HHsearch results for GI: 254780241 and protein with PDBid: 2zjs_Y
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, protein transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y
Probab=100.00 E-value=0 Score=831.27 Aligned_cols=425 Identities=37% Similarity=0.721 Sum_probs=397.8
Q ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHH
Q ss_conf 88988358788999999999999998506798987398899998730355378899864277022204687354789999
Q gi|254780241|r 13 NFASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYISA 92 (444)
Q Consensus 13 ~~~~~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyItA 92 (444)
.|+|+||+||||||++||++++++||+|++||+||+|++++++.++++++++++++++++|||++|+|+|+|||+|||||
T Consensus 4 ~~~~~~~~~~L~~kl~~Tl~iL~iy~ig~~IPlpGi~~~~~~~~~~~~~~~~~~~~~~~sGga~~~~Slf~LGI~P~ItA 83 (434)
T 2zjs_Y 4 AFWSALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEFLRTAQGGVFGIINLFSGGNFERFSIFALGIMPYITA 83 (434)
T ss_dssp HHHHHHSSHHHHHHHHHHHHHHHHHHHHTTCBCTTBCHHHHHHHHHSSGGGTTHHHHHHTTSCGGGTBTTSSTTHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHCCHHHHCHHHHHHH
T ss_conf 89999737889999999999999999971489998699999999873654088999997254352051999567999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-----CCCCCCCHHHHHHHHHHHH
Q ss_conf 99999998521547864114636899999886999999999999999972355676-----2258750479999999999
Q gi|254780241|r 93 SIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQG-----IVSDSDYFFVFSTIITLLG 167 (444)
Q Consensus 93 SIi~QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~~-----~~~~~~~~~~~~~il~L~a 167 (444)
||+||||++..|.++||+||||+||+|++++||++|+++|++||++++..+.+..+ ...+++..+.+.++++|++
T Consensus 84 sIi~QLL~~~~p~~~~l~k~g~~g~~k~~~~tr~ltl~~a~iqa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~ 163 (434)
T 2zjs_Y 84 AIIMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVA 163 (434)
T ss_dssp HHHHHHHHHHSHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99999999856428762334476899999999999999999999999999853578743521468037899999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998740889875203621014657678874333320012321589999999999999999988653323210
Q gi|254780241|r 168 GTMFLVWLGEQITMRGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGSISTPLMLLIFSSTVAVIALVIFFERAQRRLLI 247 (444)
Q Consensus 168 Gs~il~wl~e~It~~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~~~~~~~~~l~~~~~~l~vi~~iV~v~~~~rrIPi 247 (444)
|+++++|+||+|||||+|||+|++|++||++++|+++.+.+.....+..............+++++++|++++++||||+
T Consensus 164 Gs~~l~wl~e~it~~GiGnG~SliI~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ipi 243 (434)
T 2zjs_Y 164 GIALLLWMAERITEYGIGNGTSLIIFAGIVVEWLPQILRTIGLIRTGEVNLVAFLFFLAFIVLAFAGMAAVQQAERRIPV 243 (434)
T ss_dssp HHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHTHHHHHHHHHHTTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCC
T ss_conf 99999999877764403788305656778762647765577641256237999999999999999999997741320000
Q ss_pred CCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 11012116642356431144420000237999999999868888875077772479998875306676316999999999
Q gi|254780241|r 248 QYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSSPTWIVGLVDSLGHGRSFYMVLYSVFIV 327 (444)
Q Consensus 248 ~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~y~ilii 327 (444)
+|+++.++++.++++++|+|+|+|||||||+||||+++++|.+++++.... .+..+.....+++.|+|.++|.++++
T Consensus 244 ~~~~~~~~~~~~~~~~s~iPikln~agvmPiIfassll~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~y~~lii 320 (434)
T 2zjs_Y 244 QYARKVVGGRVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPFQDN---PVLQGIANFFNPTRPSGLFIEVLLVI 320 (434)
T ss_dssp EECC-------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHTTCTTC---HHHHHHHHHHCSSSHHHHHHHHHHHH
T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 112342355435787630223101555479999999874278887651145---78999999717888659999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHH
Q ss_conf 999999862379899999999638844762798579999999999999999999999999999999984884-1002579
Q gi|254780241|r 328 FFAFFYTAIVFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVP-VSLSGTS 406 (444)
Q Consensus 328 ~Fs~f~~~i~~~P~~iAe~L~k~g~~IpGiRPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~~-~~~gGTs 406 (444)
+|+|||+.+++||||+||||+|+|++|||+||||+|+|||+|+++|+|++||+|++++|++|++++...+.+ .++||||
T Consensus 321 ff~~~~~~~~~~pk~iAe~L~k~g~~IpGiRpG~~T~~yL~~~i~~~t~~G~~~l~~la~~p~i~~~~~~~~~~~~~GTs 400 (434)
T 2zjs_Y 321 LFTYVYTAVQFDPKRIAESLREYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLLPQIIQNLTGIHSIAFSGIG 400 (434)
T ss_dssp HHHHHHHHCSSCHHHHHHHTTTTTEECTTBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCGGGSSHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 99999999627879999999987987678289877899999999999999999999999999999998377766763687
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999999999999998526564311016
Q gi|254780241|r 407 LLIIVSVVLDTIVQIQGYLIAQQYEGVFKKSRSK 440 (444)
Q Consensus 407 lLI~Vgv~l~~~~qi~a~~~~~~Y~~~~~~~~~~ 440 (444)
+||+|||++||+||+|+++.|++||+++||+|.|
T Consensus 401 lLI~Vgii~~~~~qi~a~~~~~~Y~~~~~~~~~~ 434 (434)
T 2zjs_Y 401 LLIVVGVALDTLRQVESQLMLRSYEGFLSRGRLR 434 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8969999999999999999998708887324689