HHsearch alignment for GI: 254780242 and conserved domain: COG1727
>COG1727 RPL18A Ribosomal protein L18E [Translation, ribosomal structure and biogenesis].
Probab=98.87 E-value=1.4e-09 Score=70.42 Aligned_cols=77 Identities=22% Similarity=0.404 Sum_probs=60.7
Q ss_pred CCEEEECCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEE
Q ss_conf 85301167635546565521477511204543024555332233555543086254433204630443144148999982
Q gi|254780242|r 54 MPLYRRLPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGA 133 (151)
Q Consensus 54 ~Pl~rrlPKrGF~~~~~~~~~~iNL~~L~~~i~~~~~~~~~~Id~~~L~~~gli~~~~~~vKiLg~Gel~~ki~I~v~~~ 133 (151)
T Consensus 29 a~iwk~vaerL~~--prr~ra~VnlsKI~r~ak-----~~d~v---------vV-----pGkVLg~g~l~~kVtVaAl~F 87 (122)
T COG1727 29 APIWKDVAERLEK--PRRNRAEVNVSKINRYAK-----EGDTV---------VV-----PGKVLGDGKLDKKVTVAALRF 87 (122)
T ss_pred CHHHHHHHHHHHC--CCCCCCCEEHHHHHHHCC-----CCCEE---------EE-----EEEEECCCCCCCCEEEEEEEC
T ss_conf 7799999999835--434588463899996547-----99889---------99-----556844764236569999861
Q ss_pred CHHHHHHHHHCCCEEEEC
Q ss_conf 699999999749889989
Q gi|254780242|r 134 SASAVEKVEKLGGQVIVI 151 (151)
Q Consensus 134 S~sA~ekIE~aGG~v~ii 151 (151)
T Consensus 88 S~~A~~KI~~aGGe~~tl 105 (122)
T COG1727 88 SKTAREKIEEAGGECLTL 105 (122)
T ss_pred CHHHHHHHHHCCCEEEEH
T ss_conf 778999999729858649