~~~~~~~~y~~liiff~~~~~~~~~~pkdiAe~L~k~g~~IpGvRpG~~T~~yL~~~i~~ 154 (180) T 3din_C 82 ITNNET-------LKNLFRAGGFLYLLIYGLLVFFFTYFYSVVIFDPREISENIRKYGGYIPGLRPGRSTEQYLHRVLNR 154 (180) T ss_dssp SSTTCC-------CCCCSSTTHHHHHHHHHHHHHHHHHHHHTCTTHHHHHTTSCCCCBCSSCCCCCTTHHHHHHHHHHHH T ss_pred HCCCCC-------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 717730-------1231378871689999999999999999980677999999998697716989975689999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999999999999998488 Q gi|254780241|r 374 VTVVGAGYLVCVCIFPEALIAVTGV 398 (444) Q Consensus 374 it~~Ga~~l~~la~~p~~~~~~~~~ 398 (444) +|++||++++++|++|++++.++++ T Consensus 155 ~t~~G~i~l~~ia~~p~l~~~~~~~ 179 (180) T 3din_C 155 VTFIGAVFLVVIALLPYLVQGAIKV 179 (180) T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9999999999999999999986388 No 9 >>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phosphoprotein, signal sequence, membrane, ribosome, cytoplasm; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A (A:1-215) Probab=100.00 E-value=0 Score=340.50 Aligned_cols=188 Identities=18% Similarity=0.194 Sum_probs=168.9 Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHH Q ss_conf 98835878899999999999999850679898739889999873035537889986427702220468735478999999 Q gi|254780241|r 15 ASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYISASI 94 (444) Q Consensus 15 ~~~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyItASI 94 (444) ++.||++|+|+|++||++++++||+| +||+||+|.++.+ +.+.++++.++|||++|+|+|+|||+||||||| T Consensus 21 ~~~~~~~~l~~ki~~T~~il~iy~lg-~IplpGi~~~~~~-------~~~~~~~~~~~g~a~~~~slf~LGI~P~ItasI 92 (215) T 2ww9_A 21 ELPFEKLPFDDKIVYTIFAGLIYLFA-QFPLVGLPKATTP-------NVNDPIYFLRGVFGCEPRTLLEFGLFPNISSGL 92 (215) T ss_dssp CCCCCCCCSHHHHHHHHHHHHHTTCC-SSCCSCHHHHTTT-------CSSCCCTTTHHHHTCCSSSTTSSTTHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCCCCCHHHHH-------HHCCHHHHHHHHHCCCHHHHHHHCHHHHHHHHH T ss_conf 48888998888999999999999851-4687997855643-------011569999997331110599977399999999 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99999852154786411463689999988699999999999999997235567622587504799999999999999999 Q gi|254780241|r 95 IVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVW 174 (444) Q Consensus 95 i~QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~~~~~~~~~~~~~~~il~L~aGs~il~w 174 (444) +||||+. |+++++|||+|+||+|+|++||++|+++|++||++++.... ...+.+..+++.++++|++|+++++| T Consensus 93 i~QlL~~--~~l~~~~~~~~~gr~k~~~~tr~lti~~a~iqs~~~~~~~~----~~~~~~~~~~~~~~l~L~~Gs~i~~w 166 (215) T 2ww9_A 93 ILQLLAG--LKVIKVNFKIQSDRELFQSLTKVFAIVQYVILTNIFIFAGY----FGDDLSVVQIGLINFQLVGAGIFTTL 166 (215) T ss_dssp HHHHHHH--HTSSCCCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----SSCCCSTTHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHH--CHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 9999863--60766261367679999999999999999999999999975----16674315789999999757899999 Q ss_pred HHHHHHH-CCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCC Q ss_conf 9998740-88987520362101465767887433332001232 Q gi|254780241|r 175 LGEQITM-RGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGSI 216 (444) Q Consensus 175 l~e~It~-~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~~~~ 216 (444) +||+||| ||+|||+|++|++||++++|+++.