Query gi|254780241|ref|YP_003064654.1| preprotein translocase subunit SecY [Candidatus Liberibacter asiaticus str. psy62] Match_columns 444 No_of_seqs 128 out of 1544 Neff 6.2 Searched_HMMs 23785 Date Tue May 24 01:18:11 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780241.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3din_C Preprotein translocase 100.0 0 0 868.2 18.6 421 12-443 3-431 (431) 2 2zjs_Y Preprotein translocase 100.0 0 0 831.3 44.7 425 13-440 4-434 (434) 3 3dl8_G Preprotein translocase 100.0 0 0 843.1 17.4 421 12-436 3-429 (429) 4 2akh_Y Preprotein translocase 100.0 0 0 757.5 41.0 387 15-437 11-400 (400) 5 1rh5_A Preprotein translocase 100.0 0 0 738.7 26.9 390 17-437 17-434 (436) 6 3mp7_A Preprotein translocase 100.0 0 0 744.8 12.9 396 15-438 18-467 (482) 7 2wwb_A Protein transport prote 100.0 0 0 718.1 23.1 390 8-429 15-469 (476) 8 2ww9_A SEC sixty-one protein h 100.0 0 0 678.7 20.8 388 17-432 23-479 (490) 9 1p9y_A Trigger factor, TF; alp 85.4 0.42 1.8E-05 24.8 2.6 36 337-372 21-62 (121) 10 2nsc_A Trigger factor, TF; cha 81.2 0.88 3.7E-05 22.7 2.8 37 336-372 17-59 (109) 11 1t11_A Trigger factor, TF; hel 78.1 1.5 6.4E-05 21.2 3.2 11 39-49 38-48 (392) 12 1w26_A Trigger factor, TF; cha 67.0 2 8.5E-05 20.4 1.7 16 336-351 360-375 (432) 13 2d3o_1 Trigger factor, TF; rib 66.5 0.89 3.7E-05 22.7 -0.2 21 350-370 36-56 (112) 14 3gty_X Trigger factor, TF; cha 62.4 1.8 7.4E-05 20.8 0.7 12 38-49 34-45 (433) 15 3ixz_B Potassium-transporting 37.5 5.1 0.00022 17.9 -0.2 14 1-14 1-14 (290) 16 1zl8_A LIN-7; heterodimer, alp 33.9 18 0.00078 14.3 2.3 23 105-127 15-37 (53) No 1 >3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP- binding, cytoplasm, inner membrane, nucleotide-binding; HET: ADP; 4.50A {Thermotoga maritima MSB8} Probab=100.00 E-value=0 Score=868.25 Aligned_cols=421 Identities=37% Similarity=0.745 Sum_probs=385.5 Q ss_pred CCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH-----CCCCHHHHHHHHCCCCHHHHHHHHHCC Q ss_conf 588988358788999999999999998506798987398899998730-----355378899864277022204687354 Q gi|254780241|r 12 LNFASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQS-----KSAGIFGLFNMFSGGAVERMAVFSLGI 86 (444) Q Consensus 12 ~~~~~~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~-----~~~~~~~~l~~~sGga~~~~sif~LGI 86 (444) .+|+|+||+||||||++||+++|++||+|++||+||+|++++.+.+++ +++++++++|+|+|||++|+|+|+||| T Consensus 3 ~~~~~~~k~~eLr~ri~~Tl~iL~iyr~g~~IPlpGid~~~~~~~~~~~~~~~~~~~ll~~~~~fsGGa~~~~Sif~LGI 82 (431) T 3din_C 3 QAFKNAFKIPELRDRIIFTFLALIVFRMGIYIPVPGLNLEAWGEIFRRIAETAGVAGILSFYDVFTGGALSRFSVFTMSV 82 (431) T ss_dssp -----CCSCSCCSSHHHHHHHHHHHHHHHHSCSSCCCCC--------------------CTTHHHHCSSSSCCCSSSSSH T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHCHHHHHCH T ss_conf 88999976788999999999999999973348999869899999999865124420288999986033341050988455 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHH Q ss_conf 78999999999998521547864114636899999886999999999999999972355676---225875047999999 Q gi|254780241|r 87 MPYISASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQG---IVSDSDYFFVFSTII 163 (444) Q Consensus 87 ~PyItASIi~QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~~---~~~~~~~~~~~~~il 163 (444) +|||||||+||||++.+|.++|+|||||+||||++++||++|+++|++||++++.++.+... ...++...+.+.+++ T Consensus 83 ~PyItAsII~QLL~~~~p~l~~~~~ege~gr~k~~~~tr~lti~la~iqs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (431) T 3din_C 83 TPYITASIILQLLASVMPSLKEMLREGEEGRKKFAKYTRRLTLLIGGFQAFFVSFSLARSNPDMVAPGVNVLQFTVLSTM 162 (431) T ss_dssp HHHHHHHHHHHHHHHHSCSSSSCSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCCSSHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH T ss_conf 89999999999999755508874000265689999999999999999999999999861688512678615899999999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999874088987520362101465767887433332001232158999999999999999998865332 Q gi|254780241|r 164 TLLGGTMFLVWLGEQITMRGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGSISTPLMLLIFSSTVAVIALVIFFERAQR 243 (444) Q Consensus 164 ~L~aGs~il~wl~e~It~~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~~~~~~~~~l~~~~~~l~vi~~iV~v~~~~r 243 (444) +|++||+++||+||+|||||+|||+|++|++||++++|+.+.+.+. +..........+...++++.++|++++++| T Consensus 163 ~L~~Gt~~l~Wl~e~it~~GiGnGiSliI~~gI~~~lp~~~~~~~~----~~~~~~~~~~~~~~~l~~i~~~V~v~~~~r 238 (431) T 3din_C 163 SMLAGTMFLLWLGERITEKGIGNGISILIFAGIVARYPSYIRQAYL----GGLNLLEWIFLIAVALITIFGIILVQQAER 238 (431) T ss_dssp HHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHHSTTSSSCCSS----CCSCTHHHHHHHHHHHHHHHHHTTTCCBCC T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHEE T ss_conf 9999999999998787664317784034357676543599986431----000179999999999999999998764104 Q ss_pred HHHHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHH Q ss_conf 32101101211664235643114442000023799999999986888887507777247999887530667631699999 Q gi|254780241|r 244 RLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSSPTWIVGLVDSLGHGRSFYMVLYS 323 (444) Q Consensus 244 rIPi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~y~ 323 (444) |||+||+++.++++.++++++|+|+|+|||||||+||||+++++|++++++++.... .+.++++.++|.++|+ T Consensus 239 ripi~~~~~~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~~~~-------~~~~~~~~~~y~~~~~ 311 (431) T 3din_C 239 RITIQYARRVTGRRVYGGASTYLPIKVNQGGVIPIIFASAIVSIPSAIASITNNETL-------KNLFRAGGFLYLLIYG 311 (431) T ss_dssp CCCCCBTTTBCCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHTTSSTTCCC-------CCCSSTTHHHHHHHHH T ss_pred EEEEEEHHHHCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHCCCCC-------CCCCCCCCCHHHHHHH T ss_conf 898775233325554588775054223142237999999999889999987166332-------3303688735599999 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH Q ss_conf 99999999998623798999999996388447627985799999999999999999999999999999999848841002 Q gi|254780241|r 324 VFIVFFAFFYTAIVFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLS 403 (444) Q Consensus 324 ilii~Fs~f~~~i~~~P~~iAe~L~k~g~~IpGiRPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~~~~~g 403 (444) +++++|+|||+.+++||||+||||+|+|++|||+||||+|++||+|+++|+|++||+|++++|++|++++...+.+..