BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780241|ref|YP_003064654.1| preprotein translocase subunit
SecY [Candidatus Liberibacter asiaticus str. psy62]
         (444 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780241|ref|YP_003064654.1| preprotein translocase subunit SecY [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 444

 Score =  881 bits (2277), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/444 (100%), Positives = 444/444 (100%)

Query: 1   MASAVEQFVSNLNFASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSK 60
           MASAVEQFVSNLNFASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSK
Sbjct: 1   MASAVEQFVSNLNFASFSRAKDLKSRIVFTIIALIVYRFGTYIPLPSIDFISYSKAFQSK 60

Query: 61  SAGIFGLFNMFSGGAVERMAVFSLGIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVI 120
           SAGIFGLFNMFSGGAVERMAVFSLGIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVI
Sbjct: 61  SAGIFGLFNMFSGGAVERMAVFSLGIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVI 120

Query: 121 NQYTRYATVLLGILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVWLGEQIT 180
           NQYTRYATVLLGILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVWLGEQIT
Sbjct: 121 NQYTRYATVLLGILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVWLGEQIT 180

Query: 181 MRGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGSISTPLMLLIFSSTVAVIALVIFFER 240
           MRGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGSISTPLMLLIFSSTVAVIALVIFFER
Sbjct: 181 MRGIGNGVSLIIFSGIVAGLPSSLVSVLELGRVGSISTPLMLLIFSSTVAVIALVIFFER 240

Query: 241 AQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSS 300
           AQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSS
Sbjct: 241 AQRRLLIQYPKRQVGNRMFQDDVSYLPLKLNTAGVVPSIFASSLLLLPATIMGFIDVSSS 300

Query: 301 PTWIVGLVDSLGHGRSFYMVLYSVFIVFFAFFYTAIVFNPKEAADNLKKHGGFIPGIRPG 360
           PTWIVGLVDSLGHGRSFYMVLYSVFIVFFAFFYTAIVFNPKEAADNLKKHGGFIPGIRPG
Sbjct: 301 PTWIVGLVDSLGHGRSFYMVLYSVFIVFFAFFYTAIVFNPKEAADNLKKHGGFIPGIRPG 360

Query: 361 DRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQ 420
           DRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQ
Sbjct: 361 DRTALHIDYVLTRVTVVGAGYLVCVCIFPEALIAVTGVPVSLSGTSLLIIVSVVLDTIVQ 420

Query: 421 IQGYLIAQQYEGVFKKSRSKKKNS 444
           IQGYLIAQQYEGVFKKSRSKKKNS
Sbjct: 421 IQGYLIAQQYEGVFKKSRSKKKNS 444


>gi|254780521|ref|YP_003064934.1| flagellar biosynthesis repressor FlbT [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 153

 Score = 28.9 bits (63), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 10/81 (12%)

Query: 85  GIMPYISASIIVQLIAATVPSLENLKKEGEQGRKVINQYTRYATVLLGILQAYGIAVGLK 144
            I P+    +IVQ+I   VP+    KK+      +I+   RY  +L  I+Q   + + LK
Sbjct: 50  AITPFHQLYLIVQMIF-LVPT----KKDY-----LIDLGRRYINILFNIIQNQQLILALK 99

Query: 145 NGQGIVSDSDYFFVFSTIITL 165
           N + +++   +F     I TL
Sbjct: 100 NIESLINSGRFFEALKNIRTL 120


>gi|254780971|ref|YP_003065384.1| phosphoribosylformylglycinamidine synthase subunit I [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 219

 Score = 24.3 bits (51), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 99  IAATVPSLENLKKEGEQGRKVI 120
           IAA  P ++ +KK+ +QG KV+
Sbjct: 62  IAARTPVMQAIKKKAQQGIKVM 83


>gi|254781025|ref|YP_003065438.1| deoxyuridine 5 27-triphosphate nucleotidohydrolase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 154

 Score = 24.3 bits (51), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 13/81 (16%)

Query: 132 GILQAYGIAVGLKNGQGIVSDSDYFFVFSTIITLLGGTMFLVWLGEQITMRGIGNGVSLI 191
           G+   YG+A    N  G + DSDY      ++  LG   FL+  G +I          LI
Sbjct: 73  GLALNYGVAC--LNSPGTI-DSDYRGEIKILLINLGQENFLIMRGMRI--------AQLI 121

Query: 192 IFSGIVAGLPSSLVSVLELGR 212
           I + + A    SL+S + +G+
Sbjct: 122 IANSVRAH--PSLISAMPMGK 140


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.326    0.142    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 268,660
Number of Sequences: 1233
Number of extensions: 11383
Number of successful extensions: 32
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 10
length of query: 444
length of database: 328,796
effective HSP length: 77
effective length of query: 367
effective length of database: 233,855
effective search space: 85824785
effective search space used: 85824785
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 40 (20.0 bits)