RPSBLAST alignment of GI: 254780241 and SCOP domain: d1rh5a_

Alignment

 Score =  261 bits (668), Expect = 9e-71
 Identities = 70/432 (16%), Positives = 158/432 (36%), Gaps = 59/432 (13%)

Query: 19  RAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSKSAGIFGLFNMFSGGAVER 78
           +    K ++ +T I L++Y     I + +           ++   IF  +   +      
Sbjct: 18  KEITFKEKLKWTGIVLVLYFIMGCIDVYTAG---------AQIPAIFEFWQTITAS--RI 66

Query: 79  MAVFSLGIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYG 138
             + +LGI P ++A II+QL+      +  +     + R +     +  ++++  ++A  
Sbjct: 67  GTLITLGIGPIVTAGIIMQLL--VGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVL 124

Query: 139 IAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVWLGEQITMRGIGNGVSLIIFSGIVA 198
                  G G          F  II +  G++ L++L E ++  GIG+G+ L I +G+  
Sbjct: 125 FV-----GAGAFGILTPLLAFLVIIQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQ 179

Query: 199 GLPS------SLVSVLELGRVGSISTPLMLLIFSSTVAVIALVIFFERAQRRLLIQYPKR 252
            +          +       +  +     +     T+ V  +V++ E  +  + + + + 
Sbjct: 180 TIFVGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRI 239

Query: 253 QVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIM-------------------- 292
           +     +       P+K      +P I A++L                            
Sbjct: 240 KGAVGKY-------PIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAV 292

Query: 293 -GFIDVSSSPTWIVGLVDSLGHGRSFYMVLYSVFIVFFAFFYTAIVFNPKEAADNLKKHG 351
            G     S+P  +  ++    H   + + +    ++F  F+      +PK  A  +   G
Sbjct: 293 DGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLG 352

Query: 352 GFIPGIRPGDRTALH-IDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLII 410
             I G R  ++   H +   +  +TV+ + ++  +      + A+ G      GT +L+ 
Sbjct: 353 MAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGALGG------GTGVLLT 406

Query: 411 VSVVLDTIVQIQ 422
           VS+V     Q+ 
Sbjct: 407 VSIVYRMYEQLL 418

SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]