+| T Consensus 312 ~lii~fs~f~~~i~~~p~~iAe~L~k~G~~IpGiRpG~~T~~yL~~~i~rlt~~Gsi~l~~ia~lp~l~~~~~~~~~~~g 391 (431) T 3din_C 312 LLVFFFTYFYSVVIFDPREISENIRKYGGYIPGLRPGRSTEQYLHRVLNRVTFIGAVFLVVIALLPYLVQGAIKVNVWIG 391 (431) T ss_dssp HHHHHHHHHHHTCTTHHHHHTTSCCCCBCSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSCCTT T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 99999999999976688999999998698657939986789999999999999989999999999999998548872444 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 5799999999999999999999998526564311016777 Q gi|254780241|r 404 GTSLLIIVSVVLDTIVQIQGYLIAQQYEGVFKKSRSKKKN 443 (444) Q Consensus 404 GTslLI~Vgv~l~~~~qi~a~~~~~~Y~~~~~~~~~~~~~ 443 (444) |||+||+|||++||+||+|||+.|||||+++||+|.|+|. T Consensus 392 GTslLI~VgV~~~~~~qi~~~~~~~~Y~~~l~~~~~~~r~ 431 (431) T 3din_C 392 GTSALIAVGVALDIIQQMETHMVMRHYEGFIKKGKIRGRR 431 (431) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCSSTTCC-------- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 5778747999999999999999999878887535666799 No 2 >2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, protein transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y Probab=100.00 E-value=0 Score=831.27 Aligned_cols=425 Identities=37% Similarity=0.721 Sum_probs=397.8 Q ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHH Q ss_conf 88988358788999999999999998506798987398899998730355378899864277022204687354789999 Q gi|254780241|r 13 NFASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYISA 92 (444) Q Consensus 13 ~~~~~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyItA 92 (444) .|+|+||+||||||++||++++++||+|++||+||+|++++++.++++++++++++++++|||++|+|+|+|||+||||| T Consensus 4 ~~~~~~~~~~L~~kl~~Tl~iL~iy~ig~~IPlpGi~~~~~~~~~~~~~~~~~~~~~~~sGga~~~~Slf~LGI~P~ItA 83 (434) T 2zjs_Y 4 AFWSALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEFLRTAQGGVFGIINLFSGGNFERFSIFALGIMPYITA 83 (434) T ss_dssp HHHHHHSSHHHHHHHHHHHHHHHHHHHHTTCBCTTBCHHHHHHHHHSSGGGTTHHHHHHTTSCGGGTBTTSSTTHHHHHH T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHCCHHHHCHHHHHHH T ss_conf 89999737889999999999999999971489998699999999873654088999997254352051999567999999 Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-----CCCCCCCHHHHHHHHHHHH Q ss_conf 99999998521547864114636899999886999999999999999972355676-----2258750479999999999 Q gi|254780241|r 93 SIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQG-----IVSDSDYFFVFSTIITLLG 167 (444) Q Consensus 93 SIi~QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~~-----~~~~~~~~~~~~~il~L~a 167 (444) ||+||||++..|.++||+||||+||+|++++||++|+++|++||++++..+.+..+ ...+++..+.+.++++|++ T Consensus 84 sIi~QLL~~~~p~~~~l~k~g~~g~~k~~~~tr~ltl~~a~iqa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~ 163 (434) T 2zjs_Y 84 AIIMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVA 163 (434) T ss_dssp HHHHHHHHHHSHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHH T ss_conf 99999999856428762334476899999999999999999999999999853578743521468037899999999999 Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999998740889875203621014657678874333320012321589999999999999999988653323210 Q gi|254780241|r 168 GTMFLVWLGEQITMRGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGSISTPLMLLIFSSTVAVIALVIFFERAQRRLLI 247 (444) Q Consensus 168 Gs~il~wl~e~It~~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~~~~~~~~~l~~~~~~l~vi~~iV~v~~~~rrIPi 247 (444) |+++++|+||+|||||+|||+|++|++||++++|+++.+.+.....+..............+++++++|++++++||||+ T Consensus 164 Gs~~l~wl~e~it~~GiGnG~SliI~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ipi 243 (434) T 2zjs_Y 164 GIALLLWMAERITEYGIGNGTSLIIFAGIVVEWLPQILRTIGLIRTGEVNLVAFLFFLAFIVLAFAGMAAVQQAERRIPV 243 (434) T ss_dssp HHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHTHHHHHHHHHHTTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCC T ss_conf 99999999877764403788305656778762647765577641256237999999999999999999997741320000 Q ss_pred CCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH Q ss_conf 11012116642356431144420000237999999999868888875077772479998875306676316999999999 Q gi|254780241|r 248 QYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSSPTWIVGLVDSLGHGRSFYMVLYSVFIV 327 (444) Q Consensus 248 ~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~y~ilii 327 (444) +|+++.++++.++++++|+|+|+|||||||+||||+++++|.+++++.... .+..+.....+++.|+|.++|.++++ T Consensus 244 ~~~~~~~~~~~~~~~~s~iPikln~agvmPiIfassll~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~y~~lii 320 (434) T 2zjs_Y 244 QYARKVVGGRVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPFQDN---PVLQGIANFFNPTRPSGLFIEVLLVI 320 (434) T ss_dssp EECC-------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHTTCTTC---HHHHHHHHHHCSSSHHHHHHHHHHHH T ss_pred CHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 112342355435787630223101555479999999874278887651145---78999999717888659999999999 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHH Q ss_conf 999999862379899999999638844762798579999999999999999999999999999999984884-1002579 Q gi|254780241|r 328 FFAFFYTAIVFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVP-VSLSGTS 406 (444) Q Consensus 328 ~Fs~f~~~i~~~P~~iAe~L~k~g~~IpGiRPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~~-~~~gGTs 406 (444) +|+|||+.+++||||+||||+|+|++|||+||||+|+|||+|+++|+|++||+|++++|++|++++...+.+ .++|||| T Consensus 321 ff~~~~~~~~~~pk~iAe~L~k~g~~IpGiRpG~~T~~yL~~~i~~~t~~G~~~l~~la~~p~i~~~~~~~~~~~~~GTs 400 (434) T 2zjs_Y 321 LFTYVYTAVQFDPKRIAESLREYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLLPQIIQNLTGIHSIAFSGIG 400 (434) T ss_dssp HHHHHHHHCSSCHHHHHHHTTTTTEECTTBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCGGGSSHH T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH T ss_conf 99999999627879999999987987678289877899999999999999999999999999999998377766763687 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999999999999999998526564311016 Q gi|254780241|r 407 LLIIVSVVLDTIVQIQGYLIAQQYEGVFKKSRSK 440 (444) Q Consensus 407 lLI~Vgv~l~~~~qi~a~~~~~~Y~~~~~~~~~~ 440 (444) +||+|||++||+||+|+++.|++||+++||+|.| T Consensus 401 lLI~Vgii~~~~~qi~a~~~~~~Y~~~~~~~~~~ 434 (434) T 2zjs_Y 401 LLIVVGVALDTLRQVESQLMLRSYEGFLSRGRLR 434 (434) T ss_dssp HHHHHHHHHHHHHHHHHHHHHC------------ T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 8969999999999999999998708887324689 No 3 >3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Probab=100.00 E-value=0 Score=843.13 Aligned_cols=421 Identities=40% Similarity=0.789 Sum_probs=395.9 Q ss_pred CCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHH Q ss_conf 58898835878899999999999999850679898739889999873035537889986427702220468735478999 Q gi|254780241|r 12 LNFASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYIS 91 (444) Q Consensus 12 ~~~~~~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyIt 91 (444) +..