HHsearch results for GI: 254780242 and protein with PDBid: 2j01_P

>2j01_P 50S ribosomal protein L15; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: c.12.1.1 PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ...
Probab=100.00  E-value=0  Score=337.62  Aligned_cols=141  Identities=39%  Similarity=0.626  Sum_probs=127.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC-CCCCCCCCEEEECCCCCCCCCC-----CCCE
Q ss_conf             976668889998767610203157898985787766764236898-66-4443168530116763554656-----5521
Q gi|254780242|r    1 MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVS-VR-GFEGGQMPLYRRLPKRGFVNIA-----GSDF   73 (151)
Q Consensus         1 m~L~~l~~~~g~~~~~kR~GRG~gsg~Gkt~GrG~kGqk~Rsg~~-~~-gfEGGQ~Pl~rrlPKrGF~~~~-----~~~~   73 (151)
                      |+||||+|++||+++++|+|||+|||+|||||||||||+||||+. .+ +|||||||||||||||||++++     ..+|
T Consensus         1 m~L~~l~~~~g~~k~~kR~GRG~gsg~Gkt~GrG~kGqk~RsG~~~~~~~fEGGq~Pl~rrlPKrGF~~~~~~~~~~~~~   80 (150)
T 2j01_P            1 MKLSDLRPNPGANKRRKRVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRRFEGGRSTTLMRLPKRGMQGQVPGEIKRPRY   80 (150)
T ss_dssp             ----CCSSSCCCSSCCCCCCCCSCSSSSSCTTCSSCCSSSCSSCCCCSSSCCSSSCTTCCSCCCCCSCCCSSCSCCCCCE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEECCCCCCCEEEEEE
T ss_conf             95244889989864773665778889896689989988767788868762147876777227633120355442122342


Q ss_pred             EEEEHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEECHHHHHHHHHCCCEEEEC
Q ss_conf             477511204543024555332233555543086254433204630443144148999982699999999749889989
Q gi|254780242|r   74 VTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI  151 (151)
Q Consensus        74 ~~iNL~~L~~~i~~~~~~~~~~Id~~~L~~~gli~~~~~~vKiLg~Gel~~ki~I~v~~~S~sA~ekIE~aGG~v~ii  151 (151)
                      .+|||++|+.+        +.++++++|++++++++. ++|||||+||++ ||+|+|++||++|+|+||+|||+|++|
T Consensus        81 ~~inl~~l~~~--------~~~~~~~~L~~~glik~~-~~vKiLG~Ge~k-~l~I~v~~~S~sA~ekIE~aGG~v~ii  148 (150)
T 2j01_P           81 QGVNLKDLARF--------EGEVTPELLVRAGLLKKG-YRLKILGEGEAK-PLKVVAHAFSKSALEKLKAAGGEPVLL  148 (150)
T ss_dssp             EEEETTTTTTS--------CSCCCTTTTTTSSSCSSC-CEEEEECSSCCC-SSCCCCSBCCHHHHHHHHTSCCCCCCC
T ss_pred             EHHHHHHHHCC--------CCCCCHHHHHHCCCCCCC-CCEEEEECCCEE-EEEEEEEEECHHHHHHHHHCCCEEEEE
T ss_conf             02335454113--------322569999873755578-678998079478-789998986899999999869989996