HHsearch results for GI: 254780242 and protein with PDBid: 1vq8_L

>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ...
Probab=100.00  E-value=8.7e-43  Score=242.31  Aligned_cols=136  Identities=22%  Similarity=0.244  Sum_probs=115.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC--CCCEEEEEHHHHHHHHCC
Q ss_conf             98767610203157898985-787766764236898664443168530116763554656--552147751120454302
Q gi|254780242|r   11 GSCKVKKRVARGIGSGTGKT-AGRGVKGQKSRSGVSVRGFEGGQMPLYRRLPKRGFVNIA--GSDFVTISLGLLQAYIDK   87 (151)
Q Consensus        11 g~~~~~kR~GRG~gsg~Gkt-~GrG~kGqk~Rsg~~~~gfEGGQ~Pl~rrlPKrGF~~~~--~~~~~~iNL~~L~~~i~~   87 (151)
                      .|+++++|+|||+|||+|+| ||||||||++|+|+..+     |+|+|+++|||||++++  +.+|.+|||..|+.+++.
T Consensus         2 ~sk~~k~R~gRg~G~G~~k~~~GrG~KGqk~RsG~~~~-----~~~~~~~~pkrGf~~~~~~~~~~~~inl~~L~~~~~~   76 (165)
T 1vq8_L            2 TSKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGRDKH-----EFHNHEPLGKSGFKRPQKVQEEAATIDVREIDENVTL   76 (165)
T ss_dssp             CCHHHHCTTCSSTTCSSTTSSCSGGGGTSSTTTTTTTT-----TCTTSCCSCCCCCCCCGGGCCCEEEEEHHHHHHTTGG
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHH
T ss_conf             88746666786746799988898979998857798778-----8866766972488887665225754136778887754


Q ss_pred             CCCC----CCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEECHHHHHHHHHCCCEEEEC
Q ss_conf             4555----332233555543086254433204630443144148999982699999999749889989
Q gi|254780242|r   88 DRLD----CSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI  151 (151)
Q Consensus        88 ~~~~----~~~~Id~~~L~~~gli~~~~~~vKiLg~Gel~~ki~I~v~~~S~sA~ekIE~aGG~v~ii  151 (151)
                      ...+    ....++...|.+..++.....+|||||+|+|+.||+|+|++||++|+++||+|||+|+|+
T Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vKILG~Gel~~kl~I~a~~~S~sA~ekIE~aGG~v~l~  144 (165)
T 1vq8_L           77 LAADDVAEVEDGGFRVDVRDVVEEADDADYVKVLGAGQVRHELTLIADDFSEGAREKVEGAGGSVELT  144 (165)
T ss_dssp             GTTSCCCC-----CEEEGGGTCTTCTTSSEEEEECCSCCCSCCEEEESEECHHHHHHHHHTTCEEEEC
T ss_pred             HCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEEEECCHHHHHHHHHCCCEEEEE
T ss_conf             01122111123401676886401124565279963782077779998861999999999849989995