PSIBLAST alignment of GI: 254780241 and protein with PDB id: 1rh5
>gi|40889639|pdb|1RH5|A Chain A, The Structure Of A Protein Conducting Channel Length = 436
Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats.
Identities = 70/426 (16%), Positives = 152/426 (35%), Gaps = 59/426 (13%)
Query: 24 KSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMAVFS 83
K ++ +T I L++Y I + ++ IF + + A + +
Sbjct: 24 KEKLKWTGIVLVLYFIMGCIDVY---------TAGAQIPAIFEFWQTIT--ASRIGTLIT 72
Query: 84 LGIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGL 143
LGI P ++A II+QL+ + + + + R + + ++++ ++A
Sbjct: 73 LGIGPIVTAGIIMQLLVGS--GIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGA- 129
Query: 144 KNGQGIVSDSDYFFVFSTIITLLGGTMFLVWLGEQITMRGIGNGVSLIIFSGIVAGL--- 200
G F II + G++ L++L E ++ GIG+G+ L I +G+ +
Sbjct: 130 ----GAFGILTPLLAFLVIIQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIFVG 185
Query: 201 ---PSSLVSVLELGRVGSISTPLMLLIFSSTVAVIALVIFFERAQRRLLIQYPKRQVGNR 257
P + + + + T+ V +V++ E + + + + + +
Sbjct: 186 ALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVG 245
Query: 258 MFQDDVSYLPLKLNTAGVVPSIFASSLLLLPA--------TIMGFIDVSSSPTWIVGLVD 309
+ P+K +P I A++L + + + G+
Sbjct: 246 KY-------PIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAY 298
Query: 310 SLGHGR------------SFYMVLYSVFIVFFAFFYT-AIVFNPKEAADNLKKHGGFIPG 356
L YM+ + V F F+ +PK A + G I G
Sbjct: 299 YLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKG 358
Query: 357 IRPG-DRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVL 415
R + + +TV+ + ++ + + A+ GT +L+ VS+V
Sbjct: 359 FRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGALG------GGTGVLLTVSIVY 412
Query: 416 DTIVQI 421
Q+
Sbjct: 413 RMYEQL 418