+.+.....++. T Consensus 167 l~e~It~~yGiGnGiSliI~~~I~~~i~~~~~~~~~~~~~~~~ 209 (215) T 2ww9_A 167 LAEVIDKGFGFSSGAMIINTVVIATNLVADTFGVSQIKVGEDD 209 (215) T ss_dssp HHHHHHTTSSSSCHHHHHHHHHHHHHHHHHHTCCCCCCCCSSC T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCC T ss_conf 9988715545014689999999999999863042020246764 No 10 >>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} (G:1-181) Probab=100.00 E-value=0 Score=338.96 Aligned_cols=172 Identities=38% Similarity=0.800 Sum_probs=161.8 Q ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHH Q ss_conf 88988358788999999999999998506798987398899998730355378899864277022204687354789999 Q gi|254780241|r 13 NFASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYISA 92 (444) Q Consensus 13 ~~~~~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyItA 92 (444) .+++.||+||+|+|++||++++++||+|++||+||+|.+++++..+.++++..+++++++|||++|+|+|+|||+||||| T Consensus 4 ~~~~~~~~~~l~~Kil~Tl~il~iyrlg~~Iplpgvd~~~~~~~~~~~~~~~~~~~~~~sgga~~~~SifsLGI~P~ItA 83 (181) T 3dl8_G 4 YLKALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEALRDFLKAFEGSVFALYDIFSGGNLGRLTVFALGVMPYISA 83 (181) T ss_dssp ----CCSCCCCHHHHHHHHHHHHHHHHHHHCSSCCCC---------------CCSSSSSSCCSSSCCCSSSSSHHHHHHH T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCHHCCCHHHHCCHHHHHH T ss_conf 89988576999999999999999999852288998699999999874355389999997042153041887165889999 Q ss_pred HHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCCCHHHHHHHHHHH Q ss_conf 999999985215478641-1463689999988699999999999999997235567-----6225875047999999999 Q gi|254780241|r 93 SIIVQLIAATVPSLENLK-KEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQ-----GIVSDSDYFFVFSTIITLL 166 (444) Q Consensus 93 SIi~QLL~~~~P~l~~l~-kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~-----~~~~~~~~~~~~~~il~L~ 166 (444) ||+||||+...|.++|++ ||||+||||+|++|||+|+++|++||++++.++.+.. ....+++..+++.++++|+ T Consensus 84 sIi~Qll~~~~~~~~~~~~~eg~~gr~k~~~~tr~ltl~ia~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 163 (181) T 3dl8_G 84 SIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLV 163 (181) T ss_dssp HHHHHHHHHHSSCSSSCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCCSSSTTTTHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHH T ss_conf 99999998514317763124446789999999999999999999999999962035766540231750999999999999 Q ss_pred HHHHHHHHHHHHHHHCCC Q ss_conf 999999999998740889 Q gi|254780241|r 167 GGTMFLVWLGEQITMRGI 184 (444) Q Consensus 167 aGs~il~wl~e~It~~GI 184 (444) +|+++++|+||+|||||| T Consensus 164 aGs~~~iwL~e~it~~GI 181 (181) T 3dl8_G 164 AGTMFLVWIADRITEKGI 181 (181) T ss_dssp HHHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHHHHCC T ss_conf 999999999999987255 No 11 >>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} (G:232-271,G:331-352) Probab=99.56 E-value=1.7e-16 Score=124.03 Aligned_cols=62 Identities=52% Similarity=1.047 Sum_probs=57.5 Q ss_pred HHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC Q ss_conf 99886533232101101211664235643114442000023799999999986888887507777247999887530667 Q gi|254780241|r 235 VIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSSPTWIVGLVDSLGHG 314 (444) Q Consensus 235 iV~v~~~~rrIPi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~ 314 (444) +||+|+++||||||||||+.