Query gi|254780241|ref|YP_003064654.1| preprotein translocase subunit SecY [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 444
No_of_seqs 128 out of 1544
Neff 6.2
Searched_HMMs 13730
Date Tue May 24 01:16:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780241.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5a_ f.41.1.1 (A:) Preprote 100.0 0 0 715.8 26.3 378 17-425 16-421 (422)
2 d1p9ya_ d.241.2.1 (A:) Trigger 83.8 0.32 2.3E-05 24.1 2.6 37 337-373 18-60 (117)
3 d1t11a2 d.241.2.1 (A:1-129) Tr 70.0 1.7 0.00012 19.4 3.0 36 338-373 19-60 (129)
4 d1zl8a1 a.194.1.1 (A:4-53) Lin 35.0 10 0.00074 14.4 2.3 23 105-127 12-34 (50)
5 d1wpga4 f.33.1.1 (A:1-124,A:24 33.2 11 0.0008 14.2 5.2 27 116-142 134-160 (472)
6 d1y74a1 a.194.1.1 (A:17-73) Li 29.9 10 0.00074 14.4 1.5 24 105-128 13-36 (57)
7 d1c3ca_ a.127.1.1 (A:) Adenylo 9.7 36 0.0027 10.9 5.6 26 329-354 326-351 (429)
8 d1dofa_ a.127.1.1 (A:) Adenylo 9.2 38 0.0028 10.8 4.3 27 328-354 325-351 (402)
9 d1jjcb1 a.6.1.1 (B:1-38,B:152- 8.4 41 0.003 10.6 0.3 28 335-362 13-40 (77)
10 d3bzka1 a.60.2.6 (A:474-563) T 8.0 43 0.0031 10.5 0.3 49 80-128 36-86 (90)
No 1
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=100.00 E-value=0 Score=715.76 Aligned_cols=378 Identities=18% Similarity=0.282 Sum_probs=319.7
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 83587889999999999999985067989873988999987303553788998642770222046873547899999999
Q gi|254780241|r 17 FSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFSLGIMPYISASIIV 96 (444)
Q Consensus 17 ~~~~~el~~Kil~Tl~il~iyrlg~~IPlPGid~~~~~~~~~~~~~~~~~~l~~~sGga~~~~sif~LGI~PyItASIi~ 96 (444)
-.|+.|+|||++||++++++||+|++||+||+|. +..+.+++++.++|+ +++|+|+|||+|||||||+|
T Consensus 16 p~~~~~lr~kil~T~~~l~iy~igs~IPlpgi~~---------~~~~~~~~~~~~~a~--~~~Sif~LGI~PyItASIIm 84 (422)
T d1rh5a_ 16 PVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGA---------QIPAIFEFWQTITAS--RIGTLITLGIGPIVTAGIIM 84 (422)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSC---------CCCSCCTTHHHHHTC--CTTBTTTTTTHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------CCCCHHHHHHHHHCC--CCCCHHHHCHHHHHHHHHHH
T ss_conf 8888978879999999999999843697688898---------864378899998433--30639996819999999999
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99985215478641146368999998869999999999999999723556762258750479999999999999999999
Q gi|254780241|r 97 QLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVWLG 176 (444)
Q Consensus 97 QLL~~~~P~l~~l~kege~gr~ki~~~tr~ltl~~a~iQs~~~~~~l~~~~~~~~~~~~~~~~~~il~L~aGs~il~wl~ 176 (444)
|||+. |+++++|||||+||+|+|++|||+|+++|++||++++.... ..+.+....+.++++|++||+++||||
T Consensus 85 QLL~~--~~l~~~~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~-----~~~~~~~~~~~iv~~L~aGt~~lmwL~ 157 (422)
T d1rh5a_ 85 QLLVG--SGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGA-----FGILTPLLAFLVIIQIAFGSIILIYLD 157 (422)
T ss_dssp HHHHH--HTTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-----SCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99975--16777640166579999999999999999999999995052-----577771599999999999999999999
Q ss_pred HHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHH------HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9874088987520362101465767887433332------0012321589999999999999999988653323210110
Q gi|254780241|r 177 EQITMRGIGNGVSLIIFSGIVAGLPSSLVSVLEL------GRVGSISTPLMLLIFSSTVAVIALVIFFERAQRRLLIQYP 250 (444)
Q Consensus 177 e~It~~GIGnG~SLiI~~gIi~~lp~~l~~~~~~------~~~~~~~~~~~l~~~~~~l~vi~~iV~v~~~~rrIPi~y~ 250 (444)
|+|||||+|||+|++|++||++++|+...+.... ...+.......++.+..++++++++||+|+++||||+||+
T Consensus 158 E~It~~GiGnGiSLiI~~gI~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~i~~~vv~~~~~~~~IPv~~~ 237 (422)
T d1rh5a_ 158 EIVSKYGIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHG 237 (422)
