HHsearch alignment of GI: 254780242 and MMDB domain: 2zkr_l_

>2zkr_l (l:) 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00  E-value=2.4e-42  Score=240.78  Aligned_cols=135  Identities=21%  Similarity=0.196  Sum_probs=113.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEEEECC----CCCCCCC----CCCCEEEEEHHHHH
Q ss_conf             876761020315789898578776676423689866-44431685301167----6355465----65521477511204
Q gi|254780242|r   12 SCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRRLP----KRGFVNI----AGSDFVTISLGLLQ   82 (151)
Q Consensus        12 ~~~~~kR~GRG~gsg~Gkt~GrG~kGqk~Rsg~~~~-gfEGGQ~Pl~rrlP----KrGF~~~----~~~~~~~iNL~~L~   82 (151)
                      ++++++|+|||++||.|+   +|||||++|+|...+ +|||||||||||+|    |+||+++    ++.+|.+|||++|+
T Consensus         3 s~k~k~R~gRG~~sg~gg---~g~kgqk~r~g~~~~~gfeggq~p~~rr~Pk~~gk~Gf~~~~~~~~~~~~~~inl~~l~   79 (148)
T 2zkr_l            3 SRLRKTRKLRGHVSHGHG---RIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKPW   79 (148)
T ss_dssp             ---CHHHHTTTTSCSSCC---SCSCC--CCSCSSSTTTTTTTCSSCTTTC------------------CCCCEEETHHHH
T ss_pred             CCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHH
T ss_conf             887654657888786889---89898988989888786557643344668663256897788557765060057799998


Q ss_pred             HHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCC-CCEEEEEEEECHHHHHHHHHCCCEEEEC
Q ss_conf             54302455533223355554308625443320463044314-4148999982699999999749889989
Q gi|254780242|r   83 AYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLK-AKVVLRVSGASASAVEKVEKLGGQVIVI  151 (151)
Q Consensus        83 ~~i~~~~~~~~~~Id~~~L~~~gli~~~~~~vKiLg~Gel~-~ki~I~v~~~S~sA~ekIE~aGG~v~ii  151 (151)
                      +|+|.+++|+...++...+  ..+.......+|||++|++. .||+|+|++||++|+++||+|||+|++|
T Consensus        80 ~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Kvlg~G~~~k~~i~I~v~~~S~~A~~~IE~aGG~v~~v  147 (148)
T 2zkr_l           80 TLVSEQTRVNAAKNKTGVA--PIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLV  147 (148)
T ss_dssp             HHTTTTTSSCTTTTEEEHH--HHSTTCSSSCCEEECCSCCCSSCCEEEESEECHHHHHHHHHTTCEEEEC
T ss_pred             HHCCCCCEEHHHHHHCCCC--CCCCCCCCCEEEECCCCCCCCCCEEEEEEEECHHHHHHHHHCCCEEEEE
T ss_conf             6421341203344320542--1110000121576147740574689998861999999999869989995