++++++++++|||+|+|+||. T Consensus 1 VV~ve~A~RRIPIQYAkR~~G~k~~~gqssyLPLKIN~AG~--------------------------------------- 41 (62) T 3dl8_G 1 IVYVQEAERRIPIQYPGRQVGRQLYAGRKTYLPIKINPAGI--------------------------------------- 41 (62) T ss_dssp HTCSCCCCCCCCCBCSSSCBCCCCCCCCCCCCCCCCCCCCT--------------------------------------- T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCC--------------------------------------- T ss_conf 99998762008767566663132357875055542340016--------------------------------------- Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCC Q ss_conf 631699999999999999986237989999999963884476279 Q gi|254780241|r 315 RSFYMVLYSVFIVFFAFFYTAIVFNPKEAADNLKKHGGFIPGIRP 359 (444) Q Consensus 315 ~~~y~i~y~ilii~Fs~f~~~i~~~P~~iAe~L~k~g~~IpGiRP 359 (444) ||-|.||||.|.|+||||+|| T Consensus 42 ------------------------~~~~~~~~~~~~~~~~~~~~~ 62 (62) T 3dl8_G 42 ------------------------NPVELAENLHKAGAFIPGVRP 62 (62) T ss_dssp ------------------------HHHHHHHTCCCCBSSSBCCCC T ss_pred ------------------------CHHHHHHHHHHCCCCCCCCCC T ss_conf ------------------------889999999986986789598 No 12 >>2wwb_A Protein transport protein SEC61 subunit alpha isoform 1; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} (A:63-154) Probab=99.34 E-value=9.4e-13 Score=100.11 Aligned_cols=75 Identities=20% Similarity=0.322 Sum_probs=63.8 Q ss_pred HHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 99864277022204687354789999999999985215478641146368999998869999999999999999723556 Q gi|254780241|r 67 LFNMFSGGAVERMAVFSLGIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNG 146 (444) Q Consensus 67 ~l~~~sGga~~~~sif~LGI~PyItASIi~QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~ 146 (444) +++... |.+|+|+++|||+|++|||++||+|++. ++.+.|.+ +++|..+|..||.++++++++||.+++.+-..+ T Consensus 2 w~R~i~--As~~GTLmeLGI~PIVTasiilQlL~g~--kli~vd~~-~~dr~lfq~~QKll~~i~~~~ea~~~V~sG~~g 76 (92) T 2wwb_A 2 WMRVIL--ASNRGTLMELGISPIVTSGLIMQLLAGA--KIIEVGDT-PKDRALFNGAQKLFGMIITIGQSIVYVMTGMYG 76 (92) T ss_dssp HHHHHH--CSSCSSSCSSSSTHHHHHHHHHHHHHHH--CCCSCCSS-SSCSSCHHHHHHHHHHHHHHHHHHHHHHHTSSC T ss_pred HHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 998742--3222049997659999999999999717--11033205-365999999999999999999999999860266 No 13 >>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} (G:272-330) Probab=99.21 E-value=5.7e-12 Score=95.11 Aligned_cols=59 Identities=46% Similarity=0.922 Sum_probs=53.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC Q ss_conf 379999999998688888750777724799988753066763169999999999999998623 Q gi|254780241|r 275 VVPSIFASSLLLLPATIMGFIDVSSSPTWIVGLVDSLGHGRSFYMVLYSVFIVFFAFFYTAIV 337 (444) Q Consensus 275 vmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~y~ilii~Fs~f~~~i~ 337 (444) |||+|||||++++|.+++++.++. |..++.+.+++++|+|.++|++||++|||||+.+. T Consensus 1 ViPiIFAssil~~P~ti~~~~~~~----~~~~i~~~f~~~~~~y~~~y~~LIi~FtyFYt~iv 59 (59) T 3dl8_G 1 VIPIIFAQALLLIPSTLLNFVQNP----FIKVIADMFQPGAIFYNFLYVTFIVFFTYFYTAVL 59 (59) T ss_dssp SSHHHHHHHHHHHHHHHHHSCSSC----CCCTTTTTTTTTHHHHHHHHHHHHHHHHHHHHTCT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC T ss_conf 679999999998999999984167----89999998378983499999999999999999976 No 14 >>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} (A:1-120) Probab=80.37 E-value=1.7 Score=21.96 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=24.6 Q ss_pred HCCCHHHHHHHHHH------CCCCCCCCCCCHHHHHHHHHHH Q ss_conf 23798999999996------3884476279857999999999 Q gi|254780241|r 336 IVFNPKEAADNLKK------HGGFIPGIRPGDRTALHIDYVL 371 (444) Q Consensus 336 i~~~P~~iAe~L~k------~g~~IpGiRPG~~T~~yL~~v~ 371 (444) +.