T ss_dssp HHHHHHSSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHTTTTCCCGGGTHHHHHHHHHHHHHHHHTTCEEEEECCCS
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99850183543099999999999887501506799999986401433288999999999999999999774313343333
Q ss_pred HHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCC--------CCCHHHHHHHHHHCCC---------
Q ss_conf 12116642356431144420000237999999999868888875077--------7724799988753066---------
Q gi|254780241|r 251 KRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDV--------SSSPTWIVGLVDSLGH--------- 313 (444)
Q Consensus 251 ~~~~~~~~~~~~~sylPiKin~aGvmPiIfassll~~p~~i~~~~~~--------~~~~~~~~~~~~~~~~--------- 313 (444)
|+ +++++|+|+|+|+|||||+|||++++++|.++++++.. .....+..++.+++.+
T Consensus 238 ~~-------~~~~~~~PiKln~aGviPiIfassll~~p~~i~~~l~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 310 (422)
T d1rh5a_ 238 RI-------KGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAYYLSTPYGLSSVIS 310 (422)
T ss_dssp SS-------TTCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCBCSSSBSSSTTGGGCCCCSSSCCCS
T ss_pred CC-------CCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHCCCC
T ss_conf 22-------34445665003245578999999999708999886331156532566777268899999688320101335
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---763169999999999999998623-7989999999963884476279857999-99999999999999999999999
Q gi|254780241|r 314 ---GRSFYMVLYSVFIVFFAFFYTAIV-FNPKEAADNLKKHGGFIPGIRPGDRTAL-HIDYVLTRVTVVGAGYLVCVCIF 388 (444)
Q Consensus 314 ---~~~~y~i~y~ilii~Fs~f~~~i~-~~P~~iAe~L~k~g~~IpGiRPG~~T~~-yL~~v~~rit~~Ga~~l~~la~~ 388 (444)
+.++|.++|.+++++|++||+.++ +||||+||||||+|++|||+||||+|.+ ||+|+++|+|++||+|++++|++
T Consensus 311 ~p~~~~~Y~i~~~~l~i~Fs~f~~~~~~~~p~~iAe~lkk~g~~IpGiRpG~~T~~~~L~~vi~rit~~Ga~~l~~ia~~ 390 (422)
T d1rh5a_ 311 DPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATI 390 (422)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76405899999999999999999997577999999999986981778899930499999989999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998488410025799999999999999999999
Q gi|254780241|r 389 PEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQIQGYL 425 (444)
Q Consensus 389 p~~~~~~~~~~~~~gGTslLI~Vgv~l~~~~qi~a~~ 425 (444)
|++++..+ ||||+||+|||++||+||+++++
T Consensus 391 p~~l~~~~------gGTslLI~V~v~l~~~~qi~~e~ 421 (422)
T d1rh5a_ 391 ANFIGALG------GGTGVLLTVSIVYRMYEQLLRER 421 (422)
T ss_dssp HHHHCCTT------CSHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998843------56879999999999999999821
No 2
>d1p9ya_ d.241.2.1 (A:) Trigger factor ribosome-binding domain {Escherichia coli [TaxId: 562]}
Probab=83.78 E-value=0.32 Score=24.06 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHHH------CCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 3798999999996------388447627985799999999999
Q gi|254780241|r 337 VFNPKEAADNLKK------HGGFIPGIRPGDRTALHIDYVLTR 373 (444)
Q Consensus 337 ~~~P~~iAe~L~k------~g~~IpGiRPG~~T~~yL~~v~~r 373 (444)
.++++++.+.+.+ ..+.|||+|||+.-...+++....
T Consensus 18 ~v~~~~v~~~~~~~~~~~~k~~~ipGFRkGKvP~~vi~k~yg~ 60 (117)
T d1p9ya_ 18 TIAADSIETAVKSELVNVAKKVRIDGLRKGKVPMNIVAQRYGA 60 (117)
T ss_dssp EECHHHHHHHHHHHHHHHHTTCCCTTSCTTCSCHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 9989999999999999998228888867887658999998748
No 3
>d1t11a2 d.241.2.1 (A:1-129) Trigger factor ribosome-binding domain {Vibrio cholerae [TaxId: 666]}
Probab=69.98 E-value=1.7 Score=19.40 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=22.2
Q ss_pred CCHHHHHHHHH------HCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 79899999999------6388447627985799999999999
Q gi|254780241|r 338 FNPKEAADNLK------KHGGFIPGIRPGDRTALHIDYVLTR 373 (444)
Q Consensus 338 ~~P~~iAe~L~------k~g~~IpGiRPG~~T~~yL~~v~~r 373 (444)
++.+++.+.+. +....|||+|||+.-..-+++....
