RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780241|ref|YP_003064654.1| preprotein translocase subunit
SecY [Candidatus Liberibacter asiaticus str. psy62]
(444 letters)
>2akh_Y Preprotein translocase SECY subunit; protein transport,
translocation, transmembrane, transport; 14.90A
{Escherichia coli} PDB: 2aki_Y (Y:41-400)
Length = 360
Score = 331 bits (849), Expect = 2e-91
Identities = 180/360 (50%), Positives = 254/360 (70%), Gaps = 3/360 (0%)
Query: 81 VFSLGIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIA 140
+F+LGIMPYISASII+QL+ P+L +KKEGE GR+ I+QYTRY T++L I Q+ GIA
Sbjct: 1 IFALGIMPYISASIIIQLLTVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIA 60
Query: 141 VGLKN---GQGIVSDSDYFFVFSTIITLLGGTMFLVWLGEQITMRGIGNGVSLIIFSGIV 197
GL N QG+V + + F F+ +++L+ GTMFL+WLGEQIT RGIGNG+S+IIF+GIV
Sbjct: 61 TGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFLMWLGEQITERGIGNGISIIIFAGIV 120
Query: 198 AGLPSSLVSVLELGRVGSISTPLMLLIFSSTVAVIALVIFFERAQRRLLIQYPKRQVGNR 257
AGLP ++ +E R G + ++LL+ AV V+F ER QRR+++ Y KRQ G R
Sbjct: 121 AGLPPAIAHTIEQARQGDLHFLVLLLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQGRR 180
Query: 258 MFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSSPTWIVGLVDSLGHGRSF 317
++ ++LPLK+N AGV+P+IFASS++L PATI + + W+ + L G+
Sbjct: 181 VYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWFGGGTGWNWLTTISLYLQPGQPL 240
Query: 318 YMVLYSVFIVFFAFFYTAIVFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVV 377
Y++LY+ I+FF FFYTA+VFNP+E ADNLKK G F+PGIRPG++TA +ID V+TR+T+V
Sbjct: 241 YVLLYASAIIFFCFFYTALVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLV 300
Query: 378 GAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQIQGYLIAQQYEGVFKKS 437
GA Y+ +C+ PE + VP GTSLLI+V V++D + Q+Q +++ QYE KK+
Sbjct: 301 GALYITFICLIPEFMRDAMKVPFYFGGTSLLIVVVVIMDFMAQVQTLMMSSQYESALKKA 360
>1rh5_A Preprotein translocase SECY subunit; protein translocation,
SECY, membrane protein, protein channels, protein
transport; 3.20A {Methanocaldococcus jannaschii} (A:)
Length = 436
Score = 288 bits (737), Expect = 1e-78
Identities = 69/453 (15%), Positives = 153/453 (33%), Gaps = 59/453 (13%)
Query: 14 FASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSG 73
+ K ++ +T I L++Y I + + + +
Sbjct: 14 VELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAG-----------AQIPAIFEFWQTI 62
Query: 74 GAVERMAVFSLGIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGI 133
A + +LGI P ++A II+QL+ + + + R + + ++++
Sbjct: 63 TASRIGTLITLGIGPIVTAGIIMQLL--VGSGIIQMDLSIPENRALFQGCQKLLSIIMCF 120
Query: 134 LQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVWLGEQITMRGIGNGVSLIIF 193
++A G F II + G++ L++L E ++ GIG+G+ L I
Sbjct: 121 VEAVLFVGAGAFG-----ILTPLLAFLVIIQIAFGSIILIYLDEIVSKYGIGSGIGLFIA 175
Query: 194 SGIVAGLPSSLVSVLEL------GRVGSISTPLMLLIFSSTVAVIALVIFFERAQRRLLI 247
+G+ + + + + + T+ V +V++ E + + +
Sbjct: 176 AGVSQTIFVGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPL 235
Query: 248 QYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSS-------- 299
+ + + P+K +P I A++L +