++++++.+.+.| ..+.|||+|||+.-...+++.. T Consensus 20 v~v~~~~~~~~~~k~~~~~~k~~~ipGFRkGKvP~~ii~~~~ 61 (120) T 1t11_A 20 ITVPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMY 61 (120) T ss_dssp EEECHHHHHHHHHHHHHHHHTTCCCTTSCSSCCCHHHHHHHH T ss_pred EEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH T ss_conf 998799999999999999971188899899988899999998 No 15 >>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A (A:21-109) Probab=59.22 E-value=6.7 Score=18.11 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=17.1 Q ss_pred HHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 96388447627985799999999 Q gi|254780241|r 348 KKHGGFIPGIRPGDRTALHIDYV 370 (444) Q Consensus 348 ~k~g~~IpGiRPG~~T~~yL~~v 370 (444) -+....|||+|||+.-..-+++. T Consensus 15 ~~~~~~ipGFRkGKvP~~~i~k~ 37 (89) T 2nsc_A 15 LNQRVEIPGFRKGRIPKNVLKMK 37 (89) T ss_dssp HHTTCCCTTSCTTCCCHHHHHHH T ss_pred HHHHCCCCCCCCCCCCHHHHHHH T ss_conf 98638899987998899999999 No 16 >>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7 (1:) Probab=59.19 E-value=3.2 Score=20.14 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=18.0 Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 638844762798579999999999 Q gi|254780241|r 349 KHGGFIPGIRPGDRTALHIDYVLT 372 (444) Q Consensus 349 k~g~~IpGiRPG~~T~~yL~~v~~ 372 (444) +..+.|||+|||+.-.+.+++... T Consensus 35 ~k~~kipGFRkGKvP~~ii~k~~g 58 (112) T 2d3o_1 35 ARDVRVPGFRPGKAPRKVIENRVG 58 (112) T ss_dssp HTTSCBTTBCTTCCCSTTHHHHTT T ss_pred HHHCCCCCCCCCCCCHHHHHHHHH T ss_conf 851889997798885899998856 No 17 >>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} (A:1-117) Probab=58.41 E-value=4.8 Score=19.01 Aligned_cols=33 Identities=12% Similarity=0.077 Sum_probs=20.9 Q ss_pred CCHHHHHHHH------HHCCCCCCCCCCCHHHHHHHHHH Q ss_conf 7989999999------96388447627985799999999 Q gi|254780241|r 338 FNPKEAADNL------KKHGGFIPGIRPGDRTALHIDYV 370 (444) Q Consensus 338 ~~P~~iAe~L------~k~g~~IpGiRPG~~T~~yL~~v 370 (444) ++++++.+.+ .+....|||+|||+.-...+++. T Consensus 19 v~~~~~~~~~~~~~~~~~k~~~ipGFRkGKvP~~ii~~~ 57 (117) T 1w26_A 19 IAADSIETAVKSELVNVAKKVRIDGFRKGKVPXNIVAQR 57 (117) T ss_dssp ECHHHHHHHHHHHHHHHHHHTTCGGGCCSSSCHHHHHHH T ss_pred ECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH T ss_conf 979999999999999986608779989998889999999 No 18 >>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} (A:) Probab=58.18 E-value=5.7 Score=18.54 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=22.3 Q ss_pred CCHHHHHHHHH------HCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 79899999999------638844762798579999999999 Q gi|254780241|r 338 FNPKEAADNLK------KHGGFIPGIRPGDRTALHIDYVLT 372 (444) Q Consensus 338 ~~P~~iAe~L~------k~g~~IpGiRPG~~T~~yL~~v~~ 372 (444) ++++++.+.+. +....|||+|||+.-...