+|+||+||||||++||++++++||+|++||+||||++++++.+++.++++++++|+|+|||++|+|+|+|||+|||| T Consensus 3 ~~l~~~~~~~~L~~rll~Tl~iL~iy~lg~~IPlpGi~~~~~~~~~~~~~~~~~~~l~~~~Gg~~~~~Slf~LGI~P~It 82 (429) T 3dl8_G 3 EYLKALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEALRDFLKAFEGSVFALYDIFSGGNLGRLTVFALGVMPYIS 82 (429) T ss_dssp -----CCSCCCCHHHHHHHHHHHHHHHHHHHCSSCCCC---------------CCSSSSSSCCSSSCCCSSSSSHHHHHH T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCHHHCCHHHHCCHHHHH T ss_conf 78998867699999999999999999986238999859999999987435648999999714216303288717588999 Q ss_pred HHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----CCCCCCCCCHHHHHHHHHH Q ss_conf 99999999852154786411-46368999998869999999999999999723556-----7622587504799999999 Q gi|254780241|r 92 ASIIVQLIAATVPSLENLKK-EGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNG-----QGIVSDSDYFFVFSTIITL 165 (444) Q Consensus 92 ASIi~QLL~~~~P~l~~l~k-ege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~-----~~~~~~~~~~~~~~~il~L 165 (444) |||+||||++..|.++|++| |||+||||++++||++|+++|++||++++.++... ...+.+++..+.+.++++| T Consensus 83 AsIi~QLL~~~~~~~~~l~~~eg~~g~~ki~~~tr~lt~~~a~iqs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~L 162 (429) T 3dl8_G 83 ASIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTL 162 (429) T ss_dssp HHHHHHHHHHHSSCSSSCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCCSSSTTTTHHHHHHHHH T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHH T ss_conf 99999999716200666322437889999999999999999999999999997403566554123175099999999999 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999987408898752036210146576788743333200123215899999999999999999886533232 Q gi|254780241|r 166 LGGTMFLVWLGEQITMRGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGSISTPLMLLIFSSTVAVIALVIFFERAQRRL 245 (444) Q Consensus 166 ~aGs~il~wl~e~It~~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~~~~~~~~~l~~~~~~l~vi~~iV~v~~~~rrI 245 (444) ++|++++||+||+|||||+|||+|++|++||++++|+.+.+.+.....+.......+..+..++++++++||+|++|||| T Consensus 163 ~~Gs~~l~wl~e~it~~GIGnGiSliI~~gI~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vi~~vv~~~~~~~~I 242 (429) T 3dl8_G 163 VAGTMFLVWIADRITEKGIGNGASLIIFAGIVANFPNAVIQFYEKVKTGDIGPLTLLLIIALIIAIIVGIVYVQEAERRI 242 (429) T ss_dssp HHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHTTTTSSCCCCSSSCSSSCTHHHHHHHHHHHHHHHHHTCSCCCCCCC T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999998874347883157550222058166642132113675315799999999999999999997664476 Q ss_pred HHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHH Q ss_conf 10110121166423564311444200002379999999998688888750777724799988753066763169999999 Q gi|254780241|r 246 LIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSSPTWIVGLVDSLGHGRSFYMVLYSVF 325 (444) Q Consensus 246 Pi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~y~il 325 (444) |+||+|++++++.++++++|+|+|+||+||||+||||+++++|+++++++.+.. ..++.+.+.++.++|..+|+++ T Consensus 243 pi~~~~~~~~~~~~~g~~~yiPiKln~agvmPiIfasall~~p~~i~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~l 318 (429) T 3dl8_G 243 PIQYPGRQVGRQLYAGRKTYLPIKINPAGVIPIIFAQALLLIPSTLLNFVQNPF----IKVIADMFQPGAIFYNFLYVTF 318 (429) T ss_dssp CCBCSSSCBCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHHHSCSSCC----CCTTTTTTTTTHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCCCHHHHHHHHHH T ss_conf 553255541443457874054320221304699999999989999999851578----9999999578865999999999 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH Q ss_conf 99999999862379899999999638844762798579999999999999999999999999999999984884100257 Q gi|254780241|r 326 IVFFAFFYTAIVFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGT 405 (444) Q Consensus 326 ii~Fs~f~~~i~~~P~~iAe~L~k~g~~IpGiRPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~~~~~gGT 405 (444) +++|+|||+.+++||||+||||+|+|++|||+||||+|+|||+|+++|+|++||+|++++|++|++++..++.+..+||| T Consensus 319 iiff~~~~~~~~~~p~~iA~~L~k~g~~IpGiRpG~~T~~yL~~~i~~~t~~G~i~l~~ia~~p~l~~~~~~~~~~~gGT 398 (429) T 3dl8_G 319 IVFFTYFYTAVLINPVELAENLHKAGAFIPGVRPGQDTVKYLERIINRLIFFGALFLSVIALIPILISVWFNIPFYFGGT 398 (429) T ss_dssp HHHHHHHHHTCTTHHHHHHHTCCCCBSSSBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCSCCCSTH T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH T ss_conf 99999999996458899999999869867884998667999999999999999999999999999999970867533278 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999852656431 Q gi|254780241|r 406 SLLIIVSVVLDTIVQIQGYLIAQQYEGVFKK 436 (444) Q Consensus 406 slLI~Vgv~l~~~~qi~a~~~~~~Y~~~~~~ 436 (444) |+||+|||++|++||+|+|+.+++||+++|| T Consensus 399 slLI~Vgv~~~~~~qi~s~~~~~~Y~~~l~k 429 (429) T 3dl8_G 399 TALIVVGVALDTFRQIETYLIQKKYKSYVRR 429 (429) T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCTTCSCC- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 8998899999999999999999862686378 No 4 >2akh_Y Preprotein translocase SECY subunit; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_Y Probab=100.00 E-value=0 Score=757.50 Aligned_cols=387 Identities=50% Similarity=0.890 Sum_probs=365.1 Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHH Q ss_conf 98835878899999999999999850679898739889999873035537889986427702220468735478999999 Q gi|254780241|r 15 ASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYISASI 94 (444) Q Consensus 15 ~~~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyItASI 94 (444) +...+.+|+|||++||++++.+||+|+++ |+|+|||+||||||| T Consensus 11 ~~~~~~~~l~~ri~ftl~~l~~~~~Gs~i------------------------------------SifsLGI~PyItAsI 54 (400) T 2akh_Y 11 SAKGGLGELKRRLLFVIGALIVFRIGSFI------------------------------------SIFALGIMPYISASI 54 (400) T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------HHHHHHHHHHHHHHH T ss_conf 88450899999999999999999966699------------------------------------999965499999999 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 9999985215478641146368999998869999999999999999723556---7622587504799999999999999 Q gi|254780241|r 95 IVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNG---QGIVSDSDYFFVFSTIITLLGGTMF 171 (444) Q Consensus 95 i~QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~---~~~~~~~~~~~~~~~il~L~aGs~i 171 (444) +||||+...