HHsearch results for GI: 254780241 and protein with PDBid: 2wwb_A
>2wwb_A Protein transport protein SEC61 subunit alpha isoform 1; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=100.00 E-value=0 Score=718.08 Aligned_cols=390 Identities=21% Similarity=0.274 Sum_probs=325.0
Q ss_pred HHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCH
Q ss_conf 75125889883587889999999999999985067989873988999987303553788998642770222046873547
Q gi|254780241|r 8 FVSNLNFASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIM 87 (444)
Q Consensus 8 ~~~~~~~~~~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~ 87 (444)
+.-+. ++..|++|||||++||++++++||+|++||+||||.++ ..+.+ .++++|||++|+|+|+|||+
T Consensus 15 ~lp~v--~~p~~~~~lr~KilfTl~~l~vyr~g~~IPlpGv~~~~--------~~~~~--~~l~~~~a~~~~SifaLGI~ 82 (476)
T 2wwb_A 15 ILPEI--QKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSD--------SADPF--YWMRVILASNRGTLMELGIS 82 (476)
T ss_dssp HSCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHSCCCSSSTTT--------CSCCC--HHHHHHHCSSCSSSCSSSST
T ss_pred HCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH--------HHHHH--HHHHHHCCHHHHHHHHHHHH
T ss_conf 48210--38787998788999999999999997368789868305--------56589--99987423222049997659
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 899999999999852-1547864114636899999886999999999999999972355676225875047999999999
Q gi|254780241|r 88 PYISASIIVQLIAAT-VPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLL 166 (444)
Q Consensus 88 PyItASIi~QLL~~~-~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~~~~~~~~~~~~~~~il~L~ 166 (444)
|||||||+||||++. +|+++|++|| |+|+|++|||+|+++|++||++++.+... +...+++..+.+.++++|+
T Consensus 83 PyItASIImQLL~~~~~~~l~~~~~~----r~k~~~~tr~lt~~la~iqa~~~~~~~~~--~~~~~~~~~~~~~~~~~L~ 156 (476)
T 2wwb_A 83 PIVTSGLIMQLLAGAKIIEVGDTPKD----RALFNGAQKLFGMIITIGQSIVYVMTGMY--GDPSEMGAGICLLITIQLF 156 (476)
T ss_dssp HHHHHHHHHHHHHHHCCCSCCSSSSC----SSCHHHHHHHHHHHHHHHHHHHHHHHTSS--CCSSCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHHHHH
T ss_conf 99999999999971711033205365----99999999999999999999999986026--6655664599999999999
Q ss_pred HHHHHHHHHHHHHHH-CCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCC-----------------------------C
Q ss_conf 999999999998740-8898752036210146576788743333200123-----------------------------2
Q gi|254780241|r 167 GGTMFLVWLGEQITM-RGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGS-----------------------------I 216 (444)
Q Consensus 167 aGs~il~wl~e~It~-~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~~~-----------------------------~ 216 (444)
+|++++||+||+||| ||+|||+||+|++||++++|++..+.......+. .
T Consensus 157 ~G~~~lmwL~E~it~~~GiGnGiSLiI~~gIv~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~ 236 (476)
T 2wwb_A 157 VAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYR 236 (476)
T ss_dssp HHHHHHHHHHHHHHTTTCSSCSHHHHHHHHHHHHHHHHHTCCSSCSCCCSCCTTTTCCCHHHHHHHTCTTSSSSSSCSSS
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999888875223535017999999999998886325023126775332107999999999887789998889999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 15899999999999999999886533232101101211664235643114442000023799999999986888887507
Q gi|254780241|r 217 STPLMLLIFSSTVAVIALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFID 296 (444)
Q Consensus 217 ~~~~~l~~~~~~l~vi~~iV~v~~~~rrIPi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~ 296 (444)
.....+..+..+++++..++++|+++||||+||+| ++++++|+|+|+|+|||||+||||+++++|.++++++.
T Consensus 237 ~~l~~~~~l~~~~~i~~~vv~~~~~~~rIPv~~~~-------~~g~~s~lPiKln~aGviPiIFasall~~p~~i~~~~~ 309 (476)
T 2wwb_A 237 QNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSAR-------YRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLS 309 (476)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHCCBCCCCCBCS-------SSSBCSCCCBCTTTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCC-------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999988997643321036774144333-------46876666743343232109999999987999999972
Q ss_pred CCCCHHH-H--------------------HHHHHHCCCC------------CCHHHHHHHHHHHHHHHHHHHHC-CCHHH
Q ss_conf 7772479-9--------------------9887530667------------63169999999999999998623-79899
Q gi|254780241|r 297 VSSSPTW-I--------------------VGLVDSLGHG------------RSFYMVLYSVFIVFFAFFYTAIV-FNPKE 342 (444)
Q Consensus 297 ~~~~~~~-~--------------------~~~~~~~~~~------------~~~y~i~y~ilii~Fs~f~~~i~-~~P~~ 342 (444)
.....++ . .++.++++|. .++|.++|++++++|+|||+.++ +||||
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~yl~p~~~~~~~~~~p~~~~~Y~~~~~~l~i~Fs~fy~~i~~~nP~~ 389 (476)
T 2wwb_A 310 ARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKD 389 (476)
T ss_dssp HHTSCCSCHHHHCSSSTTCSCTTSSSCCSSSHHHHTSCCSSSSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 13753057787665520023565556610045655168634888875430369999999999999999999960899999
Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999963884476279857999999999999999999999999999999998488410025799999999999999999
Q gi|254780241|r 343 AADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQIQ 422 (444)
Q Consensus 343 iAe~L~k~g~~IpGiRPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~~~~~gGTslLI~Vgv~l~~~~qi~ 422 (444)
+||||||+|++|||+||| +|++||+|+++|+|++||+|++++|++|++++.. +||||+||+|||++||++|++
T Consensus 390 iAenlkk~g~~IPGiRpg-~t~~yL~~vi~rit~~Gai~L~~iAvlp~~l~~~------~gGTslLI~VgV~l~~~~qi~ 462 (476)
T 2wwb_A 390 VAKQLKEQQMVMRGHRET-SMVHELNRYIPTAAAFGGLCIGALSVLADFLGAI------GSGTGILLAVTIIYQYFEIFV 462 (476)
T ss_dssp HHHHHHHHCTTTCCCCTT-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS------SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999869927898997-2499999999999999999999999999999870------447879999999999999999
Q ss_pred HHHHHHH
Q ss_conf 9999985
Q gi|254780241|r 423 GYLIAQQ 429 (444)
Q Consensus 423 a~~~~~~ 429 (444)
.+.....
T Consensus 463 ~e~~~~~ 469 (476)
T 2wwb_A 463 KEQSEVG 469 (476)
T ss_dssp HHHTCCS
T ss_pred HHHHHCC
T ss_conf 9986567