HHsearch alignment of GI: 254780242 and MMDB domain: 3i1n_L_

>3i1n_L (L:) 50S ribosomal protein L15; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_J 1p86_J 1vs8_L 2aw4_L 2awb_L 1vs6_L 2i2v_L 2j28_L 2i2t_L* 2qao_L* 2qba_L* 2qbc_L* 2qbe_L 2qbg_L 2qbi_L* 2qbk_L* 2qov_L 2qox_L 2qoz_L* 2qp1_L* ...
Probab=100.00  E-value=0  Score=311.82  Aligned_cols=142  Identities=43%  Similarity=0.634  Sum_probs=138.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCCCCEEEEEHH
Q ss_conf             97666888999876761020315789898578776676423689866-44431685301167635546565521477511
Q gi|254780242|r    1 MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRRLPKRGFVNIAGSDFVTISLG   79 (151)
Q Consensus         1 m~L~~l~~~~g~~~~~kR~GRG~gsg~Gkt~GrG~kGqk~Rsg~~~~-gfEGGQ~Pl~rrlPKrGF~~~~~~~~~~iNL~   79 (151)
                      |+||||+|+||++++++|+|||+|||+|||||||||||++|+|...+ +|||||||+|+|+||+||+++++.+|.+|||+
T Consensus         1 ~~L~~l~~~~g~~~~k~R~gRg~gsG~gkt~grg~kg~~~r~g~~~~~gfeggq~p~~~~~pK~Gf~~~~~~~~~~inl~   80 (144)
T 3i1n_L            1 MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEIRLS   80 (144)
T ss_dssp             -CTTSCCCCTTTSCCCCCCSSCSTTSSCSTTSSCSSSTTSSSSCCCCTTCCTTSCCHHHHSCCCCCCCSTGGGEEECCST
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCEEEEEEEEH
T ss_conf             96365878988841640467878899997888888998776798868664567555521165340121231058776600


Q ss_pred             HHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEECHHHHHHHHHCCCEEE
Q ss_conf             2045430245553322335555430862544332046304431441489999826999999997498899
Q gi|254780242|r   80 LLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVI  149 (151)
Q Consensus        80 ~L~~~i~~~~~~~~~~Id~~~L~~~gli~~~~~~vKiLg~Gel~~ki~I~v~~~S~sA~ekIE~aGG~v~  149 (151)
                      +|+.+++       ++||.+.|.+.+++......+|||++|+|+.||+|+|++||++|+|+||+|||+|+
T Consensus        81 ~l~~~~~-------~~i~~~~l~~~~i~~~~~~~~KlLg~G~l~~~l~Ikv~~~S~~A~ekIe~aGG~v~  143 (144)
T 3i1n_L           81 DLAKVEG-------GVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIE  143 (144)
T ss_dssp             TTTTSSS-------SEECTTTTTTTTSSCTTCCEEECCCCCCCCSCCEEESSBCCHHHHHHHHHTTCEEE
T ss_pred             HHHHHHC-------CCCHHHHHHHCCEEECCCEEEEEECCCCCCCCEEEEEEEECHHHHHHHHHHCCEEE
T ss_conf             1223230-------34103454432656401000178606831677799999858999999998198552