|+++|||||||+||||++++||++|+++|++||++++.++.+. .+...+++..+.+.++++|++||++ T Consensus 55 i~QLL~~~~p~l~~l~k~g~~gr~k~~~~tr~ltl~~a~iQs~~~~~~l~~~~~~~~~~~~~~~~~~~~~vl~L~~Gt~i 134 (400) T 2akh_Y 55 IIQLLTVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMF 134 (400) T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHH T ss_conf 99999987776999875167779999999999999999999999999742256645313076189999999999999999 Q ss_pred HHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 99999987408898752036210146576788743333200123215899999999999999999886533232101101 Q gi|254780241|r 172 LVWLGEQITMRGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGSISTPLMLLIFSSTVAVIALVIFFERAQRRLLIQYPK 251 (444) Q Consensus 172 l~wl~e~It~~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~~~~~~~~~l~~~~~~l~vi~~iV~v~~~~rrIPi~y~~ 251 (444) +||+||+|||||+|||+||+|++||++++|+.+.+.+.....+.......++.+..+++++.++|++|+++||||++|++ T Consensus 135 l~wL~e~it~~GIGnGiSLiI~~gI~s~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~iV~~~~~~r~Ipi~~~~ 214 (400) T 2akh_Y 135 LMWLGEQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFLVLLLVAVLVFAVTFFVVFVERGQRRIVVNYAK 214 (400) T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEHH T ss_conf 99998898650758872468789887564699999887621575369999999999999999875011006888510011 Q ss_pred HHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH Q ss_conf 21166423564311444200002379999999998688888750777724799988753066763169999999999999 Q gi|254780241|r 252 RQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSSPTWIVGLVDSLGHGRSFYMVLYSVFIVFFAF 331 (444) Q Consensus 252 ~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~y~i~y~ilii~Fs~ 331 (444) +..+++.++++++|+|+|+|||||||+||||+++++|++++++++......|..++..+++++.++|.++|++++++|+| T Consensus 215 ~~~~~~~~~~~~~ylPikln~aGvmPiifassll~~p~~i~~~l~~~~~~~~~~~~~~~~~~~~~~y~~~y~~lii~f~~ 294 (400) T 2akh_Y 215 RQQGRRVYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGGTGWNWLTTISLYLQPGQPLYVLLYASAIIFFCF 294 (400) T ss_pred HHCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH T ss_conf 32256655656530113300566359999999999999999971766425799999987089980999999999999999 Q ss_pred HHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH Q ss_conf 99862379899999999638844762798579999999999999999999999999999999984884100257999999 Q gi|254780241|r 332 FYTAIVFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIV 411 (444) Q Consensus 332 f~~~i~~~P~~iAe~L~k~g~~IpGiRPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~~~~~gGTslLI~V 411 (444) ||+.+++||||+||||+|+|++|||+||||+|+|||+|+++|+|++||+|++++|++|++++..++.+..+||||+||+| T Consensus 295 f~~~i~~np~~iAe~L~k~g~~IpGiRpG~~T~~yL~~~i~~lt~~Gs~~l~~la~lp~~~~~~~~~~~~~gGTsiLI~V 374 (400) T 2akh_Y 295 FYTALVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLVGALYITFICLIPEFMRDAMKVPFYFGGTSLLIVV 374 (400) T ss_pred HHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH T ss_conf 99999468999999999879841797998668999999999999999999999999999999960887015078789889 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999999999999998526564311 Q gi|254780241|r 412 SVVLDTIVQIQGYLIAQQYEGVFKKS 437 (444) Q Consensus 412 gv~l~~~~qi~a~~~~~~Y~~~~~~~ 437 (444) ||++|++||+||++.+++||+++||. T Consensus 375 gv~~~~~~qi~a~~~~~~Y~~~l~k~ 400 (400) T 2akh_Y 375 VVIMDFMAQVQTLMMSSQYESALKKA 400 (400) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99999999999999899888884469 No 5 >1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A Probab=100.00 E-value=0 Score=738.74 Aligned_cols=390 Identities=18% Similarity=0.274 Sum_probs=332.3 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHH Q ss_conf 83587889999999999999985067989873988999987303553788998642770222046873547899999999 Q gi|254780241|r 17 FSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYISASIIV 96 (444) Q Consensus 17 ~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyItASIi~ 96 (444) -.|++++|||++||++++++||+|++||+||+| .+..+.++++++++|++ ++|+|+|||+|||||||+| T Consensus 17 p~~~~~lr~kil~T~~~l~iy~~gs~IPlpgi~---------~~~~~~~~~~~~~~~~~--~~SlfaLGI~PyItASII~ 85 (436) T 1rh5_A 17 PVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAG---------AQIPAIFEFWQTITASR--IGTLITLGIGPIVTAGIIM 85 (436) T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHHTTSBCCCSS---------CCCCSCCTTHHHHHTCC--TTBTTTTTTHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC---------CCCCCHHHHHHHHHCCC--CCHHHHHCHHHHHHHHHHH T ss_conf 888897887999999999999983368758889---------88653789999872431--0429997729999999999 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99985215478641146368999998869999999999999999723556762258750479999999999999999999 Q gi|254780241|r 97 QLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVWLG 176 (444) Q Consensus 97 QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~~~~~~~~~~~~~~~il~L~aGs~il~wl~ 176 (444) |||+. |+++++|||||+||+|++++|||+|+++|++||++++.... ..+.+....+.++++|++||+++||+| T Consensus 86 QLL~~--~~l~~~~~~~~~gr~~~~~~tr~lti~~a~iqa~~~~~~~~-----~~~~~~~~~~lii~~L~aGs~ilmwL~ 158 (436) T 1rh5_A 86 QLLVG--SGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGA-----FGILTPLLAFLVIIQIAFGSIILIYLD 158 (436) T ss_dssp HHHHH--HTTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-----SCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHH--CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99973--52767630267589999999999999999999999996221-----578861899999999999999999999 Q ss_pred HHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHH------HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 9874088987520362101465767887433332------0012321589999999999999999988653323210110 Q gi|254780241|r 177 EQITMRGIGNGVSLIIFSGIVAGLPSSLVSVLEL------GRVGSISTPLMLLIFSSTVAVIALVIFFERAQRRLLIQYP 250 (444) Q Consensus 177 e~It~~GIGnG~SLiI~~gIi~~lp~~l~~~~~~------~~~~~~~~~~~l~~~~~~l~vi~~iV~v~~~~rrIPi~y~ 250 (444) |+|||||+|||+|++|++||++++|+...+.... ...........++.++.