HHsearch alignment of GI: 254780242 and MMDB domain: 1vq8_L_
>1vq8_L (L:) 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui}
Probab=100.00 E-value=0 Score=260.32 Aligned_cols=136 Identities=21% Similarity=0.219 Sum_probs=125.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEHHHHHHHHCCCC
Q ss_conf 987676102031578989857-8776676423689866444316853011676355465655214775112045430245
Q gi|254780242|r 11 GSCKVKKRVARGIGSGTGKTA-GRGVKGQKSRSGVSVRGFEGGQMPLYRRLPKRGFVNIAGSDFVTISLGLLQAYIDKDR 89 (151)
Q Consensus 11 g~~~~~kR~GRG~gsg~Gkt~-GrG~kGqk~Rsg~~~~gfEGGQ~Pl~rrlPKrGF~~~~~~~~~~iNL~~L~~~i~~~~ 89 (151)
.++++++|+|||+|||+|+|+ ||||+||++|+ ||||||||||+|+||+||.+++...|.++||+.|+.|++.+.
T Consensus 2 ~s~~~k~R~gRg~gsG~gk~~~g~G~kG~~~r~-----Gfeggq~p~~~r~pK~Gf~~~~~~~~~~v~l~~l~~~~~~~~ 76 (165)
T 1vq8_L 2 TSKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDA-----GRDKHEFHNHEPLGKSGFKRPQKVQEEAATIDVREIDENVTL 76 (165)
T ss_dssp CCHHHHCTTCSSTTCSSTTSSCSGGGGTSSTTT-----TTTTTTCTTSCCSCCCCCCCCGGGCCCEEEEEHHHHHHTTGG
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHH
T ss_conf 886366366757367999888989798888776-----988788714557422367677866534666315458888876
Q ss_pred C------CCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEECHHHHHHHHHCCCEEEEC
Q ss_conf 5------5332233555543086254433204630443144148999982699999999749889989
Q gi|254780242|r 90 L------DCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI 151 (151)
Q Consensus 90 ~------~~~~~Id~~~L~~~gli~~~~~~vKiLg~Gel~~ki~I~v~~~S~sA~ekIE~aGG~v~ii 151 (151)
+ +...+++.+.|...+++.....++||||+|+|+.||+|+|++||++|+++||+|||+|+++
T Consensus 77 ~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~KvLg~G~l~~~i~I~~~~~S~~A~~kIE~aGG~v~~~ 144 (165)
T 1vq8_L 77 LAADDVAEVEDGGFRVDVRDVVEEADDADYVKVLGAGQVRHELTLIADDFSEGAREKVEGAGGSVELT 144 (165)
T ss_dssp GTTSCCCC-----CEEEGGGTCTTCTTSSEEEEECCSCCCSCCEEEESEECHHHHHHHHHTTCEEEEC
T ss_pred HCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCHHHHHHHHHCCCEEEEE
T ss_conf 30123101123301677887411334565279947883287879999972989999999859989994