HHsearch results for GI: 254780242 and protein with PDBid: 2j01_P
>2j01_P 50S ribosomal protein L15; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: c.12.1.1 PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ...
Probab=100.00 E-value=0 Score=337.62 Aligned_cols=141 Identities=39% Similarity=0.626 Sum_probs=127.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC-CCCCCCCCEEEECCCCCCCCCC-----CCCE
Q ss_conf 976668889998767610203157898985787766764236898-66-4443168530116763554656-----5521
Q gi|254780242|r 1 MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVS-VR-GFEGGQMPLYRRLPKRGFVNIA-----GSDF 73 (151)
Q Consensus 1 m~L~~l~~~~g~~~~~kR~GRG~gsg~Gkt~GrG~kGqk~Rsg~~-~~-gfEGGQ~Pl~rrlPKrGF~~~~-----~~~~ 73 (151)
|+||||+|++||+++++|+|||+|||+|||||||||||+||||+. .+ +|||||||||||||||||++++ ..+|
T Consensus 1 m~L~~l~~~~g~~k~~kR~GRG~gsg~Gkt~GrG~kGqk~RsG~~~~~~~fEGGq~Pl~rrlPKrGF~~~~~~~~~~~~~ 80 (150)
T 2j01_P 1 MKLSDLRPNPGANKRRKRVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGRSTTLMRLPKRGMQGQVPGEIKRPRY 80 (150)
T ss_dssp ----CCSSSCCCSSCCCCCCCCSCSSSSSCTTCSSCCSSSCSSCCCCSSSCCSSSCTTCCSCCCCCSCCCSSCSCCCCCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEECCCCCCCEEEEEE
T ss_conf 95244889989864773665778889896689989988767788868762147876777227633120355442122342
Q ss_pred EEEEHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEECHHHHHHHHHCCCEEEEC
Q ss_conf 477511204543024555332233555543086254433204630443144148999982699999999749889989
Q gi|254780242|r 74 VTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI 151 (151)
Q Consensus 74 ~~iNL~~L~~~i~~~~~~~~~~Id~~~L~~~gli~~~~~~vKiLg~Gel~~ki~I~v~~~S~sA~ekIE~aGG~v~ii 151 (151)
.+|||++|+.+ +.++++++|++++++++. ++|||||+||++ ||+|+|++||++|+|+||+|||+|++|
T Consensus 81 ~~inl~~l~~~--------~~~~~~~~L~~~glik~~-~~vKiLG~Ge~k-~l~I~v~~~S~sA~ekIE~aGG~v~ii 148 (150)
T 2j01_P 81 QGVNLKDLARF--------EGEVTPELLVRAGLLKKG-YRLKILGEGEAK-PLKVVAHAFSKSALEKLKAAGGEPVLL 148 (150)
T ss_dssp EEEETTTTTTS--------CSCCCTTTTTTSSSCSSC-CEEEEECSSCCC-SSCCCCSBCCHHHHHHHHTSCCCCCCC
T ss_pred EHHHHHHHHCC--------CCCCCHHHHHHCCCCCCC-CCEEEEECCCEE-EEEEEEEEECHHHHHHHHHCCCEEEEE
T ss_conf 02335454113--------322569999873755578-678998079478-789998986899999999869989996