++++++++||+|+++||||+||+ T Consensus 159 E~It~~GiGnGiSLiI~~gI~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~i~i~~~vv~~~~~~~~IPi~~~ 238 (436) T 1rh5_A 159 EIVSKYGIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHG 238 (436) T ss_dssp HHHHHHSSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHTTTTCCCGGGTHHHHHHHHHHHHHHHHTTCEEEEECCCS T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 99850285645289999999999887501504699999988740332188999999999999999998787422233343 Q ss_pred HHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCC--------CCCHHHHHHHHHHCCC--------- Q ss_conf 12116642356431144420000237999999999868888875077--------7724799988753066--------- Q gi|254780241|r 251 KRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDV--------SSSPTWIVGLVDSLGH--------- 313 (444) Q Consensus 251 ~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~--------~~~~~~~~~~~~~~~~--------- 313 (444) |+ +++++|+|+|+|+|||||+|||++++++|.++.+++.+ .....+..++..++++ T Consensus 239 ~~-------~~~~~~~PiKln~agvmPvIfassll~~p~~i~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 311 (436) T 1rh5_A 239 RI-------KGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAYYLSTPYGLSSVIS 311 (436) T ss_dssp SS-------TTCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCBCSSSBSSSTTGGGCCCCSSSCCCS T ss_pred CC-------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHCCCC T ss_conf 22-------34444677554401246899999999858999886320366533456777457889999588411210235 Q ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ---763169999999999999998623-7989999999963884476279857999-99999999999999999999999 Q gi|254780241|r 314 ---GRSFYMVLYSVFIVFFAFFYTAIV-FNPKEAADNLKKHGGFIPGIRPGDRTAL-HIDYVLTRVTVVGAGYLVCVCIF 388 (444) Q Consensus 314 ---~~~~y~i~y~ilii~Fs~f~~~i~-~~P~~iAe~L~k~g~~IpGiRPG~~T~~-yL~~v~~rit~~Ga~~l~~la~~ 388 (444) ..++|.++|.+++++|++||+.++ +||||+||||||+|++|||+||||+|.+ ||+|+++|+|++||+|++++|++ T Consensus 312 ~p~~~~~Y~~~~~~l~i~Fs~f~~~~~~~np~~iAe~lkk~g~~IpGiRpG~~T~~~~L~~vi~r~t~~Ga~fl~~ia~l 391 (436) T 1rh5_A 312 DPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATI 391 (436) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 76412789999999999999999998678879999999985980778799941499999989999999999999999999 Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999998488410025799999999999999999999998526564311 Q gi|254780241|r 389 PEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQIQGYLIAQQYEGVFKKS 437 (444) Q Consensus 389 p~~~~~~~~~~~~~gGTslLI~Vgv~l~~~~qi~a~~~~~~Y~~~~~~~ 437 (444) |++++..+ ||||+||+|||++|++||+++|+.||+|++++|.- T Consensus 392 p~~l~~~~------gGTslLI~V~V~~~~~~qi~~~~~~~~y~~~~k~~ 434 (436) T 1rh5_A 392 ANFIGALG------GGTGVLLTVSIVYRMYEQLLRERTSELHPAIAKLL 434 (436) T ss_dssp HHHHCCTT------CSHHHHHHHHHHHHHHHHHHTTCC----------- T ss_pred HHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99998713------37879999999999999999999998728999871 No 6 >3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} Probab=100.00 E-value=0 Score=744.82 Aligned_cols=396 Identities=22% Similarity=0.337 Sum_probs=334.8 Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHH Q ss_conf 98835878899999999999999850679898739889999873035537889986427702220468735478999999 Q gi|254780241|r 15 ASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYISASI 94 (444) Q Consensus 15 ~~~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyItASI 94 (444) .+-.|++|||||++||++++++||+|++||+||+|. +.+++++++++++|| +++|+|+|||+||||||| T Consensus 18 ~~p~~~~~lr~rilfTl~~l~iyrig~~IPlpGi~~---------~~~~~~~~l~~~~gg--~~~SlfaLGI~PyItASI 86 (482) T 3mp7_A 18 ERPKRRVPLRERFMWTGVALILYYVLAEIPVYGIPE---------RIQDYFQFLRVVLAG--RNGSILTLGIGPIVTAGI 86 (482) T ss_dssp --------CTTTHHHHHHHHHHHHHHHHSBCTTCCS---------SCCCSCSSTTTTTCS--CTTBTTSSTTHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------CHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHH T ss_conf 697889987889999999999999972387899892---------234099999998667--765899965899999999 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 99999852154786411463689999988699999999999999997235567622587504799999999999999999 Q gi|254780241|r 95 IVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVW 174 (444) Q Consensus 95 i~QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~~~~~~~~~~~~~~~il~L~aGs~il~w 174 (444) +||||+ .|+++|+|||||+||||+|++|||+|+++|++||++++.+.... ....+++..+.+.++++|++||+++|| T Consensus 87 ImQLL~--~~~l~~l~~~g~~gr~ki~~~tr~ltl~la~iqa~~~~~~~~~~-~~~~~~~~~~~~livl~L~aGt~~lmw 163 (482) T 3mp7_A 87 ILQLLV--GSEIIKLDLANPEDRRFYQALQRVFSVFMCFFEAAVWILGGAFG-RVGVDVTYAIAVLMILQLAMGGIVLII 163 (482) T ss_dssp HTTC-------------------------CHHHHHHHHHHHHHHHHHSSSSS-CC------CTHHHHHHHHHHHHHHHHH T ss_pred HHHHHH--HCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 999987--14266643126656999999999999999999999999861357-642366499999999999999999999 Q ss_pred HHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCC--------C----------------------CHHHHHHH Q ss_conf 99987408898752036210146576788743333200123--------2----------------------15899999 Q gi|254780241|r 175 LGEQITMRGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGS--------I----------------------STPLMLLI 224 (444) Q Consensus 175 l~e~It~~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~~~--------~----------------------~~~~~l~~ 224 (444) |||+|||||+|||+|++|++||++++|++..+.+....... . .....++. T Consensus 164 L~E~It~~GIGnGiSLiI~~gI~~~i~~~~~~~~~~~~~~~~~~~~~~ivg~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 243 (482) T 3mp7_A 164 LDELVSKWGIGSGISLFIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILKGDLWGAIYRGGSAPDMLS 243 (482) T ss_dssp HHHHHHHHSSSCHHHHHHHHHHHHHHHHHHSCCCCCCC---CCSSSCCCSCHHHHHHHHHHHCCSCSSCCCSSSSCCHHH T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH T ss_conf 99998634877771488899999886787504323444356555640288899999999998765434542121889999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCC----- Q ss_conf 999999999999886533232101101211664235643114442000023799999999986888887507777----- Q gi|254780241|r 225 FSSTVAVIALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSS----- 299 (444) Q Consensus 225 ~~~~l~vi~~iV~v~~~~rrIPi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~~~----- 299 (444) +..++++++++||+|+++||||+||+++. .++++|+|+|++|+||+||++++++.|.