+++-.. T Consensus 22 v~~~~~~~~~~k~~~~~~k~~kipGFRkGKvP~~ii~~~~~ 62 (121) T 1p9y_A 22 IAADSIETAVKSELVNVAKKVRIDGLRKGKVPMNIVAQRYG 62 (121) T ss_dssp ECHHHHHHHHHHHHHHHHTTCCCTTSCTTCSCHHHHHHHHH T ss_pred ECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH T ss_conf 98999999999999999833888997889889999999985 No 19 >>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} PDB: 3gu0_A (X:1-108) Probab=52.50 E-value=8.9 Score=17.31 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=19.7 Q ss_pred CCHHHHHHHHH------HCCCCCCCCCCCHHHHHHHHH Q ss_conf 79899999999------638844762798579999999 Q gi|254780241|r 338 FNPKEAADNLK------KHGGFIPGIRPGDRTALHIDY 369 (444) Q Consensus 338 ~~P~~iAe~L~------k~g~~IpGiRPG~~T~~yL~~ 369 (444) +.++++.+.+. +..+-|||+|+|+.-...+++ T Consensus 19 v~~~e~~~~~~~~~~~~~k~~~ipGFRkGKvP~~~i~k 56 (108) T 3gty_X 19 FGAEEIAQAEDKAVRYLNQRVEIPGFRKGRIPKNVLKM 56 (108) T ss_dssp CCTTHHHHHHHHHHHHHHTSCCCCC--CCCCCSHHHHT T ss_pred ECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH T ss_conf 86999999999999998471777999999789999999 No 20 >>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} (B:) Probab=40.59 E-value=7.2 Score=17.88 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=9.3 Q ss_pred CCCHHHHHHCCCCHHH Q ss_conf 9652778751258898 Q gi|254780241|r 1 MASAVEQFVSNLNFAS 16 (444) Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (444) ||...||-+.+.+..+ T Consensus 1 ~~~~~ek~~~~~~~~~ 16 (290) T 3ixz_B 1 MAALQEKKSCSQRMEE 16 (290) T ss_pred CCHHHHHHHHHHHHHH T ss_conf 9327665668888888 No 21 >>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specificity, signaling, protein binding; NMR {Caenorhabditis elegans} (A:) Probab=34.47 E-value=26 Score=14.36 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=19.5 Q ss_pred HHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 47864114636899999886999 Q gi|254780241|r 105 SLENLKKEGEQGRKVINQYTRYA 127 (444) Q Consensus 105 ~l~~l~kege~gr~ki~~~tr~l 127 (444) -++++|++||.--.|++..+|.| T Consensus 15 LlekLq~sgevp~~KL~aLqkVL 37 (53) T 1zl8_A 15 LMEHVQKTGEVNNAKLASLQQVL 37 (53) T ss_dssp HHHHHGGGSSSTHHHHHHHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHHHH T ss_conf 99999886999869999999999 No 22 >>1y74_A LIN 7 homolog B; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} (A:) Probab=30.64 E-value=24 Score=14.58 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=19.9 Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 478641146368999998869999 Q gi|254780241|r 105 SLENLKKEGEQGRKVINQYTRYAT 128 (444) Q Consensus 105 ~l~~l~kege~gr~ki~~~tr~lt 128 (444) -++++|+.||.-..|++..+|.|- T Consensus 13 Lle~LQ~sgevp~~KL~aLqkVLq 36 (57) T 1y74_A 13 LLERLQRSGELPPQKLQALQRVLQ 36 (57) T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHHHHH T ss_conf 999998869998399999999999 No 23 >>1tvs_A Transactivator protein; transcription regulation; NMR {Equine infectious anemia virus} (A:) Probab=21.63 E-value=20 Score=15.10 Aligned_cols=23 Identities=39% Similarity=0.719 Sum_probs=19.6 Q ss_pred HHHHHHHHHHCCCCCCCCCCCHH Q ss_conf 89999999963884476279857 Q gi|254780241|r 340 PKEAADNLKKHGGFIPGIRPGDR 362 (444) Q Consensus 340 P~~iAe~L~k~g~~IpGiRPG~~ 362 (444) |...-|||+|+.+-+||.--|++ T Consensus 7 p~taeenlqkssggvpg~ntG~q 29 (75) T 1tvs_A 7 PGTAEENLQKSSGGVPGQNTGGQ 29 (75) T ss_dssp TTTHHHHTTCCCCCCCCCCCSSS T ss_pred CCCHHHHHHHCCCCCCCCCCCCC T ss_conf 86278887651699988777765 Done!