Sbjct: 236 AHGRIKGAV-------GKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYE 288
Query: 300 ------------SPTWIVGLVDSLGHGRSFYMVLYSVFIVFFAFFYTAI-VFNPKEAADN 346
S + + V S YM+ + V F F+ +PK A
Sbjct: 289 GGRAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKR 348
Query: 347 LKKHGGFIPGIRPGDRTALH-IDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGT 405
+ G I G R ++ H + + +TV+ + ++ + + GT
Sbjct: 349 IGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANF------IGALGGGT 402
Query: 406 SLLIIVSVVLDTIVQIQGYLIAQQYEGVFKKSR 438
+L+ VS+V Q+ ++ + + K
Sbjct: 403 GVLLTVSIVYRMYEQLLRERTSELHPAIAKLLN 435
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC,
protein-conducting-channel, membrane, protein transport,
translocation, transmembrane, transport; 3.20A {Thermus
thermophilus} PDB: 2zqp_Y (Y:211-434)
Length = 224
Score = 195 bits (496), Expect = 1e-50
Identities = 72/227 (31%), Positives = 135/227 (59%), Gaps = 4/227 (1%)
Query: 215 SISTPLMLLIFSSTVAVIALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAG 274
++ L + V A + ++A+RR+ +QY ++ VG R++ +Y+P+KLN AG
Sbjct: 1 EVNLVAFLFFLAFIVLAFAGMAAVQQAERRIPVQYARKVVGGRVYGGQATYIPIKLNAAG 60
Query: 275 VVPSIFASSLLLLPATIMGFIDVSSSPTWIVGLVDSLGHGRSFYMVLYSVFIVFFAFFYT 334
V+P IFA+++L +P + + G+ + R + + + ++ F + YT
Sbjct: 61 VIPIIFAAAILQIPIFLAAPF---QDNPVLQGIANFFNPTRPSGLFIEVLLVILFTYVYT 117
Query: 335 AIVFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIA 394
A+ F+PK A++L+++GGFIPGIRPG+ T ++++++R+T+ GA +L V + P+ +
Sbjct: 118 AVQFDPKRIAESLREYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLLPQIIQN 177
Query: 395 VTGV-PVSLSGTSLLIIVSVVLDTIVQIQGYLIAQQYEGVFKKSRSK 440
+TG+ ++ SG LLI+V V LDT+ Q++ L+ + YEG + R +
Sbjct: 178 LTGIHSIAFSGIGLLIVVGVALDTLRQVESQLMLRSYEGFLSRGRLR 224
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC,
protein-conducting-channel, membrane, protein transport,
translocation, transmembrane, transport; 3.20A {Thermus
thermophilus} PDB: 2zqp_Y (Y:12-195)
Length = 184
Score = 191 bits (486), Expect = 2e-49
Identities = 79/183 (43%), Positives = 116/183 (63%), Gaps = 5/183 (2%)
Query: 21 KDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVERMA 80
+L+ R++FT++ L YR G +IP P +D + ++ G+FG+ N+FSGG ER +
Sbjct: 1 PELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEFLRTAQGGVFGIINLFSGGNFERFS 60
Query: 81 VFSLGIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIA 140
+F+LGIMPYI+A+II+Q++ VP+LE L KEGE+GR++INQYTR + LG Q + +A
Sbjct: 61 IFALGIMPYITAAIIMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLA 120
Query: 141 VGLKNGQG-----IVSDSDYFFVFSTIITLLGGTMFLVWLGEQITMRGIGNGVSLIIFSG 195
+G FF F ++T + G L+W+ E+IT GIGNG SLIIF+G
Sbjct: 121 TAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVAGIALLLWMAERITEYGIGNGTSLIIFAG 180
Query: 196 IVA 198
IV
Sbjct: 181 IVV 183
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase
membrane protein translocation protein- protein complex,
ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
(G:1-181)
Length = 181
Score = 173 bits (439), Expect = 6e-44
Identities = 68/177 (38%), Positives = 117/177 (66%), Gaps = 6/177 (3%)