++++++.... T Consensus 244 ~~~~i~v~~~vv~~~~~~~~IPv~~~~~~--------~~~~~Pikl~~ag~iPiifass~~~~~~~~~~~l~~~~~~~l~ 315 (482) T 3mp7_A 244 VVATIVVFFIVVYFESMRVEIPLGYRGVT--------VRGSYPIRFLYVSNIPIILTFALYANIQLWARVLDRLGHPWLG 315 (482) T ss_dssp HHHHHHHHHHHHHHHHCCEEC--------------------CEECSSSSTTHHHHHHHHHHHHHHHHHHHHHTTSCCSSB T ss_pred HHHHHHHHHHHHHHCCEEEEECCCCCCCC--------CCCCCCEECCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH T ss_conf 99999999987521014786012223222--------3576660033031142679999999899999998751530342 Q ss_pred -----CHHHHHHHHHHCCC------------CCCHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHCCCCCCCCCCCH Q ss_conf -----24799988753066------------763169999999999999998623-798999999996388447627985 Q gi|254780241|r 300 -----SPTWIVGLVDSLGH------------GRSFYMVLYSVFIVFFAFFYTAIV-FNPKEAADNLKKHGGFIPGIRPGD 361 (444) Q Consensus 300 -----~~~~~~~~~~~~~~------------~~~~y~i~y~ilii~Fs~f~~~i~-~~P~~iAe~L~k~g~~IpGiRPG~ 361 (444) ...+..++..++.+ +.++|.++|++++++|+|||+.++ +||||+||||||+|+||||+|||| T Consensus 316 ~~~~~~~~~i~g~~~y~~~p~~~~~~~~~p~~~i~Y~i~~~~l~~~Fs~fy~~i~~~~p~~iAenLkk~G~~IpGiRPG~ 395 (482) T 3mp7_A 316 RFDPTTGSPISGFVLYVIPPRNIFSVIDNPVRAIVYLILTVIFSLLFGYLWVELTGLDARSIARQLQRAGLQIPGFRRDP 395 (482) T ss_dssp CCCCTTSCCCCBSGGGSCCCSSSTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHSSTTGGGCCC--------CCTTTTTT T ss_pred HCCCCCCCCHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCC T ss_conf 03644477124567762897538887527501799999999999999999998607899999999998598188889996 Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 79-999999999999999999999999999999984884100257999999999999999999999985265643110 Q gi|254780241|r 362 RT-ALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQIQGYLIAQQYEGVFKKSR 438 (444) Q Consensus 362 ~T-~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~~~~~gGTslLI~Vgv~l~~~~qi~a~~~~~~Y~~~~~~~~ 438 (444) +| ++||+|+++|+|++||+|++++|++|++++... +|||+||+|||++||+||+|+|+.+++|++++|+-. T Consensus 396 ~T~~~yL~~~i~rit~~Gai~l~~iavlp~~lg~~~------~GTslLI~VgV~~~~~~qi~~~~~~~~Y~~l~k~~g 467 (482) T 3mp7_A 396 RTLEKVLQRYIPYVTFWGSLTVALIAVLADFLGALG------TGTGILLTVGILYRFYEEIAREQITEMFPALRKLFG 467 (482) T ss_dssp STTCC------CTHHHHHHHHHHHHHHHHHHHTCSS------CSHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTS T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 409999999999999999999999999999998843------437689999999999999999999987289999718 No 7 >2wwb_A Protein transport protein SEC61 subunit alpha isoform 1; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Probab=100.00 E-value=0 Score=718.08 Aligned_cols=390 Identities=21% Similarity=0.274 Sum_probs=325.0 Q ss_pred HHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCH Q ss_conf 75125889883587889999999999999985067989873988999987303553788998642770222046873547 Q gi|254780241|r 8 FVSNLNFASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIM 87 (444) Q Consensus 8 ~~~~~~~~~~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~ 87 (444) +.-+. ++..|++|||||++||++++++||+|++||+||||.++ ..+.+ .++++|||++|+|+|+|||+ T Consensus 15 ~lp~v--~~p~~~~~lr~KilfTl~~l~vyr~g~~IPlpGv~~~~--------~~~~~--~~l~~~~a~~~~SifaLGI~ 82 (476) T 2wwb_A 15 ILPEI--QKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSD--------SADPF--YWMRVILASNRGTLMELGIS 82 (476) T ss_dssp HSCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHSCCCSSSTTT--------CSCCC--HHHHHHHCSSCSSSCSSSST T ss_pred HCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH--------HHHHH--HHHHHHCCHHHHHHHHHHHH T ss_conf 48210--38787998788999999999999997368789868305--------56589--99987423222049997659 Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 899999999999852-1547864114636899999886999999999999999972355676225875047999999999 Q gi|254780241|r 88 PYISASIIVQLIAAT-VPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLL 166 (444) Q Consensus 88 PyItASIi~QLL~~~-~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~~~~~~~~~~~~~~~il~L~ 166 (444) |||||||+||||++. +|+++|++|| |+|+|++|||+|+++|++||++++.+... +...+++..+.+.++++|+ T Consensus 83 PyItASIImQLL~~~~~~~l~~~~~~----r~k~~~~tr~lt~~la~iqa~~~~~~~~~--~~~~~~~~~~~~~~~~~L~ 156 (476) T 2wwb_A 83 PIVTSGLIMQLLAGAKIIEVGDTPKD----RALFNGAQKLFGMIITIGQSIVYVMTGMY--GDPSEMGAGICLLITIQLF 156 (476) T ss_dssp HHHHHHHHHHHHHHHCCCSCCSSSSC----SSCHHHHHHHHHHHHHHHHHHHHHHHTSS--CCSSCSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHHHHH T ss_conf 99999999999971711033205365----99999999999999999999999986026--6655664599999999999 Q ss_pred HHHHHHHHHHHHHHH-CCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCC-----------------------------C Q ss_conf 999999999998740-8898752036210146576788743333200123-----------------------------2 Q gi|254780241|r 167 GGTMFLVWLGEQITM-RGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGS-----------------------------I 216 (444) Q Consensus 167 aGs~il~wl~e~It~-~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~~~-----------------------------~ 216 (444) +|++++||+||+||| ||+|||+||+|++||++++|++..+.......+. . T Consensus 157 ~G~~~lmwL~E~it~~~GiGnGiSLiI~~gIv~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~ 236 (476) T 2wwb_A 157 VAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYR 236 (476) T ss_dssp HHHHHHHHHHHHHHTTTCSSCSHHHHHHHHHHHHHHHHHTCCSSCSCCCSCCTTTTCCCHHHHHHHTCTTSSSSSSCSSS T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999888875223535017999999999998886325023126775332107999999999887789998889999 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 15899999999999999999886533232101101211664235643114442000023799999999986888887507 Q gi|254780241|r 217 STPLMLLIFSSTVAVIALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFID 296 (444) Q Consensus 217 ~~~~~l~~~~~~l~vi~~iV~v~~~~rrIPi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~ 296 (444) .....+..+..+++++..++++|+++||||+||+| ++++++|+|+|+|+|||||+||||+++++|.++++++. T Consensus 237 ~~l~~~~~l~~~~~i~~~vv~~~~~~~rIPv~~~~-------~~g~~s~lPiKln~aGviPiIFasall~~p~~i~~~~~ 309 (476) T 2wwb_A 237 QNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSAR-------YRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLS 309 (476) T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHCCBCCCCCBCS-------SSSBCSCCCBCTTTSSHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCC-------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999988997643321036774144333-------46876666743343232109999999987999999972 Q ss_pred CCCCHHH-H--------------------HHHHHHCCCC------------CCHHHHHHHHHHHHHHHHHHHHC-CCHHH Q ss_conf 7772479-9--------------------9887530667------------63169999999999999998623-79899 Q gi|254780241|r 297 VSSSPTW-I--------------------VGLVDSLGHG------------RSFYMVLYSVFIVFFAFFYTAIV-FNPKE 342 (444) Q Consensus 297 ~~~~~~~-~--------------------~~~~~~~~~~------------~~~y~i~y~ilii~Fs~f~~~i~-~~P~~ 342 (444) .....