T Consensus 19 v~~~e~~~~~~~~~~~~~k~~~ipGFRkGKvP~~ii~k~~~~ 60 (129)
T d1t11a2 19 VPAANIEDAVAAELRNIAKNRRFDGFRKGKVPMKMVAKMYGK 60 (129)
T ss_dssp ECHHHHHHHHHHHHHHHHTTCCCTTSCSSCCCHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 989999999999999999757789877999739999998501
No 4
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=35.04 E-value=10 Score=14.42 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=19.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 47864114636899999886999
Q gi|254780241|r 105 SLENLKKEGEQGRKVINQYTRYA 127 (444)
Q Consensus 105 ~l~~l~kege~gr~ki~~~tr~l 127 (444)
-++++|+.||.-..|++..+|.|
T Consensus 12 Lle~Lq~sgevp~~KL~aLqkVL 34 (50)
T d1zl8a1 12 LMEHVQKTGEVNNAKLASLQQVL 34 (50)
T ss_dssp HHHHHGGGSSSTHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 99999886999869999999999
No 5
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=33.16 E-value=11 Score=14.23 Aligned_cols=27 Identities=0% Similarity=0.103 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999886999999999999999972
Q gi|254780241|r 116 GRKVINQYTRYATVLLGILQAYGIAVG 142 (444)
Q Consensus 116 gr~ki~~~tr~ltl~~a~iQs~~~~~~ 142 (444)
.++|+...-+.+....+.+-+.+....
T Consensus 134 ~d~~l~~~g~~i~~~~~~~~~~~~~~~ 160 (472)
T d1wpga4 134 LQQKLDEFGEQLSKVISLICVAVWLIN 160 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 888999999999899997879999999
No 6
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.88 E-value=10 Score=14.45 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=19.8
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 478641146368999998869999
Q gi|254780241|r 105 SLENLKKEGEQGRKVINQYTRYAT 128 (444)
Q Consensus 105 ~l~~l~kege~gr~ki~~~tr~lt 128 (444)
-++++|+.||.-..|++..+|.|-
T Consensus 13 Lle~LQ~~gevp~~KL~aLqkVLq 36 (57)
T d1y74a1 13 LLERLQRSGELPPQKLQALQRVLQ 36 (57)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 999998869998399999999999
No 7
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]}
Probab=9.70 E-value=36 Score=10.90 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=20.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHCCCCC
Q ss_conf 99999862379899999999638844
Q gi|254780241|r 329 FAFFYTAIVFNPKEAADNLKKHGGFI 354 (444)
Q Consensus 329 Fs~f~~~i~~~P~~iAe~L~k~g~~I 354 (444)
+...-..+.+|++.+.+|+..+.+++
T Consensus 326 ~~~~i~~L~vn~erm~~nl~~s~g~i 351 (429)
T d1c3ca_ 326 ATNVVRNMKVNEERMKKNIDLTKGLV 351 (429)
T ss_dssp HHHHHHHCEECHHHHHHHHTTTTTGG
T ss_pred HHHHHHCCCCCHHHHHHHHHHHCCHH
T ss_conf 77886002210689999998614877
No 8
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=9.25 E-value=38 Score=10.79 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=20.0
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCCC
Q ss_conf 999999862379899999999638844
Q gi|254780241|r 328 FFAFFYTAIVFNPKEAADNLKKHGGFI 354 (444)
Q Consensus 328 ~Fs~f~~~i~~~P~~iAe~L~k~g~~I 354 (444)
.+......+.+|++.+.+|+.++..++
T Consensus 325 ~~~~~l~~l~vn~erm~~~l~~s~~~i 351 (402)
T d1dofa_ 325 SALRVLKNVYIDEERITENLQKALPYI 351 (402)
T ss_dssp HHHHHHHHCEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEECHHHHHHHHHHHCCHH
T ss_conf 999987649998999999998515866
No 9
>d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=8.36 E-value=41 Score=10.56 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=21.0
Q ss_pred HHCCCHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 6237989999999963884476279857
Q gi|254780241|r 335 AIVFNPKEAADNLKKHGGFIPGIRPGDR 362 (444)
Q Consensus 335 ~i~~~P~~iAe~L~k~g~~IpGiRPG~~ 362 (444)
....+|+++||.|-..|.-+.++.+.++
T Consensus 13 ~~~~s~~eLae~LT~~G~EVE~i~~~~d 40 (77)
T d1jjcb1 13 PELESPEVLEERLAGLGFETDRIERVEE 40 (77)
T ss_dssp TTCCCHHHHHHHHHHHTCCEEEEEECCC
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 8999999999998614540100223223
No 10
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.03 E-value=43 Score=10.47 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=33.0
Q ss_pred HHHHH-CCHHHHHHHHHHHHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 46873-5478999999999998-5215478641146368999998869999
Q gi|254780241|r 80 AVFSL-GIMPYISASIIVQLIA-ATVPSLENLKKEGEQGRKVINQYTRYAT 128 (444)
Q Consensus 80 sif~L-GI~PyItASIi~QLL~-~~~P~l~~l~kege~gr~ki~~~tr~lt 128 (444)
.|..+ ||+|-....|+-.--. +-+-..++|.+-..-|.+++++...|++
T Consensus 36 ~L~~lpGig~~~A~~Iv~~R~~~G~f~s~edL~~v~gi~~k~~e~i~~~l~ 86 (90)
T d3bzka1 36 LLARISGLNSTLAQNIVAHRDANGAFRTRDELKKVSRLGEKTFEQAAGFLR 86 (90)
T ss_dssp HHTTSTTCCHHHHHHHHHHHHHHCSCSSSGGGGGSTTCCHHHHHHHHTTEE
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHCCCEE
T ss_conf 996778989999999999999869978899995078989999998268876
Done!