Query: 14 FASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSG 73
+ K+L+ + +FT++ ++YR G++IP+P I+ + ++ +F L+++FSG
Sbjct: 5 LKALFELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEALRDFLKAFEGSVFALYDIFSG 64
Query: 74 GAVERMAVFSLGIMPYISASIIVQLIAATVPSLENL-KKEGEQGRKVINQYTRYATVLLG 132
G + R+ VF+LG+MPYISASI++QL+ +PSL+ L K+EG+ GR IN+YT+Y T+ +
Sbjct: 65 GNLGRLTVFALGVMPYISASIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVA 124
Query: 133 ILQAYGIAVGLKN-----GQGIVSDSDYFFVFSTIITLLGGTMFLVWLGEQITMRGI 184
+Q+ GIA ++ G +V + F+ T++TL+ GTMFLVW+ ++IT +GI
Sbjct: 125 TVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLVAGTMFLVWIADRITEKGI 181
>3din_C Preprotein translocase subunit SECY; protein translocation,
membrane protein, ATPase, ATP- binding, cytoplasm, inner
membrane, nucleotide-binding; HET: ADP; 4.50A
{Thermotoga maritima MSB8} (C:1-183)
Length = 183
Score = 172 bits (437), Expect = 8e-44
Identities = 70/179 (39%), Positives = 117/179 (65%), Gaps = 8/179 (4%)
Query: 14 FASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQ-----SKSAGIFGLF 68
F + + +L+ RI+FT +ALIV+R G YIP+P ++ ++ + F+ + AGI +
Sbjct: 5 FKNAFKIPELRDRIIFTFLALIVFRMGIYIPVPGLNLEAWGEIFRRIAETAGVAGILSFY 64
Query: 69 NMFSGGAVERMAVFSLGIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYAT 128
++F+GGA+ R +VF++ + PYI+ASII+QL+A+ +PSL+ + +EGE+GRK +YTR T
Sbjct: 65 DVFTGGALSRFSVFTMSVTPYITASIILQLLASVMPSLKEMLREGEEGRKKFAKYTRRLT 124
Query: 129 VLLGILQAYGIAVGLKNG---QGIVSDSDYFFVFSTIITLLGGTMFLVWLGEQITMRGI 184
+L+G QA+ ++ L + F + +++L GTMFL+WLGE+IT +GI
Sbjct: 125 LLIGGFQAFFVSFSLARSNPDMVAPGVNVLQFTVLSTMSMLAGTMFLLWLGERITEKGI 183
>3din_C Preprotein translocase subunit SECY; protein translocation,
membrane protein, ATPase, ATP- binding, cytoplasm, inner
membrane, nucleotide-binding; HET: ADP; 4.50A
{Thermotoga maritima MSB8} (C:208-387)
Length = 180
Score = 165 bits (420), Expect = 8e-42
Identities = 58/186 (31%), Positives = 109/186 (58%), Gaps = 7/186 (3%)
Query: 213 VGSISTPLMLLIFSSTVAVIALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNT 272
+G ++ + + + + I +I ++A+RR+ IQY +R G R++ +YLP+K+N
Sbjct: 1 LGGLNLLEWIFLIAVALITIFGIILVQQAERRITIQYARRVTGRRVYGGASTYLPIKVNQ 60
Query: 273 AGVVPSIFASSLLLLPATIMGFIDVSSSPTWIVGLVDSLGHGRSFYMVLYSVFIVFFAFF 332
GV+P IFAS+++ +P+ I + + G Y+++Y + + FF +F
Sbjct: 61 GGVIPIIFASAIVSIPSAIASITNNETLKNLF-------RAGGFLYLLIYGLLVFFFTYF 113
Query: 333 YTAIVFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVGAGYLVCVCIFPEAL 392
Y+ ++F+P+E ++N++K+GG+IPG+RPG T ++ VL RVT +GA +LV + + P +
Sbjct: 114 YSVVIFDPREISENIRKYGGYIPGLRPGRSTEQYLHRVLNRVTFIGAVFLVVIALLPYLV 173
Query: 393 IAVTGV 398
V
Sbjct: 174 QGAIKV 179
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein,
transmembrane, phosphoprotein, signal sequence,
membrane, ribosome, cytoplasm; 8.60A {Saccharomyces
cerevisiae} PDB: 2wwa_A (A:1-215)
Length = 215
Score = 157 bits (398), Expect = 3e-39
Identities = 33/206 (16%), Positives = 67/206 (32%), Gaps = 15/206 (7%)
Query: 14 FASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSG 73
+IV+TI A ++Y F PL + + ++ +