++ . .++.++++|. .++|.++|++++++|+|||+.++ +|||| T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~yl~p~~~~~~~~~~p~~~~~Y~~~~~~l~i~Fs~fy~~i~~~nP~~ 389 (476) T 2wwb_A 310 ARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKD 389 (476) T ss_dssp HHTSCCSCHHHHCSSSTTCSCTTSSSCCSSSHHHHTSCCSSSSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTTSSCCHHH T ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH T ss_conf 13753057787665520023565556610045655168634888875430369999999999999999999960899999 Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999963884476279857999999999999999999999999999999998488410025799999999999999999 Q gi|254780241|r 343 AADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQIQ 422 (444) Q Consensus 343 iAe~L~k~g~~IpGiRPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~~~~~gGTslLI~Vgv~l~~~~qi~ 422 (444) +||||||+|++|||+||| +|++||+|+++|+|++||+|++++|++|++++.. +||||+||+|||++||++|++ T Consensus 390 iAenlkk~g~~IPGiRpg-~t~~yL~~vi~rit~~Gai~L~~iAvlp~~l~~~------~gGTslLI~VgV~l~~~~qi~ 462 (476) T 2wwb_A 390 VAKQLKEQQMVMRGHRET-SMVHELNRYIPTAAAFGGLCIGALSVLADFLGAI------GSGTGILLAVTIIYQYFEIFV 462 (476) T ss_dssp HHHHHHHHCTTTCCCCTT-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS------SCHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHHH T ss_conf 999999869927898997-2499999999999999999999999999999870------447879999999999999999 Q ss_pred HHHHHHH Q ss_conf 9999985 Q gi|254780241|r 423 GYLIAQQ 429 (444) Q Consensus 423 a~~~~~~ 429 (444) .+..... T Consensus 463 ~e~~~~~ 469 (476) T 2wwb_A 463 KEQSEVG 469 (476) T ss_dssp HHHTCCS T ss_pred HHHHHCC T ss_conf 9986567 No 8 >2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phosphoprotein, signal sequence, membrane, ribosome, cytoplasm; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Probab=100.00 E-value=0 Score=678.74 Aligned_cols=388 Identities=17% Similarity=0.200 Sum_probs=320.0 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHH Q ss_conf 83587889999999999999985067989873988999987303553788998642770222046873547899999999 Q gi|254780241|r 17 FSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYISASIIV 96 (444) Q Consensus 17 ~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyItASIi~ 96 (444) ..|++|+|||++||++++++||+| +||+||+|..+ ..+..|.+++++.++|+ +|+|+|+|||+|||||||+| T Consensus 23 p~r~~~lr~ki~~Tl~~l~iy~~~-~IPlpGi~~~~-----~~~~~d~l~~l~~~~a~--~~~SlfaLGI~PyItASIIm 94 (490) T 2ww9_A 23 PFEKLPFDDKIVYTIFAGLIYLFA-QFPLVGLPKAT-----TPNVNDPIYFLRGVFGC--EPRTLLEFGLFPNISSGLIL 94 (490) T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCC-SSCCSCHHHHT-----TTCSSCCCTTTHHHHTC--CSSSTTSSTTHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHC-CCCCCCCCHHH-----HHHHCCHHHHHHHHHCC--CHHHHHHHCHHHHHHHHHHH T ss_conf 888998888999999999999851-46879978556-----43011569999997331--11059997739999999999 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99985215478641146368999998869999999999999999723556762258750479999999999999999999 Q gi|254780241|r 97 QLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVWLG 176 (444) Q Consensus 97 QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~~~~~~~~~~~~~~~il~L~aGs~il~wl~ 176 (444) |||+.. .++|+|||||+||||+|++|||+|+++|++||++++.+.. +..+.+......+++++++|++++||+| T Consensus 95 QLL~~~--~l~~l~~~g~~gr~ki~~~tr~lti~la~iqa~~~v~~~~----~~~~~~~~~~~~i~~~l~~g~~~v~wL~ 168 (490) T 2ww9_A 95 QLLAGL--KVIKVNFKIQSDRELFQSLTKVFAIVQYVILTNIFIFAGY----FGDDLSVVQIGLINFQLVGAGIFTTLLA 168 (490) T ss_dssp HHHHHH--TSSCCCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----SSCCCSTTHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHC--HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 998636--0766261367679999999999999999999999999975----1667431578999999975789999999 Q ss_pred HHHHH-CCCCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCC--------------------------------CCHHHHHH Q ss_conf 98740-8898752036210146576788743333200123--------------------------------21589999 Q gi|254780241|r 177 EQITM-RGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGS--------------------------------ISTPLMLL 223 (444) Q Consensus 177 e~It~-~GIGnG~SLiI~~gIi~~lp~~l~~~~~~~~~~~--------------------------------~~~~~~l~ 223 (444) |+||| ||+|||+|++|++||++++|+.+.+..+...... ......+. T Consensus 169 E~It~~~GiGnGiSLiI~~~I~~~i~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~ 248 (490) T 2ww9_A 169 EVIDKGFGFSSGAMIINTVVIATNLVADTFGVSQIKVGEDDQTEAQGALINLIQGLRSKHKTFIGGIISAFNRDYLPNLT 248 (490) T ss_dssp HHHHTTSSSSCHHHHHHHHHHHHHHHHHHTCCCCCCCCSSCCCSCCCHHHHHHHHHHCCCSSCCCSCCCCCSSSSCCSHH T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 88715545014689999999999999863042020246764100346999999999988888999999998875699999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCC----CC Q ss_conf 99999999999998865332321011012116642356431144420000237999999999868888875077----77 Q gi|254780241|r 224 IFSSTVAVIALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDV----SS 299 (444) Q Consensus 224 ~~~~~l~vi~~iV~v~~~~rrIPi~y~~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~----~~ 299 (444) .+..++++++.++|+|+++||||+||+| ++++++|+|+|+||+||||+|||+++++.|.++.+++.. .. T Consensus 249 ~li~~~~v~~~vvy~~~~~~~IPi~~~~-------~~g~~~~~PiKln~agvmPiIfasall~~~~~~~~~~~~~~~~~~ 321 (490) T 2ww9_A 249 TTIIVLAIAIIVCYLQSVRVELPIRSTR-------ARGTNNVYPIKLLYTGCLSVLFSYTILFYIHIFAFVLIQLVAKNE 321 (490) T ss_dssp HHHHHHHHHHHHHHHTTCCEECCCBCSS-------SSSBCCCCEECHHHHTHHHHHHHHHHHHHCSSSCSTTTHHHHHCC T ss_pred HHHHHHHHHEEEEEEEEEEEEECCCCCC-------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 9999998872799964337984032143-------357774021014533430799999999879999999987621224 Q ss_pred CHHHHHHHHHHCC-----------------C---------CC----CHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHH Q ss_conf 2479998875306-----------------6---------76----3169999999999999998623-79899999999 Q gi|254780241|r 300 SPTWIVGLVDSLG-----------------H---------GR----SFYMVLYSVFIVFFAFFYTAIV-FNPKEAADNLK 348 (444) Q Consensus 300 ~~~~~~~~~~~~~-----------------~---------~~----~~y~i~y~ilii~Fs~f~~~i~-~~P~~iAe~L~ 348 (444) ..++..++...+. + .. .+|.++|++++++|+|||+.++ +||||+||||| T Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~pi~~i~Y~~~~~~l~i~Fs~f~~~i~g~~P~~iAe~Lk 401 (490) T 2ww9_A 322 PTHIICKIMGHYENANNLLAVPTFPLSLLAPPTSFFKGVTQQPLTFITYSAFILVTGIWFADKWQAISGSSARDVALEFK 401 (490) T ss_dssp CCSSSCTTSBCCSCCSSSSCSCSSBSCCSSCCCCSSCCCCSCSHHHHHHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH T ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH T ss_conf 06899999875156677655664331122687313334330415899999999999999999999970899999999999 Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HH Q ss_conf 63884476279857999999999999999999999999999999998488410025799999999999999999999-99 Q gi|254780241|r 349 KHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQIQGYL-IA 427 (444) Q Consensus 349 k~g~~IpGiRPG~~T~~yL~~v~~rit~~Ga~~l~~la~~p~~~~~~~~~~~~~gGTslLI~Vgv~l~~~~qi~a~~-~~ 427 (444) |+|++|||+||| +|++||+|+++|+|++||+|++++|++|++++... +|||+++.|++++++++|++.+. .+ T Consensus 402 k~g~~IPGiRp~-~t~~yL~kvi~rit~~Gai~l~~iavl~~~lg~~g------~Gt~ill~v~vi~~~~~~i~~~~~q~ 474 (490) T 2ww9_A 402 DQGITLMGRREQ-NVAKELNKVIPIAAVTGASVLSLITVIGESLGLKG------KAAGIVVGIAGGFSLLEVITIEYQQS 474 (490) T ss_dssp HHHHTSSSCCCC-CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS------SHHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred HCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 869957798983-37999998899999999999999999999997502------55558999999999999999999998 Q ss_pred HHHHH Q ss_conf 85265 Q gi|254780241|r 428 QQYEG 432 (444) Q Consensus 428 ~~Y~~ 432 (444) +.|.. T Consensus 475 e~~~~ 479 (490) T 2ww9_A 475 GGQSA 479 (490) T ss_dssp CSSCS T ss_pred HHHHH T ss_conf 64899 No 9 >1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A* Probab=85.42 E-value=0.42 Score=24.81 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=24.1 Q ss_pred CCCHHHHHHHHHH------CCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 3798999999996------38844762798579999999999 Q gi|254780241|r 337 VFNPKEAADNLKK------HGGFIPGIRPGDRTALHIDYVLT 372 (444) Q Consensus 337 ~~~P~~iAe~L~k------~g~~IpGiRPG~~T~~yL~~v~~ 372 (444) .++++++.+.+.+ ..+.|||+|||+.-...+++-.. T Consensus 21 ~v~~~~v~~~~~~~~~~~~k~~~ipGFRkGKvP~~vi~k~yg 62 (121) T 1p9y_A 21 TIAADSIETAVKSELVNVAKKVRIDGLRKGKVPMNIVAQRYG 62 (121) T ss_dssp EECHHHHHHHHHHHHHHHHTTCCCTTSCTTCSCHHHHHHHHH T ss_pred EECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH T ss_conf 998999999999999999833888997889889999999985 No 10 >2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A Probab=81.19 E-value=0.88 Score=22.73 Aligned_cols=37 Identities=30% Similarity=0.339 Sum_probs=26.1 Q ss_pred HCCCHHHHHHHHHH------CCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 23798999999996------38844762798579999999999 Q gi|254780241|r 336 IVFNPKEAADNLKK------HGGFIPGIRPGDRTALHIDYVLT 372 (444) Q Consensus 336 i~~~P~~iAe~L~k------~g~~IpGiRPG~~T~~yL~~v~~ 372 (444) +.++++++.+.+.+ ...-|||+|||+.-...+++-.. T Consensus 17 v~i~~eev~~~~~~~~~~~~k~~~ipGFRkGKvP~~vi~k~~g 59 (109) T 2nsc_A 17 YVFGAEEIAQAEDKAVRYLNQRVEIPGFRKGRIPKNVLKMKLG 59 (109) T ss_dssp EECCHHHHHHHHHHHHHHHHTTCCCTTSCTTCCCHHHHHHHHG T ss_pred EEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH T ss_conf 9998999999999999999842779998799888999999988 No 11 >1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A Probab=78.09 E-value=1.5 Score=21.23 Aligned_cols=11 Identities=0% Similarity=-0.019 Sum_probs=5.0 Q ss_pred HCCCCCCCCCC Q ss_conf 50679898739 Q gi|254780241|r 39 FGTYIPLPSID 49 (444) Q Consensus 39 lg~~IPlPGid 49 (444) +-..+.+||.. T Consensus 38 ~~k~~~ipGFR 48 (392) T 1t11_A 38 IAKNRRFDGFR 48 (392) T ss_dssp HHTTCCCTTSC T ss_pred HHHHCCCCCCC T ss_conf 97038889979 No 12 >1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5 Probab=66.96 E-value=2 Score=20.43 Aligned_cols=16 Identities=0% Similarity=0.071 Sum_probs=8.1 Q ss_pred HCCCHHHHHHHHHHCC Q ss_conf 2379899999999638 Q gi|254780241|r 336 IVFNPKEAADNLKKHG 351 (444) Q Consensus 336 i~~~P~~iAe~L~k~g 351 (444) +.++.+|+-+.+.++. T Consensus 360 I~vt~eei~~~i~~~a 375 (432) T 1w26_A 360 LKADEERVKGLIEEMA 375 (432) T ss_dssp CCCCHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHH T ss_conf 9889999999999999 No 13 >2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7 Probab=66.48 E-value=0.89 Score=22.72 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=15.3 Q ss_pred CCCCCCCCCCCHHHHHHHHHH Q ss_conf 388447627985799999999 Q gi|254780241|r 350 HGGFIPGIRPGDRTALHIDYV 370 (444) Q Consensus 350 ~g~~IpGiRPG~~T~~yL~~v 370 (444) ....|||+|||+.-...+++- T Consensus 36 k~~~ipGFRkGKvP~~vi~k~ 56 (112) T 2d3o_1 36 RDVRVPGFRPGKAPRKVIENR 56 (112) T ss_dssp TTSCBTTBCTTCCCSTTHHHH T ss_pred HHCCCCCCCCCCCCHHHHHHH T ss_conf 508899977998788999998 No 14 >3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} PDB: 3gu0_A Probab=62.37 E-value=1.8 Score=20.83 Aligned_cols=12 Identities=8% Similarity=0.359 Sum_probs=6.6 Q ss_pred HHCCCCCCCCCC Q ss_conf 850679898739 Q gi|254780241|r 38 RFGTYIPLPSID 49 (444) Q Consensus 38 rlg~~IPlPGid 49 (444) .+...+-+||.- T Consensus 34 ~~~k~~~ipGFR 45 (433) T 3gty_X 34 YLNQRVEIPGFR 45 (433) T ss_dssp HHHTSCCCCC-- T ss_pred HHHCCCCCCCCC T ss_conf 984717649989 No 15 >3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} Probab=37.54 E-value=5.1 Score=17.86 Aligned_cols=14 Identities=21% Similarity=0.173 Sum_probs=7.8 Q ss_pred CCCHHHHHHCCCCH Q ss_conf 96527787512588 Q gi|254780241|r 1 MASAVEQFVSNLNF 14 (444) Q Consensus 1 ~~~~~~~~~~~~~~ 14 (444) ||...||-+.+.+. T Consensus 1 ~~~~~ek~~~~~~~ 14 (290) T 3ixz_B 1 MAALQEKKSCSQRM 14 (290) T ss_pred CCHHHHHHHHHHHH T ss_conf 93066555698888 No 16 >1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1 Probab=33.93 E-value=18 Score=14.31 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=19.4 Q ss_pred HHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 47864114636899999886999 Q gi|254780241|r 105 SLENLKKEGEQGRKVINQYTRYA 127 (444) Q Consensus 105 ~l~~l~kege~gr~ki~~~tr~l 127 (444) -++++|+.||.-..|++..+|.| T Consensus 15 Lle~Lq~sgevp~~KL~aLq~VL 37 (53) T 1zl8_A 15 LMEHVQKTGEVNNAKLASLQQVL 37 (53) T ss_dssp HHHHHGGGSSSTHHHHHHHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHHHH T ss_conf 99999886999869999999999 Done!