Sbjct: 20 VELPFEKLPFDDKIVYTIFAGLIYLFA-QFPLVGLPKATTPNVND-------PIYFLRGV 71
Query: 74 GAVERMAVFSLGIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGI 133
E + G+ P IS+ +I+QL+ + + + + R++ T+ ++ +
Sbjct: 72 FGCEPRTLLEFGLFPNISSGLILQLL--AGLKVIKVNFKIQSDRELFQSLTKVFAIVQYV 129
Query: 134 LQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVWLGEQITMR-GIGNGVSLII 192
+ D + L+G +F L E I G +G +I
Sbjct: 130 ILTNIFIFAG----YFGDDLSVVQIGLINFQLVGAGIFTTLLAEVIDKGFGFSSGAMIIN 185
Query: 193 FSGIVAGLPSSLVSVLELGRVGSIST 218
I L + V ++ T
Sbjct: 186 TVVIATNLVADTFGVSQIKVGEDDQT 211
>2wwb_A Protein transport protein SEC61 subunit alpha isoform 1;
ribosome, protein EXIT tunnel, cotranslational protein
translocation, protein conducting channel; 6.48A {Canis
lupus familiaris} (A:252-476)
Length = 225
Score = 153 bits (388), Expect = 4e-38
Identities = 36/237 (15%), Positives = 73/237 (30%), Gaps = 48/237 (20%)
Query: 233 ALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIM 292
A+VI+F+ + L I+ + + + P+KL +P I S+L+ I
Sbjct: 2 AVVIYFQGFRVDLPIKSARYRGQY-------NTYPIKLFYTSNIPIILQSALVSNLYVIS 54
Query: 293 GFIDVSSSPTWIVGLVDSLGH---------------------------------GRSFYM 319
+ S +V L+ + Y+
Sbjct: 55 QMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYI 114
Query: 320 VLYSVFIVFFAFFYTAI-VFNPKEAADNLKKHGGFIPGIRPGDRTALHIDYVLTRVTVVG 378
V FF+ + + + K+ A LK+ + G R ++ + G
Sbjct: 115 VFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETS-MVHELNRYIPTAAAFG 173
Query: 379 AGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQIQGYLIAQQYEGVFK 435
+ + + + L A+ SGT +L+ V+++ G
Sbjct: 174 GLCIGALSVLADFLGAI------GSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALL 224
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein,
transmembrane, phosphoprotein, signal sequence,
membrane, ribosome, cytoplasm; 8.60A {Saccharomyces
cerevisiae} PDB: 2wwa_A (A:241-490)
Length = 250
Score = 147 bits (372), Expect = 3e-36
Identities = 35/256 (13%), Positives = 76/256 (29%), Gaps = 49/256 (19%)
Query: 222 LLIFSSTVAVIALVIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFA 281
L +A+ +V + + + L I+ + + N + P+KL G + +F+
Sbjct: 7 LTTTIIVLAIAIIVCYLQSVRVELPIRSTRARGTN-------NVYPIKLLYTGCLSVLFS 59
Query: 282 SSLLLLPATIMGFIDVS----------------------------------SSPTWIVGL 307
++L + + PT
Sbjct: 60 YTILFYIHIFAFVLIQLVAKNEPTHIICKIMGHYENANNLLAVPTFPLSLLAPPTSFFKG 119
Query: 308 VDSLGHGRSFYMVLYSVFIVFFAFFYTAI-VFNPKEAADNLKKHGGFIPGIRPGDRTALH 366
V Y V ++FA + AI + ++ A K G + G R + A
Sbjct: 120 VTQQPLTFITYSAFILVTGIWFADKWQAISGSSARDVALEFKDQGITLMGRREQN-VAKE 178
Query: 367 IDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQIQGYLI 426
++ V+ V GA L + + E+L + +++ ++ + I
Sbjct: 179 LNKVIPIAAVTGASVLSLITVIGESL------GLKGKAAGIVVGIAGGFSLLEVITIEYQ 232
Query: 427 AQQYEGVFKKSRSKKK 442
+ +
Sbjct: 233 QSGGQSALNQVLGVPG 248
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase
membrane protein translocation protein- protein complex,
ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
(G:232-271,G:331-352)
Length = 62
Score = 74.0 bits (182), Expect = 4e-14
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 235 VIFFERAQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMG 293
+++ + A+RR+ IQYP RQVG +++ +YLP+K+N AG+ P A +L A I G
Sbjct: 1 IVYVQEAERRIPIQYPGRQVGRQLYAGRKTYLPIKINPAGINPVELAENLHKAGAFIPG 59
Score = 31.6 bits (72), Expect = 0.21
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 339 NPKEAADNLKKHGGFIPGIRP 359
NP E A+NL K G FIPG+RP
Sbjct: 42 NPVELAENLHKAGAFIPGVRP 62
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase
membrane protein translocation protein- protein complex,
ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
(G:272-330)
Length = 59
Score = 66.1 bits (162), Expect = 9e-12
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 275 VVPSIFASSLLLLPATIMGFIDVSSSPTWIVGLVDSLGHGRSFYMVLYSVFIVFFAFFYT 334
V+P IFA +LLL+P+T++ F+ +I + D G FY LY FIVFF +FYT
Sbjct: 1 VIPIIFAQALLLIPSTLLNFVQNP----FIKVIADMFQPGAIFYNFLYVTFIVFFTYFYT 56
Query: 335 AIV 337
A++
Sbjct: 57 AVL 59
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 29.1 bits (65), Expect = 1.1
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 235 VIFFER-AQRRLLIQYPKRQVGNRMFQDDVSYLPLK--LNT 272
A+ + ++ ++Q GN ++ D PL+ L T
Sbjct: 71 TREIHNEAESQ--LRAAQQQWGNDFYKRDPRIAPLRGALAT 109
>2wwb_A Protein transport protein SEC61 subunit alpha isoform 1;
ribosome, protein EXIT tunnel, cotranslational protein
translocation, protein conducting channel; 6.48A {Canis
lupus familiaris} (A:63-154)
Length = 92
Score = 27.7 bits (62), Expect = 3.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 75 AVERMAVFSLGIMPYISASIIVQLIAAT 102
A R + LGI P +++ +I+QL+A
Sbjct: 8 ASNRGTLMELGISPIVTSGLIMQLLAGA 35
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI,
protein structure initiative, MCSG, NAD-dependent; HET:
G6P NAD; 2.05A {Bacillus subtilis} (X:1-194,X:401-472)
Length = 266
Score = 26.9 bits (59), Expect = 5.3
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 373 RVTVVGAGYLVCVCIFPEALIAVTGVPVS 401
+ + G G I L + P+
Sbjct: 30 SIVIAGGGSTFTPGIVLXLLDHLEEFPIR 58
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+,
K+-ATPase, P-type ATPase, membrane protein, hydrolase,
aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} (B:)
Length = 290
Score = 26.8 bits (59), Expect = 6.2
Identities = 7/57 (12%), Positives = 16/57 (28%), Gaps = 5/57 (8%)
Query: 317 FYMVLYSVFIVFFAFFYTAIVF--NPKEAADNLKKHG---GFIPGIRPGDRTALHID 368
+Y+ Y V FA ++ +P + P + + +
Sbjct: 43 YYVAFYVVMSGIFALCIYVLMRTIDPYTPDYQDQLKSPGVTLRPDVYGEKGLDISYN 99
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.326 0.142 0.403
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,174,042
Number of extensions: 144405
Number of successful extensions: 578
Number of sequences better than 10.0: 1
Number of HSP's gapped: 541
Number of HSP's successfully gapped: 33
Length of query: 444
Length of database: 4,956,049
Length adjustment: 91
Effective length of query: 353
Effective length of database: 1,879,794
Effective search space: 663567282
Effective search space used: 663567282
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.7 bits)